data_3N9P # _model_server_result.job_id TGidk1O2q-G3iR9LFlZy8g _model_server_result.datetime_utc '2024-12-26 17:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3}' # _entry.id 3N9P # _exptl.entry_id 3N9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.18 _cell.angle_gamma 90 _cell.entry_id 3N9P _cell.length_a 60.112 _cell.length_b 86.368 _cell.length_c 62.744 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 C C ARG 26 C ARG 26 1_555 C N MLY 27 C MLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 C C MLY 27 C MLY 27 1_555 C N SER 28 C SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 D FE FE2 . A FE2 1 1_555 G O2 OGA . A OGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc2 D FE FE2 . A FE2 1 1_555 G O2' OGA . A OGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 D FE FE2 . A FE2 1 1_555 H O HOH . A HOH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 D FE FE2 . A FE2 1 1_555 A NE2 HIS 312 A HIS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 D FE FE2 . A FE2 1 1_555 A OD2 ASP 314 A ASP 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 D FE FE2 . A FE2 1 1_555 A NE2 HIS 384 A HIS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc7 E ZN ZN . A ZN 2 1_555 A SG CYS 15 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 E ZN ZN . A ZN 2 1_555 A SG CYS 18 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc9 E ZN ZN . A ZN 2 1_555 A ND1 HIS 69 A HIS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc10 E ZN ZN . A ZN 2 1_555 A SG CYS 72 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 F ZN ZN . A ZN 3 1_555 A SG CYS 61 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc12 F ZN ZN . A ZN 3 1_555 A SG CYS 64 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc13 F ZN ZN . A ZN 3 1_555 A SG CYS 88 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc14 F ZN ZN . A ZN 3 1_555 A SG CYS 91 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N9P _atom_sites.fract_transf_matrix[1][1] 0.016636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FE2 A 1 1 1 FE2 FE . E 4 ZN A 1 2 2 ZN ZN . F 4 ZN A 1 3 3 ZN ZN . G 5 OGA A 1 4 4 OGA OGA . H 6 HOH A 1 5 5 HOH HOH . H 6 HOH A 2 6 6 HOH HOH . H 6 HOH A 3 7 7 HOH HOH . H 6 HOH A 4 9 9 HOH HOH . H 6 HOH A 5 10 10 HOH HOH . H 6 HOH A 6 11 11 HOH HOH . H 6 HOH A 7 12 12 HOH HOH . H 6 HOH A 8 13 13 HOH HOH . H 6 HOH A 9 14 14 HOH HOH . H 6 HOH A 10 15 15 HOH HOH . H 6 HOH A 11 16 16 HOH HOH . H 6 HOH A 12 17 17 HOH HOH . H 6 HOH A 13 18 18 HOH HOH . H 6 HOH A 14 19 19 HOH HOH . H 6 HOH A 15 20 20 HOH HOH . H 6 HOH A 16 21 21 HOH HOH . H 6 HOH A 17 22 22 HOH HOH . H 6 HOH A 18 23 23 HOH HOH . H 6 HOH A 19 24 24 HOH HOH . H 6 HOH A 20 25 25 HOH HOH . H 6 HOH A 21 26 26 HOH HOH . H 6 HOH A 22 27 27 HOH HOH . H 6 HOH A 23 28 28 HOH HOH . H 6 HOH A 24 29 29 HOH HOH . H 6 HOH A 25 30 30 HOH HOH . H 6 HOH A 26 31 31 HOH HOH . H 6 HOH A 27 32 32 HOH HOH . H 6 HOH A 28 33 33 HOH HOH . H 6 HOH A 29 34 34 HOH HOH . H 6 HOH A 30 35 35 HOH HOH . H 6 HOH A 31 36 36 HOH HOH . H 6 HOH A 32 37 37 HOH HOH . H 6 HOH A 33 38 38 HOH HOH . H 6 HOH A 34 39 39 HOH HOH . H 6 HOH A 35 40 40 HOH HOH . H 6 HOH A 36 41 41 HOH HOH . H 6 HOH A 37 42 42 HOH HOH . H 6 HOH A 38 44 44 HOH HOH . H 6 HOH A 39 45 45 HOH HOH . H 6 HOH A 40 46 46 HOH HOH . H 6 HOH A 41 47 47 HOH HOH . H 6 HOH A 42 48 48 HOH HOH . H 6 HOH A 43 49 49 HOH HOH . H 6 HOH A 44 50 50 HOH HOH . H 6 HOH A 45 51 51 HOH HOH . H 6 HOH A 46 52 52 HOH HOH . H 6 HOH A 47 53 53 HOH HOH . H 6 HOH A 48 54 54 HOH HOH . H 6 HOH A 49 55 55 HOH HOH . H 6 HOH A 50 56 56 HOH HOH . H 6 HOH A 51 57 57 HOH HOH . H 6 HOH A 52 58 58 HOH HOH . H 6 HOH A 53 59 59 HOH HOH . H 6 HOH A 54 60 60 HOH HOH . H 6 HOH A 55 61 61 HOH HOH . H 6 HOH A 56 62 62 HOH HOH . H 6 HOH A 57 63 63 HOH HOH . H 6 HOH A 58 64 64 HOH HOH . H 6 HOH A 59 65 65 HOH HOH . H 6 HOH A 60 66 66 HOH HOH . H 6 HOH A 61 67 67 HOH HOH . H 6 HOH A 62 68 68 HOH HOH . H 6 HOH A 63 69 69 HOH HOH . H 6 HOH A 64 70 70 HOH HOH . H 6 HOH A 65 71 71 HOH HOH . H 6 HOH A 66 72 72 HOH HOH . H 6 HOH A 67 74 74 HOH HOH . H 6 HOH A 68 75 75 HOH HOH . H 6 HOH A 69 76 76 HOH HOH . H 6 HOH A 70 77 77 HOH HOH . H 6 HOH A 71 78 78 HOH HOH . H 6 HOH A 72 79 79 HOH HOH . H 6 HOH A 73 80 80 HOH HOH . H 6 HOH A 74 81 81 HOH HOH . H 6 HOH A 75 82 82 HOH HOH . H 6 HOH A 76 83 83 HOH HOH . H 6 HOH A 77 84 84 HOH HOH . H 6 HOH A 78 85 85 HOH HOH . H 6 HOH A 79 86 86 HOH HOH . H 6 HOH A 80 88 88 HOH HOH . H 6 HOH A 81 89 89 HOH HOH . H 6 HOH A 82 91 91 HOH HOH . H 6 HOH A 83 92 92 HOH HOH . H 6 HOH A 84 93 93 HOH HOH . H 6 HOH A 85 94 94 HOH HOH . H 6 HOH A 86 95 95 HOH HOH . H 6 HOH A 87 96 96 HOH HOH . H 6 HOH A 88 97 97 HOH HOH . H 6 HOH A 89 98 98 HOH HOH . H 6 HOH A 90 99 99 HOH HOH . H 6 HOH A 91 100 100 HOH HOH . H 6 HOH A 92 101 101 HOH HOH . H 6 HOH A 93 102 102 HOH HOH . H 6 HOH A 94 103 103 HOH HOH . H 6 HOH A 95 104 104 HOH HOH . H 6 HOH A 96 105 105 HOH HOH . H 6 HOH A 97 106 106 HOH HOH . H 6 HOH A 98 107 107 HOH HOH . H 6 HOH A 99 108 108 HOH HOH . H 6 HOH A 100 109 109 HOH HOH . H 6 HOH A 101 110 110 HOH HOH . H 6 HOH A 102 111 111 HOH HOH . H 6 HOH A 103 112 112 HOH HOH . H 6 HOH A 104 113 113 HOH HOH . H 6 HOH A 105 114 114 HOH HOH . H 6 HOH A 106 116 116 HOH HOH . H 6 HOH A 107 117 117 HOH HOH . H 6 HOH A 108 118 118 HOH HOH . H 6 HOH A 109 119 119 HOH HOH . H 6 HOH A 110 120 120 HOH HOH . H 6 HOH A 111 121 121 HOH HOH . H 6 HOH A 112 122 122 HOH HOH . H 6 HOH A 113 123 123 HOH HOH . H 6 HOH A 114 124 124 HOH HOH . H 6 HOH A 115 125 125 HOH HOH . H 6 HOH A 116 126 126 HOH HOH . H 6 HOH A 117 127 127 HOH HOH . H 6 HOH A 118 128 128 HOH HOH . H 6 HOH A 119 129 129 HOH HOH . H 6 HOH A 120 131 131 HOH HOH . H 6 HOH A 121 132 132 HOH HOH . H 6 HOH A 122 712 1 HOH HOH . H 6 HOH A 123 713 2 HOH HOH . H 6 HOH A 124 714 3 HOH HOH . H 6 HOH A 125 715 4 HOH HOH . I 6 HOH C 1 33 8 HOH HOH . I 6 HOH C 2 43 43 HOH HOH . I 6 HOH C 3 73 73 HOH HOH . I 6 HOH C 4 87 87 HOH HOH . I 6 HOH C 5 90 90 HOH HOH . I 6 HOH C 6 115 115 HOH HOH . I 6 HOH C 7 130 130 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.473 _atom_site.Cartn_y -25.376 _atom_site.Cartn_z -6.884 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 3 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #