data_3NA4 # _model_server_result.job_id jcsydGsxdAkt0NRpkNJzbw _model_server_result.datetime_utc '2025-08-31 13:38:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3na4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 3NA4 # _exptl.entry_id 3NA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NA4 _cell.length_a 29.07 _cell.length_b 50.73 _cell.length_c 71.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 25 A ASN 24 1_555 A N CSO 26 A CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.242 ? covale ? covale2 A C CSO 26 A CSO 25 1_555 A N TYR 27 A TYR 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 251 n n O1 HO1 PE4 sing 252 n n C1 C2 PE4 sing 253 n n C1 H11 PE4 sing 254 n n C1 H12 PE4 sing 255 n n C2 O2 PE4 sing 256 n n C2 H21 PE4 sing 257 n n C2 H22 PE4 sing 258 n n O2 C3 PE4 sing 259 n n C3 C4 PE4 sing 260 n n C3 H31 PE4 sing 261 n n C3 H32 PE4 sing 262 n n C4 O3 PE4 sing 263 n n C4 H41 PE4 sing 264 n n C4 H42 PE4 sing 265 n n O3 C5 PE4 sing 266 n n C5 C6 PE4 sing 267 n n C5 H51 PE4 sing 268 n n C5 H52 PE4 sing 269 n n C6 O4 PE4 sing 270 n n C6 H61 PE4 sing 271 n n C6 H62 PE4 sing 272 n n O4 C7 PE4 sing 273 n n C7 C8 PE4 sing 274 n n C7 H71 PE4 sing 275 n n C7 H72 PE4 sing 276 n n C8 O5 PE4 sing 277 n n C8 H81 PE4 sing 278 n n C8 H82 PE4 sing 279 n n O5 C9 PE4 sing 280 n n C9 C10 PE4 sing 281 n n C9 H91 PE4 sing 282 n n C9 H92 PE4 sing 283 n n C10 O6 PE4 sing 284 n n C10 H101 PE4 sing 285 n n C10 H102 PE4 sing 286 n n O6 C11 PE4 sing 287 n n C11 C12 PE4 sing 288 n n C11 H111 PE4 sing 289 n n C11 H112 PE4 sing 290 n n C12 O7 PE4 sing 291 n n C12 H121 PE4 sing 292 n n C12 H122 PE4 sing 293 n n O7 C13 PE4 sing 294 n n C13 C14 PE4 sing 295 n n C13 H131 PE4 sing 296 n n C13 H132 PE4 sing 297 n n C14 O8 PE4 sing 298 n n C14 H141 PE4 sing 299 n n C14 H142 PE4 sing 300 n n O8 C15 PE4 sing 301 n n C15 C16 PE4 sing 302 n n C15 H151 PE4 sing 303 n n C15 H152 PE4 sing 304 n n C16 H161 PE4 sing 305 n n C16 H162 PE4 sing 306 n n C16 H163 PE4 sing 307 n n # _atom_sites.entry_id 3NA4 _atom_sites.fract_transf_matrix[1][1] 0.0344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE4 A 1 100 1 PE4 PE4 . C 3 HOH A 1 101 1 HOH HOH . C 3 HOH A 2 102 7 HOH HOH . C 3 HOH A 3 103 8 HOH HOH . C 3 HOH A 4 104 10 HOH HOH . C 3 HOH A 5 105 15 HOH HOH . C 3 HOH A 6 106 18 HOH HOH . C 3 HOH A 7 107 19 HOH HOH . C 3 HOH A 8 108 21 HOH HOH . C 3 HOH A 9 109 22 HOH HOH . C 3 HOH A 10 110 23 HOH HOH . C 3 HOH A 11 111 24 HOH HOH . C 3 HOH A 12 112 25 HOH HOH . C 3 HOH A 13 113 26 HOH HOH . C 3 HOH A 14 114 29 HOH HOH . C 3 HOH A 15 115 30 HOH HOH . C 3 HOH A 16 116 31 HOH HOH . C 3 HOH A 17 117 32 HOH HOH . C 3 HOH A 18 118 33 HOH HOH . C 3 HOH A 19 119 34 HOH HOH . C 3 HOH A 20 120 35 HOH HOH . C 3 HOH A 21 121 36 HOH HOH . C 3 HOH A 22 122 37 HOH HOH . C 3 HOH A 23 123 38 HOH HOH . C 3 HOH A 24 124 39 HOH HOH . C 3 HOH A 25 125 40 HOH HOH . C 3 HOH A 26 126 41 HOH HOH . C 3 HOH A 27 127 42 HOH HOH . C 3 HOH A 28 128 43 HOH HOH . C 3 HOH A 29 129 44 HOH HOH . C 3 HOH A 30 130 45 HOH HOH . C 3 HOH A 31 131 46 HOH HOH . C 3 HOH A 32 132 47 HOH HOH . C 3 HOH A 33 133 48 HOH HOH . C 3 HOH A 34 134 50 HOH HOH . C 3 HOH A 35 135 52 HOH HOH . C 3 HOH A 36 136 53 HOH HOH . C 3 HOH A 37 137 54 HOH HOH . C 3 HOH A 38 138 55 HOH HOH . C 3 HOH A 39 139 56 HOH HOH . C 3 HOH A 40 140 59 HOH HOH . C 3 HOH A 41 141 60 HOH HOH . C 3 HOH A 42 142 62 HOH HOH . C 3 HOH A 43 143 64 HOH HOH . C 3 HOH A 44 144 65 HOH HOH . C 3 HOH A 45 145 66 HOH HOH . C 3 HOH A 46 146 67 HOH HOH . C 3 HOH A 47 147 68 HOH HOH . C 3 HOH A 48 148 69 HOH HOH . C 3 HOH A 49 149 70 HOH HOH . C 3 HOH A 50 150 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PE4 . . . B 2 4.978 21.727 -16.608 0.5 38.19 ? C3 PE4 100 A 1 HETATM 2 C C4 PE4 . . . B 2 4.276 22.303 -15.384 0.5 38.86 ? C4 PE4 100 A 1 HETATM 3 O O3 PE4 . . . B 2 4.63 23.677 -15.241 0.5 39.28 ? O3 PE4 100 A 1 HETATM 4 C C5 PE4 . . . B 2 4.217 24.222 -13.979 0.5 38.81 ? C5 PE4 100 A 1 HETATM 5 C C6 PE4 . . . B 2 3.902 25.708 -14.116 0.5 38.31 ? C6 PE4 100 A 1 HETATM 6 O O4 PE4 . . . B 2 3.092 26.169 -13.03 0.5 38.76 ? O4 PE4 100 A 1 HETATM 7 C C7 PE4 . . . B 2 1.699 25.919 -13.254 0.5 38.19 ? C7 PE4 100 A 1 HETATM 8 C C8 PE4 . . . B 2 0.9 26.074 -11.966 0.5 38.14 ? C8 PE4 100 A 1 HETATM 9 O O5 PE4 . . . B 2 0.015 24.961 -11.804 0.5 38.82 ? O5 PE4 100 A 1 HETATM 10 C C9 PE4 . . . B 2 -1.348 25.292 -12.052 0.5 39.06 ? C9 PE4 100 A 1 HETATM 11 C C10 PE4 . . . B 2 -1.939 24.415 -13.146 0.5 39.41 ? C10 PE4 100 A 1 HETATM 12 O O6 PE4 . . . B 2 -3.366 24.525 -13.128 0.5 39.88 ? O6 PE4 100 A 1 HETATM 13 C C11 PE4 . . . B 2 -3.89 25.142 -14.306 0.5 39.91 ? C11 PE4 100 A 1 HETATM 14 C C12 PE4 . . . B 2 -4.048 26.649 -14.125 0.5 40.69 ? C12 PE4 100 A 1 HETATM 15 O O7 PE4 . . . B 2 -3.97 27.303 -15.399 0.5 41.17 ? O7 PE4 100 A 1 HETATM 16 C C13 PE4 . . . B 2 -4.796 28.465 -15.477 0.5 41.31 ? C13 PE4 100 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 722 _model_server_stats.encode_time_ms 56 _model_server_stats.element_count 16 #