data_3NAB # _model_server_result.job_id TNbOZtwgHKJOKpcwB1sjlA _model_server_result.datetime_utc '2024-11-05 00:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":217}' # _entry.id 3NAB # _exptl.entry_id 3NAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.93 _cell.angle_gamma 90 _cell.entry_id 3NAB _cell.length_a 54.618 _cell.length_b 75.197 _cell.length_c 67.226 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 135 H CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A ND2 ASN 138 L ASN 138 1_555 D ZN ZN . L ZN 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc2 A OD2 ASP 151 L ASP 151 1_555 C ZN ZN . L ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc3 A ND1 HIS 189 L HIS 189 1_555 C ZN ZN . L ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 C ZN ZN . L ZN 215 1_555 E OXT ACT . L ACT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc5 D ZN ZN . L ZN 216 1_555 B NE2 HIS 172 H HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 D ZN ZN . L ZN 216 1_555 I O HOH . H HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc7 B OD2 ASP 55 H ASP 54 1_555 F ZN ZN . H ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3NAB _atom_sites.fract_transf_matrix[1][1] 0.018309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 215 1 ZN ZN . D 3 ZN L 1 216 2 ZN ZN . E 4 ACT L 1 217 1 ACT ACT . F 3 ZN H 1 215 3 ZN ZN . G 3 ZN H 1 216 4 ZN ZN . H 5 HOH L 1 218 1 HOH HOH . H 5 HOH L 2 219 2 HOH HOH . H 5 HOH L 3 220 3 HOH HOH . H 5 HOH L 4 221 5 HOH HOH . H 5 HOH L 5 222 6 HOH HOH . H 5 HOH L 6 223 7 HOH HOH . H 5 HOH L 7 224 8 HOH HOH . H 5 HOH L 8 225 9 HOH HOH . H 5 HOH L 9 226 10 HOH HOH . H 5 HOH L 10 227 11 HOH HOH . H 5 HOH L 11 228 12 HOH HOH . H 5 HOH L 12 229 13 HOH HOH . H 5 HOH L 13 230 14 HOH HOH . H 5 HOH L 14 231 15 HOH HOH . H 5 HOH L 15 232 18 HOH HOH . H 5 HOH L 16 233 20 HOH HOH . H 5 HOH L 17 234 26 HOH HOH . H 5 HOH L 18 235 27 HOH HOH . H 5 HOH L 19 236 30 HOH HOH . H 5 HOH L 20 237 31 HOH HOH . H 5 HOH L 21 238 32 HOH HOH . H 5 HOH L 22 239 33 HOH HOH . H 5 HOH L 23 240 35 HOH HOH . H 5 HOH L 24 241 36 HOH HOH . H 5 HOH L 25 242 37 HOH HOH . H 5 HOH L 26 243 39 HOH HOH . H 5 HOH L 27 244 40 HOH HOH . H 5 HOH L 28 245 41 HOH HOH . H 5 HOH L 29 246 42 HOH HOH . H 5 HOH L 30 247 46 HOH HOH . H 5 HOH L 31 248 47 HOH HOH . H 5 HOH L 32 249 49 HOH HOH . H 5 HOH L 33 250 50 HOH HOH . H 5 HOH L 34 251 59 HOH HOH . H 5 HOH L 35 252 61 HOH HOH . H 5 HOH L 36 253 64 HOH HOH . H 5 HOH L 37 254 67 HOH HOH . H 5 HOH L 38 255 72 HOH HOH . H 5 HOH L 39 256 74 HOH HOH . H 5 HOH L 40 257 75 HOH HOH . H 5 HOH L 41 258 76 HOH HOH . H 5 HOH L 42 259 77 HOH HOH . H 5 HOH L 43 260 78 HOH HOH . H 5 HOH L 44 261 80 HOH HOH . H 5 HOH L 45 262 81 HOH HOH . H 5 HOH L 46 263 82 HOH HOH . H 5 HOH L 47 264 83 HOH HOH . H 5 HOH L 48 265 84 HOH HOH . H 5 HOH L 49 266 85 HOH HOH . H 5 HOH L 50 267 86 HOH HOH . H 5 HOH L 51 268 87 HOH HOH . H 5 HOH L 52 269 90 HOH HOH . H 5 HOH L 53 270 91 HOH HOH . H 5 HOH L 54 271 92 HOH HOH . H 5 HOH L 55 272 93 HOH HOH . H 5 HOH L 56 273 95 HOH HOH . H 5 HOH L 57 274 96 HOH HOH . H 5 HOH L 58 275 97 HOH HOH . H 5 HOH L 59 276 98 HOH HOH . H 5 HOH L 60 277 99 HOH HOH . H 5 HOH L 61 278 102 HOH HOH . H 5 HOH L 62 279 103 HOH HOH . H 5 HOH L 63 280 105 HOH HOH . H 5 HOH L 64 281 106 HOH HOH . H 5 HOH L 65 282 109 HOH HOH . H 5 HOH L 66 283 110 HOH HOH . H 5 HOH L 67 284 111 HOH HOH . H 5 HOH L 68 285 112 HOH HOH . H 5 HOH L 69 286 113 HOH HOH . H 5 HOH L 70 287 114 HOH HOH . H 5 HOH L 71 288 116 HOH HOH . H 5 HOH L 72 289 117 HOH HOH . H 5 HOH L 73 290 118 HOH HOH . H 5 HOH L 74 291 120 HOH HOH . H 5 HOH L 75 292 123 HOH HOH . H 5 HOH L 76 293 124 HOH HOH . H 5 HOH L 77 294 125 HOH HOH . H 5 HOH L 78 295 126 HOH HOH . H 5 HOH L 79 296 127 HOH HOH . H 5 HOH L 80 297 129 HOH HOH . H 5 HOH L 81 298 131 HOH HOH . H 5 HOH L 82 299 133 HOH HOH . H 5 HOH L 83 300 134 HOH HOH . H 5 HOH L 84 301 135 HOH HOH . H 5 HOH L 85 302 136 HOH HOH . H 5 HOH L 86 303 137 HOH HOH . H 5 HOH L 87 304 140 HOH HOH . H 5 HOH L 88 305 141 HOH HOH . H 5 HOH L 89 306 142 HOH HOH . H 5 HOH L 90 307 143 HOH HOH . H 5 HOH L 91 308 144 HOH HOH . H 5 HOH L 92 309 145 HOH HOH . H 5 HOH L 93 310 146 HOH HOH . H 5 HOH L 94 311 151 HOH HOH . H 5 HOH L 95 312 152 HOH HOH . H 5 HOH L 96 313 154 HOH HOH . H 5 HOH L 97 314 155 HOH HOH . H 5 HOH L 98 315 159 HOH HOH . H 5 HOH L 99 316 160 HOH HOH . H 5 HOH L 100 317 163 HOH HOH . H 5 HOH L 101 318 164 HOH HOH . H 5 HOH L 102 319 165 HOH HOH . H 5 HOH L 103 320 166 HOH HOH . H 5 HOH L 104 321 167 HOH HOH . H 5 HOH L 105 322 170 HOH HOH . H 5 HOH L 106 323 171 HOH HOH . H 5 HOH L 107 324 172 HOH HOH . H 5 HOH L 108 325 178 HOH HOH . H 5 HOH L 109 326 179 HOH HOH . H 5 HOH L 110 327 181 HOH HOH . H 5 HOH L 111 328 182 HOH HOH . H 5 HOH L 112 329 183 HOH HOH . H 5 HOH L 113 330 184 HOH HOH . H 5 HOH L 114 331 185 HOH HOH . I 5 HOH H 1 217 4 HOH HOH . I 5 HOH H 2 218 16 HOH HOH . I 5 HOH H 3 219 17 HOH HOH . I 5 HOH H 4 220 19 HOH HOH . I 5 HOH H 5 221 21 HOH HOH . I 5 HOH H 6 222 22 HOH HOH . I 5 HOH H 7 223 23 HOH HOH . I 5 HOH H 8 224 24 HOH HOH . I 5 HOH H 9 225 25 HOH HOH . I 5 HOH H 10 226 28 HOH HOH . I 5 HOH H 11 227 29 HOH HOH . I 5 HOH H 12 228 34 HOH HOH . I 5 HOH H 13 229 38 HOH HOH . I 5 HOH H 14 230 43 HOH HOH . I 5 HOH H 15 231 44 HOH HOH . I 5 HOH H 16 232 45 HOH HOH . I 5 HOH H 17 233 48 HOH HOH . I 5 HOH H 18 234 51 HOH HOH . I 5 HOH H 19 235 52 HOH HOH . I 5 HOH H 20 236 53 HOH HOH . I 5 HOH H 21 237 54 HOH HOH . I 5 HOH H 22 238 55 HOH HOH . I 5 HOH H 23 239 56 HOH HOH . I 5 HOH H 24 240 57 HOH HOH . I 5 HOH H 25 241 58 HOH HOH . I 5 HOH H 26 242 60 HOH HOH . I 5 HOH H 27 243 62 HOH HOH . I 5 HOH H 28 244 63 HOH HOH . I 5 HOH H 29 245 65 HOH HOH . I 5 HOH H 30 246 66 HOH HOH . I 5 HOH H 31 247 68 HOH HOH . I 5 HOH H 32 248 69 HOH HOH . I 5 HOH H 33 249 70 HOH HOH . I 5 HOH H 34 250 71 HOH HOH . I 5 HOH H 35 251 73 HOH HOH . I 5 HOH H 36 252 79 HOH HOH . I 5 HOH H 37 253 88 HOH HOH . I 5 HOH H 38 254 89 HOH HOH . I 5 HOH H 39 255 94 HOH HOH . I 5 HOH H 40 256 100 HOH HOH . I 5 HOH H 41 257 101 HOH HOH . I 5 HOH H 42 258 104 HOH HOH . I 5 HOH H 43 259 107 HOH HOH . I 5 HOH H 44 260 115 HOH HOH . I 5 HOH H 45 261 119 HOH HOH . I 5 HOH H 46 262 121 HOH HOH . I 5 HOH H 47 263 122 HOH HOH . I 5 HOH H 48 264 128 HOH HOH . I 5 HOH H 49 265 130 HOH HOH . I 5 HOH H 50 266 132 HOH HOH . I 5 HOH H 51 267 138 HOH HOH . I 5 HOH H 52 268 139 HOH HOH . I 5 HOH H 53 269 147 HOH HOH . I 5 HOH H 54 270 148 HOH HOH . I 5 HOH H 55 271 149 HOH HOH . I 5 HOH H 56 272 150 HOH HOH . I 5 HOH H 57 273 153 HOH HOH . I 5 HOH H 58 274 156 HOH HOH . I 5 HOH H 59 275 157 HOH HOH . I 5 HOH H 60 276 158 HOH HOH . I 5 HOH H 61 277 161 HOH HOH . I 5 HOH H 62 278 162 HOH HOH . I 5 HOH H 63 279 168 HOH HOH . I 5 HOH H 64 280 169 HOH HOH . I 5 HOH H 65 281 173 HOH HOH . I 5 HOH H 66 282 174 HOH HOH . I 5 HOH H 67 283 175 HOH HOH . I 5 HOH H 68 284 176 HOH HOH . I 5 HOH H 69 285 177 HOH HOH . I 5 HOH H 70 286 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . E 4 -8.99 18.257 0.044 1 33.09 ? C ACT 217 L 1 HETATM 2 O O ACT . . . E 4 -8.494 18.239 1.187 1 33.4 ? O ACT 217 L 1 HETATM 3 O OXT ACT . . . E 4 -8.195 18.318 -0.904 1 28.22 ? OXT ACT 217 L 1 HETATM 4 C CH3 ACT . . . E 4 -10.467 18.214 -0.191 1 37.99 ? CH3 ACT 217 L 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #