data_3NA7 # _model_server_result.job_id wM6lJlA5r0t7I74mA9UYaA _model_server_result.datetime_utc '2025-08-01 00:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3na7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":360}' # _entry.id 3NA7 # _exptl.entry_id 3NA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.66 _cell.angle_gamma 90 _cell.entry_id 3NA7 _cell.length_a 172.72 _cell.length_b 37.951 _cell.length_c 66.056 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 96 A ASN 94 1_555 C MG MG . A MG 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc2 A SG CYS 201 A CYS 199 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 A SG CYS 204 A CYS 202 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 A SG CYS 225 A CYS 223 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A SG CYS 228 A CYS 226 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 C MG MG . A MG 320 1_555 E O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 C MG MG . A MG 320 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 C MG MG . A MG 320 1_555 E O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 3NA7 _atom_sites.fract_transf_matrix[1][1] 0.00579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002183 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 300 300 ZN ZN . C 3 MG A 1 320 320 MG MG . D 4 EPE A 1 360 360 EPE EPE . E 5 HOH A 1 400 400 HOH HOH . E 5 HOH A 2 401 401 HOH HOH . E 5 HOH A 3 402 402 HOH HOH . E 5 HOH A 4 403 403 HOH HOH . E 5 HOH A 5 404 404 HOH HOH . E 5 HOH A 6 405 405 HOH HOH . E 5 HOH A 7 406 406 HOH HOH . E 5 HOH A 8 407 407 HOH HOH . E 5 HOH A 9 408 408 HOH HOH . E 5 HOH A 10 409 409 HOH HOH . E 5 HOH A 11 410 410 HOH HOH . E 5 HOH A 12 411 411 HOH HOH . E 5 HOH A 13 412 412 HOH HOH . E 5 HOH A 14 413 413 HOH HOH . E 5 HOH A 15 414 414 HOH HOH . E 5 HOH A 16 415 415 HOH HOH . E 5 HOH A 17 416 416 HOH HOH . E 5 HOH A 18 417 417 HOH HOH . E 5 HOH A 19 418 418 HOH HOH . E 5 HOH A 20 419 419 HOH HOH . E 5 HOH A 21 420 420 HOH HOH . E 5 HOH A 22 421 421 HOH HOH . E 5 HOH A 23 422 422 HOH HOH . E 5 HOH A 24 423 423 HOH HOH . E 5 HOH A 25 424 424 HOH HOH . E 5 HOH A 26 425 425 HOH HOH . E 5 HOH A 27 426 426 HOH HOH . E 5 HOH A 28 427 427 HOH HOH . E 5 HOH A 29 428 428 HOH HOH . E 5 HOH A 30 429 429 HOH HOH . E 5 HOH A 31 430 430 HOH HOH . E 5 HOH A 32 431 431 HOH HOH . E 5 HOH A 33 432 432 HOH HOH . E 5 HOH A 34 433 433 HOH HOH . E 5 HOH A 35 434 434 HOH HOH . E 5 HOH A 36 435 435 HOH HOH . E 5 HOH A 37 436 436 HOH HOH . E 5 HOH A 38 437 437 HOH HOH . E 5 HOH A 39 438 438 HOH HOH . E 5 HOH A 40 439 439 HOH HOH . E 5 HOH A 41 440 440 HOH HOH . E 5 HOH A 42 441 441 HOH HOH . E 5 HOH A 43 442 442 HOH HOH . E 5 HOH A 44 443 443 HOH HOH . E 5 HOH A 45 444 444 HOH HOH . E 5 HOH A 46 445 445 HOH HOH . E 5 HOH A 47 446 446 HOH HOH . E 5 HOH A 48 447 447 HOH HOH . E 5 HOH A 49 448 448 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 27.833 -1.29 54.942 0.5 67.37 ? N1 EPE 360 A 1 HETATM 2 C C2 EPE . . . D 4 29.121 -1.997 54.86 0.5 66.05 ? C2 EPE 360 A 1 HETATM 3 C C3 EPE . . . D 4 29.34 -2.48 53.429 0.5 63.91 ? C3 EPE 360 A 1 HETATM 4 N N4 EPE . . . D 4 28.117 -2.52 52.645 0.5 63.78 ? N4 EPE 360 A 1 HETATM 5 C C5 EPE . . . D 4 26.848 -2.79 53.294 0.5 64.62 ? C5 EPE 360 A 1 HETATM 6 C C6 EPE . . . D 4 26.762 -2.265 54.72 0.5 65.94 ? C6 EPE 360 A 1 HETATM 7 C C7 EPE . . . D 4 28.225 -2.927 51.262 0.5 63.73 ? C7 EPE 360 A 1 HETATM 8 C C8 EPE . . . D 4 26.869 -2.939 50.569 0.5 64.19 ? C8 EPE 360 A 1 HETATM 9 O O8 EPE . . . D 4 26.883 -3.926 49.565 0.5 64.39 ? O8 EPE 360 A 1 HETATM 10 C C9 EPE . . . D 4 27.669 -0.648 56.258 0.5 69 ? C9 EPE 360 A 1 HETATM 11 C C10 EPE . . . D 4 27.286 0.818 56.077 0.5 70.97 ? C10 EPE 360 A 1 HETATM 12 S S EPE . . . D 4 28.368 1.913 57.033 0.5 73.9 ? S EPE 360 A 1 HETATM 13 O O1S EPE . . . D 4 27.574 2.572 58.065 0.5 70.97 ? O1S EPE 360 A 1 HETATM 14 O O2S EPE . . . D 4 29.017 2.913 56.183 0.5 71.87 ? O2S EPE 360 A 1 HETATM 15 O O3S EPE . . . D 4 29.412 1.101 57.654 0.5 74.6 ? O3S EPE 360 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #