data_3NAM # _model_server_result.job_id P8lYdFbeLDuI3TJ3fOhgsg _model_server_result.datetime_utc '2024-11-06 01:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":998}' # _entry.id 3NAM # _exptl.entry_id 3NAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NAM _cell.length_a 71.545 _cell.length_b 71.545 _cell.length_c 591.227 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 703 A ASP 703 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc2 A OD2 ASP 707 A ASP 707 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 A O LEU 711 A LEU 711 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 A O LYS 712 A LYS 712 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A O ALA 714 A ALA 714 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 B NA NA . A NA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc7 C MG MG . A MG 996 1_555 F O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 353 n n C1 C6 PTY sing 354 n n C1 HC11 PTY sing 355 n n C1 HC12 PTY sing 356 n n C2 C3 PTY sing 357 n n C2 N1 PTY sing 358 n n C2 HC21 PTY sing 359 n n C2 HC22 PTY sing 360 n n C3 O11 PTY sing 361 n n C3 HC31 PTY sing 362 n n C3 HC32 PTY sing 363 n n O4 C30 PTY sing 364 n n C5 C6 PTY sing 365 n n C5 O14 PTY sing 366 n n C5 HC51 PTY sing 367 n n C5 HC52 PTY sing 368 n n C6 O7 PTY sing 369 n n C6 HC6 PTY sing 370 n n O7 C8 PTY sing 371 n n C8 O10 PTY doub 372 n n C8 C11 PTY sing 373 n n C11 C12 PTY sing 374 n n C11 H111 PTY sing 375 n n C11 H112 PTY sing 376 n n C12 C13 PTY sing 377 n n C12 H121 PTY sing 378 n n C12 H122 PTY sing 379 n n C13 C14 PTY sing 380 n n C13 H131 PTY sing 381 n n C13 H132 PTY sing 382 n n C14 C15 PTY sing 383 n n C14 H141 PTY sing 384 n n C14 H142 PTY sing 385 n n C15 C16 PTY sing 386 n n C15 H151 PTY sing 387 n n C15 H152 PTY sing 388 n n C16 C17 PTY sing 389 n n C16 H161 PTY sing 390 n n C16 H162 PTY sing 391 n n C17 C18 PTY sing 392 n n C17 H171 PTY sing 393 n n C17 H172 PTY sing 394 n n C18 C19 PTY sing 395 n n C18 H181 PTY sing 396 n n C18 H182 PTY sing 397 n n C19 C20 PTY sing 398 n n C19 H191 PTY sing 399 n n C19 H192 PTY sing 400 n n C20 C21 PTY sing 401 n n C20 H201 PTY sing 402 n n C20 H202 PTY sing 403 n n C21 C22 PTY sing 404 n n C21 H211 PTY sing 405 n n C21 H212 PTY sing 406 n n C22 C23 PTY sing 407 n n C22 H221 PTY sing 408 n n C22 H222 PTY sing 409 n n C23 C24 PTY sing 410 n n C23 H231 PTY sing 411 n n C23 H232 PTY sing 412 n n C24 C25 PTY sing 413 n n C24 H241 PTY sing 414 n n C24 H242 PTY sing 415 n n C25 C26 PTY sing 416 n n C25 H251 PTY sing 417 n n C25 H252 PTY sing 418 n n C26 C27 PTY sing 419 n n C26 H261 PTY sing 420 n n C26 H262 PTY sing 421 n n C27 C28 PTY sing 422 n n C27 H271 PTY sing 423 n n C27 H272 PTY sing 424 n n C28 C29 PTY sing 425 n n C28 H281 PTY sing 426 n n C28 H282 PTY sing 427 n n C29 H291 PTY sing 428 n n C29 H292 PTY sing 429 n n C29 H293 PTY sing 430 n n C30 C31 PTY sing 431 n n C30 O30 PTY doub 432 n n C31 C32 PTY sing 433 n n C31 H311 PTY sing 434 n n C31 H312 PTY sing 435 n n C32 C33 PTY sing 436 n n C32 H321 PTY sing 437 n n C32 H322 PTY sing 438 n n C33 C34 PTY sing 439 n n C33 H331 PTY sing 440 n n C33 H332 PTY sing 441 n n C34 C35 PTY sing 442 n n C34 H341 PTY sing 443 n n C34 H342 PTY sing 444 n n C35 C36 PTY sing 445 n n C35 H351 PTY sing 446 n n C35 H352 PTY sing 447 n n C36 C37 PTY sing 448 n n C36 H361 PTY sing 449 n n C36 H362 PTY sing 450 n n C37 C38 PTY sing 451 n n C37 H371 PTY sing 452 n n C37 H372 PTY sing 453 n n C38 C39 PTY sing 454 n n C38 H381 PTY sing 455 n n C38 H382 PTY sing 456 n n C39 C40 PTY sing 457 n n C39 H391 PTY sing 458 n n C39 H392 PTY sing 459 n n C40 C41 PTY sing 460 n n C40 H401 PTY sing 461 n n C40 H402 PTY sing 462 n n C41 C42 PTY sing 463 n n C41 H411 PTY sing 464 n n C41 H412 PTY sing 465 n n C42 C43 PTY sing 466 n n C42 H421 PTY sing 467 n n C42 H422 PTY sing 468 n n C43 C44 PTY sing 469 n n C43 H431 PTY sing 470 n n C43 H432 PTY sing 471 n n C44 H441 PTY sing 472 n n C44 H442 PTY sing 473 n n C44 H443 PTY sing 474 n n P1 O11 PTY sing 475 n n P1 O12 PTY sing 476 n n P1 O13 PTY doub 477 n n P1 O14 PTY sing 478 n n O12 H12O PTY sing 479 n n N1 HN11 PTY sing 480 n n N1 HN12 PTY sing 481 n n # _atom_sites.entry_id 3NAM _atom_sites.fract_transf_matrix[1][1] 0.013977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 995 1 NA NA . C 3 MG A 1 996 2 MG MG . D 4 OTK A 1 997 3 OTK OTG . E 5 PTY A 1 998 4 PTY PTY . F 6 HOH A 1 999 1 HOH HOH . F 6 HOH A 2 1000 2 HOH HOH . F 6 HOH A 3 1001 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . E 5 6.485 29.314 86.011 1 123.03 ? C1 PTY 998 A 1 HETATM 2 C C2 PTY . . . E 5 10.162 26.481 89.816 1 124.24 ? C2 PTY 998 A 1 HETATM 3 C C3 PTY . . . E 5 8.809 26.976 89.302 1 126.65 ? C3 PTY 998 A 1 HETATM 4 O O4 PTY . . . E 5 5.842 29.61 84.763 1 122.46 ? O4 PTY 998 A 1 HETATM 5 C C5 PTY . . . E 5 5.437 29.271 88.282 1 126.57 ? C5 PTY 998 A 1 HETATM 6 C C6 PTY . . . E 5 5.79 30.147 87.078 1 124.54 ? C6 PTY 998 A 1 HETATM 7 O O7 PTY . . . E 5 4.577 30.672 86.518 1 124.61 ? O7 PTY 998 A 1 HETATM 8 C C8 PTY . . . E 5 4.357 31.96 86.912 1 123.82 ? C8 PTY 998 A 1 HETATM 9 O O10 PTY . . . E 5 5.162 32.509 87.653 1 122.59 ? O10 PTY 998 A 1 HETATM 10 C C11 PTY . . . E 5 3.121 32.709 86.406 1 123.87 ? C11 PTY 998 A 1 HETATM 11 C C12 PTY . . . E 5 3.387 34.215 86.348 1 123.47 ? C12 PTY 998 A 1 HETATM 12 C C30 PTY . . . E 5 6.498 28.955 83.669 1 121.41 ? C30 PTY 998 A 1 HETATM 13 C C31 PTY . . . E 5 7.075 30.013 82.727 1 120.02 ? C31 PTY 998 A 1 HETATM 14 O O30 PTY . . . E 5 5.523 28.198 82.944 1 121.95 ? O30 PTY 998 A 1 HETATM 15 C C32 PTY . . . E 5 6.167 30.255 81.517 1 117.42 ? C32 PTY 998 A 1 HETATM 16 C C33 PTY . . . E 5 4.806 30.858 81.872 1 116.33 ? C33 PTY 998 A 1 HETATM 17 C C34 PTY . . . E 5 3.978 31.017 80.594 1 114.85 ? C34 PTY 998 A 1 HETATM 18 C C35 PTY . . . E 5 2.595 31.613 80.866 1 113.13 ? C35 PTY 998 A 1 HETATM 19 P P1 PTY . . . E 5 6.443 27.735 90.174 1 131.14 ? P1 PTY 998 A 1 HETATM 20 O O11 PTY . . . E 5 7.89 27.058 90.395 1 129.9 ? O11 PTY 998 A 1 HETATM 21 O O12 PTY . . . E 5 5.413 26.547 89.819 1 132.17 ? O12 PTY 998 A 1 HETATM 22 O O13 PTY . . . E 5 5.979 28.521 91.341 1 130.76 ? O13 PTY 998 A 1 HETATM 23 O O14 PTY . . . E 5 6.589 28.631 88.84 1 129.41 ? O14 PTY 998 A 1 HETATM 24 N N1 PTY . . . E 5 9.987 25.162 90.439 1 122.44 ? N1 PTY 998 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #