data_3N9L # _model_server_result.job_id toDzeQ795s40hqASfVZZDg _model_server_result.datetime_utc '2024-12-26 16:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3N9L # _exptl.entry_id 3N9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N9L _cell.length_a 68.912 _cell.length_b 87.264 _cell.length_c 102.491 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C FE FE2 . A FE2 1 1_555 F O2' OGA . A OGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 C FE FE2 . A FE2 1 1_555 F O2 OGA . A OGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 C FE FE2 . A FE2 1 1_555 G O HOH . A HOH 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 C FE FE2 . A FE2 1 1_555 A NE2 HIS 312 A HIS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 C FE FE2 . A FE2 1 1_555 A OD2 ASP 314 A ASP 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 C FE FE2 . A FE2 1 1_555 A NE2 HIS 384 A HIS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 D ZN ZN . A ZN 2 1_555 A SG CYS 15 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc8 D ZN ZN . A ZN 2 1_555 A SG CYS 18 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc9 D ZN ZN . A ZN 2 1_555 A ND1 HIS 69 A HIS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 D ZN ZN . A ZN 2 1_555 A SG CYS 72 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc11 E ZN ZN . A ZN 3 1_555 A SG CYS 61 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc12 E ZN ZN . A ZN 3 1_555 A SG CYS 64 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc13 E ZN ZN . A ZN 3 1_555 A SG CYS 88 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc14 E ZN ZN . A ZN 3 1_555 A SG CYS 91 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N9L _atom_sites.fract_transf_matrix[1][1] 0.014511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FE2 A 1 1 1 FE2 FE2 . D 4 ZN A 1 2 2 ZN ZN . E 4 ZN A 1 3 3 ZN ZN . F 5 OGA A 1 4 4 OGA OGA . G 6 HOH A 1 5 5 HOH HOH . G 6 HOH A 2 6 6 HOH HOH . G 6 HOH A 3 7 7 HOH HOH . G 6 HOH A 4 8 8 HOH HOH . G 6 HOH A 5 9 9 HOH HOH . G 6 HOH A 6 10 10 HOH HOH . G 6 HOH A 7 11 11 HOH HOH . G 6 HOH A 8 12 12 HOH HOH . G 6 HOH A 9 13 13 HOH HOH . G 6 HOH A 10 14 14 HOH HOH . G 6 HOH A 11 15 15 HOH HOH . G 6 HOH A 12 16 16 HOH HOH . G 6 HOH A 13 17 17 HOH HOH . G 6 HOH A 14 18 18 HOH HOH . G 6 HOH A 15 19 19 HOH HOH . G 6 HOH A 16 20 20 HOH HOH . G 6 HOH A 17 21 21 HOH HOH . G 6 HOH A 18 22 22 HOH HOH . G 6 HOH A 19 23 23 HOH HOH . G 6 HOH A 20 24 24 HOH HOH . G 6 HOH A 21 25 25 HOH HOH . G 6 HOH A 22 26 26 HOH HOH . G 6 HOH A 23 27 27 HOH HOH . G 6 HOH A 24 28 28 HOH HOH . G 6 HOH A 25 29 29 HOH HOH . G 6 HOH A 26 30 30 HOH HOH . G 6 HOH A 27 31 31 HOH HOH . G 6 HOH A 28 32 32 HOH HOH . G 6 HOH A 29 33 33 HOH HOH . G 6 HOH A 30 34 34 HOH HOH . G 6 HOH A 31 35 35 HOH HOH . G 6 HOH A 32 36 36 HOH HOH . G 6 HOH A 33 37 37 HOH HOH . G 6 HOH A 34 38 38 HOH HOH . G 6 HOH A 35 39 39 HOH HOH . G 6 HOH A 36 40 40 HOH HOH . G 6 HOH A 37 41 41 HOH HOH . G 6 HOH A 38 42 42 HOH HOH . G 6 HOH A 39 43 43 HOH HOH . G 6 HOH A 40 44 44 HOH HOH . G 6 HOH A 41 45 45 HOH HOH . G 6 HOH A 42 46 46 HOH HOH . G 6 HOH A 43 47 47 HOH HOH . G 6 HOH A 44 48 48 HOH HOH . G 6 HOH A 45 49 49 HOH HOH . G 6 HOH A 46 50 50 HOH HOH . G 6 HOH A 47 51 51 HOH HOH . G 6 HOH A 48 52 52 HOH HOH . G 6 HOH A 49 53 53 HOH HOH . G 6 HOH A 50 54 54 HOH HOH . G 6 HOH A 51 55 55 HOH HOH . G 6 HOH A 52 56 56 HOH HOH . G 6 HOH A 53 57 57 HOH HOH . G 6 HOH A 54 58 58 HOH HOH . G 6 HOH A 55 59 59 HOH HOH . G 6 HOH A 56 60 60 HOH HOH . G 6 HOH A 57 61 61 HOH HOH . G 6 HOH A 58 62 62 HOH HOH . G 6 HOH A 59 63 63 HOH HOH . G 6 HOH A 60 64 64 HOH HOH . G 6 HOH A 61 65 65 HOH HOH . G 6 HOH A 62 66 66 HOH HOH . G 6 HOH A 63 67 67 HOH HOH . G 6 HOH A 64 68 68 HOH HOH . G 6 HOH A 65 69 69 HOH HOH . G 6 HOH A 66 70 70 HOH HOH . G 6 HOH A 67 71 71 HOH HOH . G 6 HOH A 68 72 72 HOH HOH . G 6 HOH A 69 73 73 HOH HOH . G 6 HOH A 70 74 74 HOH HOH . G 6 HOH A 71 75 75 HOH HOH . G 6 HOH A 72 76 76 HOH HOH . G 6 HOH A 73 77 77 HOH HOH . G 6 HOH A 74 78 78 HOH HOH . G 6 HOH A 75 79 79 HOH HOH . G 6 HOH A 76 80 80 HOH HOH . G 6 HOH A 77 81 81 HOH HOH . G 6 HOH A 78 82 82 HOH HOH . G 6 HOH A 79 83 83 HOH HOH . G 6 HOH A 80 84 84 HOH HOH . G 6 HOH A 81 85 85 HOH HOH . G 6 HOH A 82 86 86 HOH HOH . G 6 HOH A 83 87 87 HOH HOH . G 6 HOH A 84 88 88 HOH HOH . G 6 HOH A 85 89 89 HOH HOH . G 6 HOH A 86 90 90 HOH HOH . G 6 HOH A 87 91 91 HOH HOH . G 6 HOH A 88 92 92 HOH HOH . G 6 HOH A 89 93 93 HOH HOH . G 6 HOH A 90 94 94 HOH HOH . G 6 HOH A 91 95 95 HOH HOH . G 6 HOH A 92 96 96 HOH HOH . G 6 HOH A 93 712 1 HOH HOH . G 6 HOH A 94 713 2 HOH HOH . G 6 HOH A 95 714 3 HOH HOH . G 6 HOH A 96 715 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.595 _atom_site.Cartn_y 1.7 _atom_site.Cartn_z 14.669 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #