data_3N9M # _model_server_result.job_id EP3uxtgwS2wRSnwYGGkWJg _model_server_result.datetime_utc '2025-03-05 18:12:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3N9M # _exptl.entry_id 3N9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.69 _cell.angle_gamma 90 _cell.entry_id 3N9M _cell.length_a 66.004 _cell.length_b 144.515 _cell.length_c 78.413 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C FE FE2 . A FE2 1 1_555 A NE2 HIS 312 A HIS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 C FE FE2 . A FE2 1 1_555 A OD2 ASP 314 A ASP 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 C FE FE2 . A FE2 1 1_555 A NE2 HIS 384 A HIS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 D ZN ZN . A ZN 2 1_555 A SG CYS 15 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 D ZN ZN . A ZN 2 1_555 A SG CYS 18 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 D ZN ZN . A ZN 2 1_555 A ND1 HIS 69 A HIS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 D ZN ZN . A ZN 2 1_555 A SG CYS 72 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 E ZN ZN . A ZN 3 1_555 A SG CYS 61 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 E ZN ZN . A ZN 3 1_555 A SG CYS 64 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 E ZN ZN . A ZN 3 1_555 A SG CYS 88 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc11 E ZN ZN . A ZN 3 1_555 A SG CYS 91 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc12 F FE FE2 . C FE2 1 1_555 J O HOH . C HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc13 F FE FE2 . C FE2 1 1_555 B NE2 HIS 312 C HIS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc14 F FE FE2 . C FE2 1 1_555 B OD2 ASP 314 C ASP 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc15 F FE FE2 . C FE2 1 1_555 B NE2 HIS 384 C HIS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc16 G ZN ZN . C ZN 2 1_555 B SG CYS 15 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc17 G ZN ZN . C ZN 2 1_555 B SG CYS 18 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc18 G ZN ZN . C ZN 2 1_555 B ND1 HIS 69 C HIS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc19 G ZN ZN . C ZN 2 1_555 B SG CYS 72 C CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc20 H ZN ZN . C ZN 3 1_555 B SG CYS 61 C CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc21 H ZN ZN . C ZN 3 1_555 B SG CYS 64 C CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc22 H ZN ZN . C ZN 3 1_555 B SG CYS 88 C CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc23 H ZN ZN . C ZN 3 1_555 B SG CYS 91 C CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N9M _atom_sites.fract_transf_matrix[1][1] 0.015151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004543 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 1 1 FE2 FE2 . D 3 ZN A 1 2 2 ZN ZN . E 3 ZN A 1 3 3 ZN ZN . F 2 FE2 C 1 1 1 FE2 FE2 . G 3 ZN C 1 2 2 ZN ZN . H 3 ZN C 1 3 3 ZN ZN . I 4 HOH A 1 6 6 HOH HOH . I 4 HOH A 2 7 7 HOH HOH . I 4 HOH A 3 9 9 HOH HOH . I 4 HOH A 4 12 12 HOH HOH . I 4 HOH A 5 15 15 HOH HOH . I 4 HOH A 6 18 18 HOH HOH . I 4 HOH A 7 20 20 HOH HOH . I 4 HOH A 8 24 24 HOH HOH . I 4 HOH A 9 25 25 HOH HOH . I 4 HOH A 10 26 26 HOH HOH . I 4 HOH A 11 28 28 HOH HOH . I 4 HOH A 12 29 29 HOH HOH . I 4 HOH A 13 31 31 HOH HOH . I 4 HOH A 14 33 33 HOH HOH . I 4 HOH A 15 37 37 HOH HOH . I 4 HOH A 16 38 38 HOH HOH . I 4 HOH A 17 40 40 HOH HOH . I 4 HOH A 18 41 41 HOH HOH . I 4 HOH A 19 42 42 HOH HOH . I 4 HOH A 20 46 46 HOH HOH . I 4 HOH A 21 47 47 HOH HOH . I 4 HOH A 22 53 53 HOH HOH . I 4 HOH A 23 55 55 HOH HOH . I 4 HOH A 24 56 56 HOH HOH . I 4 HOH A 25 57 57 HOH HOH . I 4 HOH A 26 58 58 HOH HOH . I 4 HOH A 27 61 61 HOH HOH . I 4 HOH A 28 62 62 HOH HOH . I 4 HOH A 29 67 67 HOH HOH . I 4 HOH A 30 68 68 HOH HOH . I 4 HOH A 31 70 70 HOH HOH . I 4 HOH A 32 72 72 HOH HOH . I 4 HOH A 33 75 75 HOH HOH . I 4 HOH A 34 76 76 HOH HOH . I 4 HOH A 35 77 77 HOH HOH . I 4 HOH A 36 80 80 HOH HOH . I 4 HOH A 37 81 81 HOH HOH . I 4 HOH A 38 85 85 HOH HOH . I 4 HOH A 39 91 91 HOH HOH . I 4 HOH A 40 92 92 HOH HOH . I 4 HOH A 41 95 95 HOH HOH . I 4 HOH A 42 98 98 HOH HOH . I 4 HOH A 43 101 101 HOH HOH . I 4 HOH A 44 103 103 HOH HOH . I 4 HOH A 45 104 104 HOH HOH . I 4 HOH A 46 105 105 HOH HOH . I 4 HOH A 47 106 106 HOH HOH . I 4 HOH A 48 107 107 HOH HOH . I 4 HOH A 49 108 108 HOH HOH . I 4 HOH A 50 110 110 HOH HOH . I 4 HOH A 51 111 111 HOH HOH . I 4 HOH A 52 112 112 HOH HOH . I 4 HOH A 53 117 117 HOH HOH . I 4 HOH A 54 119 119 HOH HOH . I 4 HOH A 55 122 122 HOH HOH . I 4 HOH A 56 123 123 HOH HOH . I 4 HOH A 57 128 128 HOH HOH . I 4 HOH A 58 131 131 HOH HOH . I 4 HOH A 59 134 134 HOH HOH . I 4 HOH A 60 135 135 HOH HOH . I 4 HOH A 61 137 137 HOH HOH . I 4 HOH A 62 139 139 HOH HOH . I 4 HOH A 63 140 140 HOH HOH . I 4 HOH A 64 142 142 HOH HOH . I 4 HOH A 65 144 144 HOH HOH . I 4 HOH A 66 145 145 HOH HOH . I 4 HOH A 67 147 147 HOH HOH . I 4 HOH A 68 149 149 HOH HOH . I 4 HOH A 69 151 151 HOH HOH . I 4 HOH A 70 152 152 HOH HOH . I 4 HOH A 71 153 153 HOH HOH . I 4 HOH A 72 155 155 HOH HOH . I 4 HOH A 73 156 156 HOH HOH . I 4 HOH A 74 157 157 HOH HOH . I 4 HOH A 75 161 161 HOH HOH . I 4 HOH A 76 163 163 HOH HOH . I 4 HOH A 77 167 167 HOH HOH . I 4 HOH A 78 168 168 HOH HOH . I 4 HOH A 79 171 171 HOH HOH . I 4 HOH A 80 173 173 HOH HOH . I 4 HOH A 81 174 174 HOH HOH . I 4 HOH A 82 175 175 HOH HOH . I 4 HOH A 83 177 177 HOH HOH . I 4 HOH A 84 183 183 HOH HOH . I 4 HOH A 85 712 1 HOH HOH . I 4 HOH A 86 713 184 HOH HOH . I 4 HOH A 87 714 186 HOH HOH . I 4 HOH A 88 715 188 HOH HOH . I 4 HOH A 89 716 191 HOH HOH . I 4 HOH A 90 717 192 HOH HOH . I 4 HOH A 91 718 193 HOH HOH . I 4 HOH A 92 719 195 HOH HOH . I 4 HOH A 93 720 196 HOH HOH . I 4 HOH A 94 721 199 HOH HOH . I 4 HOH A 95 722 213 HOH HOH . I 4 HOH A 96 723 216 HOH HOH . I 4 HOH A 97 724 219 HOH HOH . I 4 HOH A 98 725 222 HOH HOH . I 4 HOH A 99 726 230 HOH HOH . I 4 HOH A 100 727 231 HOH HOH . I 4 HOH A 101 728 235 HOH HOH . I 4 HOH A 102 729 236 HOH HOH . I 4 HOH A 103 730 238 HOH HOH . I 4 HOH A 104 731 239 HOH HOH . I 4 HOH A 105 732 240 HOH HOH . I 4 HOH A 106 733 241 HOH HOH . I 4 HOH A 107 734 244 HOH HOH . I 4 HOH A 108 735 245 HOH HOH . I 4 HOH A 109 736 248 HOH HOH . I 4 HOH A 110 737 249 HOH HOH . I 4 HOH A 111 738 250 HOH HOH . I 4 HOH A 112 739 252 HOH HOH . J 4 HOH C 1 4 4 HOH HOH . J 4 HOH C 2 5 5 HOH HOH . J 4 HOH C 3 8 8 HOH HOH . J 4 HOH C 4 10 10 HOH HOH . J 4 HOH C 5 11 11 HOH HOH . J 4 HOH C 6 14 14 HOH HOH . J 4 HOH C 7 16 16 HOH HOH . J 4 HOH C 8 17 17 HOH HOH . J 4 HOH C 9 19 19 HOH HOH . J 4 HOH C 10 21 21 HOH HOH . J 4 HOH C 11 22 22 HOH HOH . J 4 HOH C 12 23 23 HOH HOH . J 4 HOH C 13 27 27 HOH HOH . J 4 HOH C 14 30 30 HOH HOH . J 4 HOH C 15 32 32 HOH HOH . J 4 HOH C 16 34 34 HOH HOH . J 4 HOH C 17 35 35 HOH HOH . J 4 HOH C 18 36 36 HOH HOH . J 4 HOH C 19 39 39 HOH HOH . J 4 HOH C 20 43 43 HOH HOH . J 4 HOH C 21 44 44 HOH HOH . J 4 HOH C 22 45 45 HOH HOH . J 4 HOH C 23 48 48 HOH HOH . J 4 HOH C 24 49 49 HOH HOH . J 4 HOH C 25 50 50 HOH HOH . J 4 HOH C 26 51 51 HOH HOH . J 4 HOH C 27 52 52 HOH HOH . J 4 HOH C 28 54 54 HOH HOH . J 4 HOH C 29 59 59 HOH HOH . J 4 HOH C 30 60 60 HOH HOH . J 4 HOH C 31 63 63 HOH HOH . J 4 HOH C 32 64 64 HOH HOH . J 4 HOH C 33 65 65 HOH HOH . J 4 HOH C 34 66 66 HOH HOH . J 4 HOH C 35 69 69 HOH HOH . J 4 HOH C 36 71 71 HOH HOH . J 4 HOH C 37 73 73 HOH HOH . J 4 HOH C 38 74 74 HOH HOH . J 4 HOH C 39 78 78 HOH HOH . J 4 HOH C 40 79 79 HOH HOH . J 4 HOH C 41 82 82 HOH HOH . J 4 HOH C 42 84 84 HOH HOH . J 4 HOH C 43 86 86 HOH HOH . J 4 HOH C 44 87 87 HOH HOH . J 4 HOH C 45 88 88 HOH HOH . J 4 HOH C 46 90 90 HOH HOH . J 4 HOH C 47 93 93 HOH HOH . J 4 HOH C 48 94 94 HOH HOH . J 4 HOH C 49 96 96 HOH HOH . J 4 HOH C 50 99 99 HOH HOH . J 4 HOH C 51 100 100 HOH HOH . J 4 HOH C 52 102 102 HOH HOH . J 4 HOH C 53 109 109 HOH HOH . J 4 HOH C 54 114 114 HOH HOH . J 4 HOH C 55 116 116 HOH HOH . J 4 HOH C 56 118 118 HOH HOH . J 4 HOH C 57 120 120 HOH HOH . J 4 HOH C 58 121 121 HOH HOH . J 4 HOH C 59 124 124 HOH HOH . J 4 HOH C 60 125 125 HOH HOH . J 4 HOH C 61 126 126 HOH HOH . J 4 HOH C 62 127 127 HOH HOH . J 4 HOH C 63 129 129 HOH HOH . J 4 HOH C 64 132 132 HOH HOH . J 4 HOH C 65 133 133 HOH HOH . J 4 HOH C 66 136 136 HOH HOH . J 4 HOH C 67 138 138 HOH HOH . J 4 HOH C 68 141 141 HOH HOH . J 4 HOH C 69 143 143 HOH HOH . J 4 HOH C 70 146 146 HOH HOH . J 4 HOH C 71 148 148 HOH HOH . J 4 HOH C 72 150 150 HOH HOH . J 4 HOH C 73 154 154 HOH HOH . J 4 HOH C 74 159 159 HOH HOH . J 4 HOH C 75 160 160 HOH HOH . J 4 HOH C 76 162 162 HOH HOH . J 4 HOH C 77 164 164 HOH HOH . J 4 HOH C 78 165 165 HOH HOH . J 4 HOH C 79 166 166 HOH HOH . J 4 HOH C 80 170 170 HOH HOH . J 4 HOH C 81 172 172 HOH HOH . J 4 HOH C 82 176 176 HOH HOH . J 4 HOH C 83 181 181 HOH HOH . J 4 HOH C 84 182 182 HOH HOH . J 4 HOH C 85 712 2 HOH HOH . J 4 HOH C 86 713 3 HOH HOH . J 4 HOH C 87 714 189 HOH HOH . J 4 HOH C 88 715 190 HOH HOH . J 4 HOH C 89 716 194 HOH HOH . J 4 HOH C 90 717 197 HOH HOH . J 4 HOH C 91 718 198 HOH HOH . J 4 HOH C 92 719 200 HOH HOH . J 4 HOH C 93 720 201 HOH HOH . J 4 HOH C 94 721 203 HOH HOH . J 4 HOH C 95 722 204 HOH HOH . J 4 HOH C 96 723 206 HOH HOH . J 4 HOH C 97 724 207 HOH HOH . J 4 HOH C 98 725 208 HOH HOH . J 4 HOH C 99 726 211 HOH HOH . J 4 HOH C 100 727 212 HOH HOH . J 4 HOH C 101 728 214 HOH HOH . J 4 HOH C 102 729 215 HOH HOH . J 4 HOH C 103 730 220 HOH HOH . J 4 HOH C 104 731 221 HOH HOH . J 4 HOH C 105 732 226 HOH HOH . J 4 HOH C 106 733 227 HOH HOH . J 4 HOH C 107 734 246 HOH HOH . J 4 HOH C 108 735 251 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -27.336 _atom_site.Cartn_y -12.316 _atom_site.Cartn_z 70.908 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 1 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #