data_3NAL # _model_server_result.job_id M2LdTiTXxwcg6zOYo7XC3Q _model_server_result.datetime_utc '2024-11-06 16:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":997}' # _entry.id 3NAL # _exptl.entry_id 3NAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 620.771 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,3aR,4S,6S,6aS,8R,9bS)-6-(acetyloxy)-3,3a-dihydroxy-3,6,9-trimethyl-8-{[(2Z)-2-methylbut-2-enoyl]oxy}-2-oxo-2,3,3a,4,5,6,6a,7,8,9b-decahydroazuleno[4,5-b]furan-4-yl dodecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NAL _cell.length_a 71.33 _cell.length_b 71.33 _cell.length_c 591.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 703 A ASP 703 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc2 A O LEU 711 A LEU 711 1_555 B K K . A K 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.209 ? metalc ? metalc3 A O LYS 712 A LYS 712 1_555 B K K . A K 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.294 ? metalc ? metalc4 A O ALA 714 A ALA 714 1_555 B K K . A K 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc5 A OE1 GLU 732 A GLU 732 1_555 B K K . A K 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 B K K . A K 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.324 ? metalc ? metalc7 B K K . A K 995 1_555 E O HOH . A HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.235 ? metalc ? metalc8 C MG MG . A MG 996 1_555 E O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? # _chem_comp.formula 'C34 H52 O10' _chem_comp.formula_weight 620.771 _chem_comp.id DBK _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,3aR,4S,6S,6aS,8R,9bS)-6-(acetyloxy)-3,3a-dihydroxy-3,6,9-trimethyl-8-{[(2Z)-2-methylbut-2-enoyl]oxy}-2-oxo-2,3,3a,4,5,6,6a,7,8,9b-decahydroazuleno[4,5-b]furan-4-yl dodecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DBK sing 83 n n C1 C5 DBK sing 84 n n C1 C10 DBK sing 85 n n C2 C3 DBK sing 86 n n C3 O3 DBK sing 87 n n C3 C4 DBK sing 88 n n O3 C21 DBK sing 89 n n C4 C5 DBK doub 90 n n C4 C26 DBK sing 91 n n O4 C21 DBK doub 92 n n C5 C6 DBK sing 93 n n O5 C6 DBK sing 94 n n O5 C12 DBK sing 95 n n C6 C7 DBK sing 96 n n O6 C7 DBK sing 97 n n C7 C8 DBK sing 98 n n C7 C11 DBK sing 99 n n O7 C8 DBK sing 100 n n O7 C27 DBK sing 101 n n C8 C9 DBK sing 102 n n O8 C27 DBK doub 103 n n C9 C10 DBK sing 104 n n O9 C10 DBK sing 105 n n O9 C32 DBK sing 106 n n C10 C31 DBK sing 107 n n O10 C32 DBK doub 108 n n C11 O11 DBK sing 109 n n C11 C12 DBK sing 110 n n C11 C34 DBK sing 111 n n C12 O12 DBK doub 112 n n C21 C22 DBK sing 113 n n C22 C23 DBK sing 114 n n C22 C24 DBK doub 115 n n C24 C25 DBK sing 116 n n C27 C28 DBK sing 117 n n C28 C35 DBK sing 118 n n C32 C33 DBK sing 119 n n C35 C36 DBK sing 120 n n C36 C37 DBK sing 121 n n C37 C38 DBK sing 122 n n C38 C39 DBK sing 123 n n C39 C40 DBK sing 124 n n C40 C41 DBK sing 125 z n C41 C42 DBK sing 126 n n C42 C43 DBK sing 127 n n C43 C44 DBK sing 128 n n C1 H1 DBK sing 129 n n C2 H2 DBK sing 130 n n C2 H2A DBK sing 131 n n C3 H3 DBK sing 132 n n C6 H6 DBK sing 133 n n O6 HO6 DBK sing 134 n n C8 H8 DBK sing 135 n n C9 H9 DBK sing 136 n n C9 H9A DBK sing 137 n n O11 HO11 DBK sing 138 n n C23 H23 DBK sing 139 n n C23 H23A DBK sing 140 n n C23 H23B DBK sing 141 n n C24 H24 DBK sing 142 n n C25 H25 DBK sing 143 n n C25 H25A DBK sing 144 n n C25 H25B DBK sing 145 n n C26 H26 DBK sing 146 n n C26 H26A DBK sing 147 n n C26 H26B DBK sing 148 n n C28 H28 DBK sing 149 n n C28 H28A DBK sing 150 n n C31 H31 DBK sing 151 n n C31 H31A DBK sing 152 n n C31 H31B DBK sing 153 n n C33 H33 DBK sing 154 n n C33 H33A DBK sing 155 n n C33 H33B DBK sing 156 n n C34 H34 DBK sing 157 n n C34 H34A DBK sing 158 n n C34 H34B DBK sing 159 n n C35 H35 DBK sing 160 n n C35 H35A DBK sing 161 n n C36 H36 DBK sing 162 n n C36 H36A DBK sing 163 n n C37 H37 DBK sing 164 n n C37 H37A DBK sing 165 n n C38 H38 DBK sing 166 n n C38 H38A DBK sing 167 n n C39 H39 DBK sing 168 n n C39 H39A DBK sing 169 n n C40 H40 DBK sing 170 n n C40 H40A DBK sing 171 n n C41 H41 DBK sing 172 n n C41 H41A DBK sing 173 n n C42 H42 DBK sing 174 n n C42 H42A DBK sing 175 n n C43 H43 DBK sing 176 n n C43 H43A DBK sing 177 n n C44 H44 DBK sing 178 n n C44 H44A DBK sing 179 n n C44 H44B DBK sing 180 n n # _atom_sites.entry_id 3NAL _atom_sites.fract_transf_matrix[1][1] 0.014019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 995 1 K K . C 3 MG A 1 996 2 MG MG . D 4 DBK A 1 997 3 DBK DBT . E 5 HOH A 1 998 1 HOH HOH . E 5 HOH A 2 999 2 HOH HOH . E 5 HOH A 3 1000 3 HOH HOH . E 5 HOH A 4 1001 4 HOH HOH . E 5 HOH A 5 1002 5 HOH HOH . E 5 HOH A 6 1003 6 HOH HOH . E 5 HOH A 7 1004 7 HOH HOH . E 5 HOH A 8 1005 8 HOH HOH . E 5 HOH A 9 1006 9 HOH HOH . E 5 HOH A 10 1007 10 HOH HOH . E 5 HOH A 11 1008 11 HOH HOH . E 5 HOH A 12 1009 12 HOH HOH . E 5 HOH A 13 1010 13 HOH HOH . E 5 HOH A 14 1011 14 HOH HOH . E 5 HOH A 15 1012 15 HOH HOH . E 5 HOH A 16 1013 16 HOH HOH . E 5 HOH A 17 1014 17 HOH HOH . E 5 HOH A 18 1015 18 HOH HOH . E 5 HOH A 19 1016 19 HOH HOH . E 5 HOH A 20 1017 20 HOH HOH . E 5 HOH A 21 1018 21 HOH HOH . E 5 HOH A 22 1019 22 HOH HOH . E 5 HOH A 23 1020 23 HOH HOH . E 5 HOH A 24 1021 24 HOH HOH . E 5 HOH A 25 1022 25 HOH HOH . E 5 HOH A 26 1023 26 HOH HOH . E 5 HOH A 27 1024 27 HOH HOH . E 5 HOH A 28 1025 28 HOH HOH . E 5 HOH A 29 1026 29 HOH HOH . E 5 HOH A 30 1027 30 HOH HOH . E 5 HOH A 31 1028 31 HOH HOH . E 5 HOH A 32 1029 32 HOH HOH . E 5 HOH A 33 1030 33 HOH HOH . E 5 HOH A 34 1031 34 HOH HOH . E 5 HOH A 35 1032 35 HOH HOH . E 5 HOH A 36 1033 36 HOH HOH . E 5 HOH A 37 1034 37 HOH HOH . E 5 HOH A 38 1035 38 HOH HOH . E 5 HOH A 39 1036 39 HOH HOH . E 5 HOH A 40 1037 40 HOH HOH . E 5 HOH A 41 1038 41 HOH HOH . E 5 HOH A 42 1039 42 HOH HOH . E 5 HOH A 43 1040 43 HOH HOH . E 5 HOH A 44 1041 44 HOH HOH . E 5 HOH A 45 1042 45 HOH HOH . E 5 HOH A 46 1043 46 HOH HOH . E 5 HOH A 47 1044 47 HOH HOH . E 5 HOH A 48 1045 48 HOH HOH . E 5 HOH A 49 1046 49 HOH HOH . E 5 HOH A 50 1047 50 HOH HOH . E 5 HOH A 51 1048 51 HOH HOH . E 5 HOH A 52 1049 52 HOH HOH . E 5 HOH A 53 1050 53 HOH HOH . E 5 HOH A 54 1051 54 HOH HOH . E 5 HOH A 55 1052 55 HOH HOH . E 5 HOH A 56 1053 56 HOH HOH . E 5 HOH A 57 1054 57 HOH HOH . E 5 HOH A 58 1055 58 HOH HOH . E 5 HOH A 59 1056 59 HOH HOH . E 5 HOH A 60 1057 60 HOH HOH . E 5 HOH A 61 1058 61 HOH HOH . E 5 HOH A 62 1059 62 HOH HOH . E 5 HOH A 63 1060 63 HOH HOH . E 5 HOH A 64 1061 64 HOH HOH . E 5 HOH A 65 1062 65 HOH HOH . E 5 HOH A 66 1063 66 HOH HOH . E 5 HOH A 67 1064 67 HOH HOH . E 5 HOH A 68 1065 68 HOH HOH . E 5 HOH A 69 1066 69 HOH HOH . E 5 HOH A 70 1067 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DBK . . . D 4 -4.269 9.192 84.89 1 82.52 ? C1 DBK 997 A 1 HETATM 2 C C2 DBK . . . D 4 -4.024 8.918 83.404 1 84.58 ? C2 DBK 997 A 1 HETATM 3 C C3 DBK . . . D 4 -2.567 9.278 83.096 1 85.25 ? C3 DBK 997 A 1 HETATM 4 O O3 DBK . . . D 4 -2.467 10.441 82.258 1 87.97 ? O3 DBK 997 A 1 HETATM 5 C C4 DBK . . . D 4 -1.951 9.605 84.454 1 84.13 ? C4 DBK 997 A 1 HETATM 6 O O4 DBK . . . D 4 -2.083 8.864 80.724 1 91.07 ? O4 DBK 997 A 1 HETATM 7 C C5 DBK . . . D 4 -2.918 9.623 85.448 1 83.7 ? C5 DBK 997 A 1 HETATM 8 O O5 DBK . . . D 4 -1.565 9.112 87.416 1 87.06 ? O5 DBK 997 A 1 HETATM 9 C C6 DBK . . . D 4 -2.57 9.989 86.887 1 84.89 ? C6 DBK 997 A 1 HETATM 10 O O6 DBK . . . D 4 -4.164 8.367 87.74 1 84.31 ? O6 DBK 997 A 1 HETATM 11 C C7 DBK . . . D 4 -3.742 9.729 87.825 1 84.72 ? C7 DBK 997 A 1 HETATM 12 O O7 DBK . . . D 4 -4.521 12.054 87.535 1 83.11 ? O7 DBK 997 A 1 HETATM 13 C C8 DBK . . . D 4 -4.923 10.68 87.63 1 83.15 ? C8 DBK 997 A 1 HETATM 14 O O8 DBK . . . D 4 -5.416 11.977 89.57 1 84.24 ? O8 DBK 997 A 1 HETATM 15 C C9 DBK . . . D 4 -5.895 10.277 86.517 1 81.95 ? C9 DBK 997 A 1 HETATM 16 O O9 DBK . . . D 4 -6.37 9.87 84.203 1 79.26 ? O9 DBK 997 A 1 HETATM 17 C C10 DBK . . . D 4 -5.331 10.275 85.093 1 80.99 ? C10 DBK 997 A 1 HETATM 18 O O10 DBK . . . D 4 -7.407 11.773 84.799 1 76.89 ? O10 DBK 997 A 1 HETATM 19 C C11 DBK . . . D 4 -2.991 9.932 89.137 1 85.87 ? C11 DBK 997 A 1 HETATM 20 O O11 DBK . . . D 4 -2.801 11.33 89.367 1 86.48 ? O11 DBK 997 A 1 HETATM 21 C C12 DBK . . . D 4 -1.658 9.285 88.763 1 86.59 ? C12 DBK 997 A 1 HETATM 22 O O12 DBK . . . D 4 -0.801 8.914 89.565 1 87.97 ? O12 DBK 997 A 1 HETATM 23 C C21 DBK . . . D 4 -2.241 10.058 80.972 1 89.08 ? C21 DBK 997 A 1 HETATM 24 C C22 DBK . . . D 4 -2.106 11.088 79.846 1 89.18 ? C22 DBK 997 A 1 HETATM 25 C C23 DBK . . . D 4 -2.173 10.614 78.393 1 89.95 ? C23 DBK 997 A 1 HETATM 26 C C24 DBK . . . D 4 -1.856 12.427 80.111 1 88.52 ? C24 DBK 997 A 1 HETATM 27 C C25 DBK . . . D 4 -1.694 12.923 81.55 1 88.96 ? C25 DBK 997 A 1 HETATM 28 C C26 DBK . . . D 4 -0.468 9.893 84.699 1 83.93 ? C26 DBK 997 A 1 HETATM 29 C C27 DBK . . . D 4 -4.857 12.657 88.703 1 83.43 ? C27 DBK 997 A 1 HETATM 30 C C28 DBK . . . D 4 -4.556 14.136 88.951 1 82.97 ? C28 DBK 997 A 1 HETATM 31 C C31 DBK . . . D 4 -4.808 11.658 84.702 1 78.54 ? C31 DBK 997 A 1 HETATM 32 C C32 DBK . . . D 4 -7.427 10.733 84.155 1 76.41 ? C32 DBK 997 A 1 HETATM 33 C C33 DBK . . . D 4 -8.649 10.332 83.333 1 74.01 ? C33 DBK 997 A 1 HETATM 34 C C34 DBK . . . D 4 -3.66 9.227 90.319 1 86.21 ? C34 DBK 997 A 1 HETATM 35 C C35 DBK . . . D 4 -3.049 14.398 88.997 1 83.18 ? C35 DBK 997 A 1 HETATM 36 C C36 DBK . . . D 4 -2.709 15.861 89.296 1 83.29 ? C36 DBK 997 A 1 HETATM 37 C C37 DBK . . . D 4 -1.191 16.053 89.233 1 83.18 ? C37 DBK 997 A 1 HETATM 38 C C38 DBK . . . D 4 -0.775 17.501 89.497 1 81.82 ? C38 DBK 997 A 1 HETATM 39 C C39 DBK . . . D 4 -1.227 17.935 90.893 1 82.3 ? C39 DBK 997 A 1 HETATM 40 C C40 DBK . . . D 4 -0.888 19.396 91.197 1 83.68 ? C40 DBK 997 A 1 HETATM 41 C C41 DBK . . . D 4 0.617 19.675 91.245 1 83.52 ? C41 DBK 997 A 1 HETATM 42 C C42 DBK . . . D 4 0.871 21.037 91.897 1 82.97 ? C42 DBK 997 A 1 HETATM 43 C C43 DBK . . . D 4 2.36 21.312 92.115 1 82.69 ? C43 DBK 997 A 1 HETATM 44 C C44 DBK . . . D 4 2.571 22.621 92.881 1 80.61 ? C44 DBK 997 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #