data_3NAM # _model_server_result.job_id OK4PJDZnRqi4g3oCMG34VA _model_server_result.datetime_utc '2024-11-06 01:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":997}' # _entry.id 3NAM # _exptl.entry_id 3NAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.574 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,3aR,4S,6S,6aS,8R,9R,9aR,9bS)-6-(acetyloxy)-4-(butanoyloxy)-3,3a-dihydroxy-3,6,9-trimethyl-2-oxododecahydroazuleno[4,5-b]furan-8-yl (2Z)-2-methylbut-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NAM _cell.length_a 71.545 _cell.length_b 71.545 _cell.length_c 591.227 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 703 A ASP 703 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc2 A OD2 ASP 707 A ASP 707 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 A O LEU 711 A LEU 711 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 A O LYS 712 A LYS 712 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A O ALA 714 A ALA 714 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 C MG MG . A MG 996 1_555 F O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C26 H38 O10' _chem_comp.formula_weight 510.574 _chem_comp.id OTK _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,3aR,4S,6S,6aS,8R,9R,9aR,9bS)-6-(acetyloxy)-4-(butanoyloxy)-3,3a-dihydroxy-3,6,9-trimethyl-2-oxododecahydroazuleno[4,5-b]furan-8-yl (2Z)-2-methylbut-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OTK sing 237 n n C1 C5 OTK sing 238 n n C1 C10 OTK sing 239 n n C2 C3 OTK sing 240 n n C3 O3 OTK sing 241 n n C3 C4 OTK sing 242 n n O3 C21 OTK sing 243 n n C4 C5 OTK sing 244 n n C4 C26 OTK sing 245 n n O4 C21 OTK doub 246 n n C5 C6 OTK sing 247 n n O5 C6 OTK sing 248 n n O5 C12 OTK sing 249 n n C6 C7 OTK sing 250 n n O6 C7 OTK sing 251 n n C7 C8 OTK sing 252 n n C7 C11 OTK sing 253 n n O7 C8 OTK sing 254 n n O7 C27 OTK sing 255 n n C8 C9 OTK sing 256 n n O8 C27 OTK doub 257 n n C9 C10 OTK sing 258 n n O9 C10 OTK sing 259 n n O9 C32 OTK sing 260 n n C10 C31 OTK sing 261 n n O10 C32 OTK doub 262 n n C11 O11 OTK sing 263 n n C11 C12 OTK sing 264 n n C11 C34 OTK sing 265 n n C12 O12 OTK doub 266 n n C21 C22 OTK sing 267 n n C22 C23 OTK sing 268 n n C22 C24 OTK doub 269 n n C24 C25 OTK sing 270 n n C27 C28 OTK sing 271 n n C28 C29 OTK sing 272 n n C29 C30 OTK sing 273 n n C32 C33 OTK sing 274 n n C1 H1 OTK sing 275 n n C2 H2 OTK sing 276 n n C2 H2A OTK sing 277 n n C3 H3 OTK sing 278 n n C4 H4 OTK sing 279 n n C5 H5 OTK sing 280 n n C6 H6 OTK sing 281 z n O6 HO6 OTK sing 282 n n C8 H8 OTK sing 283 n n C9 H9 OTK sing 284 n n C9 H9A OTK sing 285 n n O11 HO11 OTK sing 286 n n C23 H23 OTK sing 287 n n C23 H23A OTK sing 288 n n C23 H23B OTK sing 289 n n C24 H24 OTK sing 290 n n C25 H25 OTK sing 291 n n C25 H25A OTK sing 292 n n C25 H25B OTK sing 293 n n C26 H26 OTK sing 294 n n C26 H26A OTK sing 295 n n C26 H26B OTK sing 296 n n C28 H28 OTK sing 297 n n C28 H28A OTK sing 298 n n C29 H29 OTK sing 299 n n C29 H29A OTK sing 300 n n C30 H30 OTK sing 301 n n C30 H30A OTK sing 302 n n C30 H30B OTK sing 303 n n C31 H31 OTK sing 304 n n C31 H31A OTK sing 305 n n C31 H31B OTK sing 306 n n C33 H33 OTK sing 307 n n C33 H33A OTK sing 308 n n C33 H33B OTK sing 309 n n C34 H34 OTK sing 310 n n C34 H34A OTK sing 311 n n C34 H34B OTK sing 312 n n # _atom_sites.entry_id 3NAM _atom_sites.fract_transf_matrix[1][1] 0.013977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 995 1 NA NA . C 3 MG A 1 996 2 MG MG . D 4 OTK A 1 997 3 OTK OTG . E 5 PTY A 1 998 4 PTY PTY . F 6 HOH A 1 999 1 HOH HOH . F 6 HOH A 2 1000 2 HOH HOH . F 6 HOH A 3 1001 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OTK . . . D 4 -4.578 9.453 84.822 1 140.87 ? C1 OTK 997 A 1 HETATM 2 C C2 OTK . . . D 4 -4.143 9.076 83.402 1 141.3 ? C2 OTK 997 A 1 HETATM 3 C C3 OTK . . . D 4 -2.85 9.857 83.143 1 142.42 ? C3 OTK 997 A 1 HETATM 4 O O3 OTK . . . D 4 -3.039 10.983 82.276 1 145.19 ? O3 OTK 997 A 1 HETATM 5 C C4 OTK . . . D 4 -2.395 10.395 84.502 1 141.77 ? C4 OTK 997 A 1 HETATM 6 O O4 OTK . . . D 4 -2.019 9.667 80.782 1 147.69 ? O4 OTK 997 A 1 HETATM 7 C C5 OTK . . . D 4 -3.204 9.567 85.5 1 141.97 ? C5 OTK 997 A 1 HETATM 8 O O5 OTK . . . D 4 -2.073 9.599 87.693 1 143.67 ? O5 OTK 997 A 1 HETATM 9 C C6 OTK . . . D 4 -3.158 10.138 86.918 1 143.53 ? C6 OTK 997 A 1 HETATM 10 O O6 OTK . . . D 4 -5.025 8.643 87.352 1 145.58 ? O6 OTK 997 A 1 HETATM 11 C C7 OTK . . . D 4 -4.421 9.879 87.744 1 144.36 ? C7 OTK 997 A 1 HETATM 12 O O7 OTK . . . D 4 -4.671 12.283 87.249 1 144.94 ? O7 OTK 997 A 1 HETATM 13 C C8 OTK . . . D 4 -5.377 11.046 87.457 1 144.18 ? C8 OTK 997 A 1 HETATM 14 O O8 OTK . . . D 4 -5.023 12.722 89.43 1 146.59 ? O8 OTK 997 A 1 HETATM 15 C C9 OTK . . . D 4 -6.27 10.746 86.246 1 141.82 ? C9 OTK 997 A 1 HETATM 16 O O9 OTK . . . D 4 -6.584 10.247 83.934 1 138.15 ? O9 OTK 997 A 1 HETATM 17 C C10 OTK . . . D 4 -5.574 10.616 84.882 1 140.11 ? C10 OTK 997 A 1 HETATM 18 O O10 OTK . . . D 4 -7.671 12.18 84.33 1 136.28 ? O10 OTK 997 A 1 HETATM 19 C C11 OTK . . . D 4 -3.92 9.752 89.191 1 144.42 ? C11 OTK 997 A 1 HETATM 20 O O11 OTK . . . D 4 -4.423 10.805 90.015 1 144.75 ? O11 OTK 997 A 1 HETATM 21 C C12 OTK . . . D 4 -2.404 9.872 88.987 1 143.91 ? C12 OTK 997 A 1 HETATM 22 O O12 OTK . . . D 4 -1.606 10.241 89.843 1 143.37 ? O12 OTK 997 A 1 HETATM 23 C C21 OTK . . . D 4 -2.522 10.754 81.028 1 146.18 ? C21 OTK 997 A 1 HETATM 24 C C22 OTK . . . D 4 -2.575 11.826 79.954 1 145.76 ? C22 OTK 997 A 1 HETATM 25 C C23 OTK . . . D 4 -2.558 11.405 78.497 1 146.07 ? C23 OTK 997 A 1 HETATM 26 C C24 OTK . . . D 4 -2.64 13.209 80.262 1 144.43 ? C24 OTK 997 A 1 HETATM 27 C C25 OTK . . . D 4 -2.664 13.731 81.684 1 144.11 ? C25 OTK 997 A 1 HETATM 28 C C26 OTK . . . D 4 -0.891 10.178 84.692 1 141.01 ? C26 OTK 997 A 1 HETATM 29 C C27 OTK . . . D 4 -4.5 13.046 88.365 1 145.77 ? C27 OTK 997 A 1 HETATM 30 C C28 OTK . . . D 4 -3.686 14.338 88.254 1 145.51 ? C28 OTK 997 A 1 HETATM 31 C C29 OTK . . . D 4 -3.674 15.133 89.563 1 144.9 ? C29 OTK 997 A 1 HETATM 32 C C30 OTK . . . D 4 -2.836 16.408 89.435 1 143.08 ? C30 OTK 997 A 1 HETATM 33 C C31 OTK . . . D 4 -4.944 11.946 84.453 1 139.1 ? C31 OTK 997 A 1 HETATM 34 C C32 OTK . . . D 4 -7.621 11.107 83.731 1 136.69 ? C32 OTK 997 A 1 HETATM 35 C C33 OTK . . . D 4 -8.737 10.708 82.766 1 137.06 ? C33 OTK 997 A 1 HETATM 36 C C34 OTK . . . D 4 -4.276 8.398 89.81 1 143.74 ? C34 OTK 997 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 36 #