data_3NAY # _model_server_result.job_id 01k0dZZDMSTGgwnxwcP42A _model_server_result.datetime_utc '2024-10-12 13:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3NAY # _exptl.entry_id 3NAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-cyclopropylethylidene)-9-(1H-pyrazol-4-yl)-6-{[(1R)-1,2,2-trimethylpropyl]amino}benzo[c][1,6]naphthyridin-1(4H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NAY _cell.length_a 89.677 _cell.length_b 89.677 _cell.length_c 178 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 189 A ASN 240 1_555 A N SEP 190 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C SEP 190 A SEP 241 1_555 A N PHE 191 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C ASN 189 B ASN 240 1_555 B N SEP 190 B SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 B C SEP 190 B SEP 241 1_555 B N PHE 191 B PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C26 H29 N5 O' _chem_comp.formula_weight 427.541 _chem_comp.id MP6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-cyclopropylethylidene)-9-(1H-pyrazol-4-yl)-6-{[(1R)-1,2,2-trimethylpropyl]amino}benzo[c][1,6]naphthyridin-1(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NAY _atom_sites.fract_transf_matrix[1][1] 0.011151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MP6 A 1 1 1 MP6 MP6 . D 2 MP6 B 1 2 2 MP6 MP6 . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 5 5 HOH HOH . E 3 HOH A 5 6 6 HOH HOH . E 3 HOH A 6 7 7 HOH HOH . E 3 HOH A 7 8 8 HOH HOH . E 3 HOH A 8 9 9 HOH HOH . E 3 HOH A 9 10 10 HOH HOH . E 3 HOH A 10 11 11 HOH HOH . E 3 HOH A 11 12 12 HOH HOH . E 3 HOH A 12 13 13 HOH HOH . E 3 HOH A 13 14 14 HOH HOH . E 3 HOH A 14 15 15 HOH HOH . E 3 HOH A 15 16 16 HOH HOH . E 3 HOH A 16 17 17 HOH HOH . E 3 HOH A 17 18 18 HOH HOH . E 3 HOH A 18 19 19 HOH HOH . E 3 HOH A 19 20 20 HOH HOH . E 3 HOH A 20 21 21 HOH HOH . E 3 HOH A 21 23 23 HOH HOH . E 3 HOH A 22 24 24 HOH HOH . E 3 HOH A 23 25 25 HOH HOH . E 3 HOH A 24 26 26 HOH HOH . E 3 HOH A 25 28 28 HOH HOH . E 3 HOH A 26 29 29 HOH HOH . E 3 HOH A 27 30 30 HOH HOH . E 3 HOH A 28 31 31 HOH HOH . E 3 HOH A 29 32 32 HOH HOH . E 3 HOH A 30 33 33 HOH HOH . E 3 HOH A 31 34 34 HOH HOH . E 3 HOH A 32 35 35 HOH HOH . E 3 HOH A 33 36 36 HOH HOH . E 3 HOH A 34 37 37 HOH HOH . E 3 HOH A 35 38 38 HOH HOH . E 3 HOH A 36 39 39 HOH HOH . E 3 HOH A 37 41 41 HOH HOH . E 3 HOH A 38 42 42 HOH HOH . E 3 HOH A 39 43 43 HOH HOH . E 3 HOH A 40 44 44 HOH HOH . E 3 HOH A 41 45 45 HOH HOH . E 3 HOH A 42 46 46 HOH HOH . E 3 HOH A 43 47 47 HOH HOH . E 3 HOH A 44 48 48 HOH HOH . E 3 HOH A 45 49 49 HOH HOH . E 3 HOH A 46 50 50 HOH HOH . E 3 HOH A 47 51 51 HOH HOH . E 3 HOH A 48 363 1 HOH HOH . E 3 HOH A 49 364 52 HOH HOH . E 3 HOH A 50 365 53 HOH HOH . E 3 HOH A 51 366 54 HOH HOH . E 3 HOH A 52 367 55 HOH HOH . E 3 HOH A 53 368 56 HOH HOH . E 3 HOH A 54 369 57 HOH HOH . E 3 HOH A 55 370 58 HOH HOH . E 3 HOH A 56 371 59 HOH HOH . E 3 HOH A 57 372 60 HOH HOH . E 3 HOH A 58 373 61 HOH HOH . E 3 HOH A 59 374 62 HOH HOH . E 3 HOH A 60 375 63 HOH HOH . E 3 HOH A 61 376 64 HOH HOH . E 3 HOH A 62 377 65 HOH HOH . E 3 HOH A 63 378 68 HOH HOH . E 3 HOH A 64 379 70 HOH HOH . E 3 HOH A 65 380 71 HOH HOH . E 3 HOH A 66 381 72 HOH HOH . E 3 HOH A 67 382 74 HOH HOH . E 3 HOH A 68 383 75 HOH HOH . E 3 HOH A 69 384 76 HOH HOH . E 3 HOH A 70 385 77 HOH HOH . E 3 HOH A 71 386 78 HOH HOH . E 3 HOH A 72 387 80 HOH HOH . E 3 HOH A 73 388 81 HOH HOH . E 3 HOH A 74 389 82 HOH HOH . E 3 HOH A 75 390 83 HOH HOH . E 3 HOH A 76 391 84 HOH HOH . E 3 HOH A 77 392 87 HOH HOH . E 3 HOH A 78 393 88 HOH HOH . E 3 HOH A 79 394 89 HOH HOH . E 3 HOH A 80 395 91 HOH HOH . E 3 HOH A 81 396 92 HOH HOH . E 3 HOH A 82 397 93 HOH HOH . E 3 HOH A 83 398 95 HOH HOH . E 3 HOH A 84 399 96 HOH HOH . E 3 HOH A 85 400 99 HOH HOH . E 3 HOH A 86 401 101 HOH HOH . E 3 HOH A 87 402 102 HOH HOH . E 3 HOH A 88 403 103 HOH HOH . E 3 HOH A 89 404 104 HOH HOH . E 3 HOH A 90 405 105 HOH HOH . E 3 HOH A 91 406 107 HOH HOH . E 3 HOH A 92 407 108 HOH HOH . E 3 HOH A 93 408 110 HOH HOH . E 3 HOH A 94 409 112 HOH HOH . E 3 HOH A 95 410 114 HOH HOH . E 3 HOH A 96 411 115 HOH HOH . E 3 HOH A 97 412 116 HOH HOH . E 3 HOH A 98 413 118 HOH HOH . E 3 HOH A 99 414 119 HOH HOH . E 3 HOH A 100 415 120 HOH HOH . E 3 HOH A 101 416 122 HOH HOH . E 3 HOH A 102 417 123 HOH HOH . E 3 HOH A 103 418 124 HOH HOH . E 3 HOH A 104 419 125 HOH HOH . E 3 HOH A 105 420 127 HOH HOH . E 3 HOH A 106 421 128 HOH HOH . E 3 HOH A 107 422 130 HOH HOH . E 3 HOH A 108 423 132 HOH HOH . E 3 HOH A 109 424 134 HOH HOH . E 3 HOH A 110 425 135 HOH HOH . E 3 HOH A 111 426 136 HOH HOH . E 3 HOH A 112 427 138 HOH HOH . E 3 HOH A 113 428 139 HOH HOH . E 3 HOH A 114 429 141 HOH HOH . E 3 HOH A 115 430 142 HOH HOH . E 3 HOH A 116 431 144 HOH HOH . E 3 HOH A 117 432 145 HOH HOH . E 3 HOH A 118 433 146 HOH HOH . E 3 HOH A 119 434 147 HOH HOH . E 3 HOH A 120 435 148 HOH HOH . E 3 HOH A 121 436 149 HOH HOH . F 3 HOH B 1 22 22 HOH HOH . F 3 HOH B 2 27 27 HOH HOH . F 3 HOH B 3 40 40 HOH HOH . F 3 HOH B 4 363 66 HOH HOH . F 3 HOH B 5 364 67 HOH HOH . F 3 HOH B 6 365 69 HOH HOH . F 3 HOH B 7 366 73 HOH HOH . F 3 HOH B 8 367 79 HOH HOH . F 3 HOH B 9 368 85 HOH HOH . F 3 HOH B 10 369 86 HOH HOH . F 3 HOH B 11 370 90 HOH HOH . F 3 HOH B 12 371 94 HOH HOH . F 3 HOH B 13 372 97 HOH HOH . F 3 HOH B 14 373 98 HOH HOH . F 3 HOH B 15 374 100 HOH HOH . F 3 HOH B 16 375 106 HOH HOH . F 3 HOH B 17 376 111 HOH HOH . F 3 HOH B 18 377 113 HOH HOH . F 3 HOH B 19 378 117 HOH HOH . F 3 HOH B 20 379 121 HOH HOH . F 3 HOH B 21 380 126 HOH HOH . F 3 HOH B 22 381 129 HOH HOH . F 3 HOH B 23 382 131 HOH HOH . F 3 HOH B 24 383 133 HOH HOH . F 3 HOH B 25 384 137 HOH HOH . F 3 HOH B 26 385 140 HOH HOH . F 3 HOH B 27 386 143 HOH HOH . F 3 HOH B 28 387 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MP6 . . . D 2 -6.445 -56.039 4.261 1 57.9 ? C MP6 2 B 1 HETATM 2 N N MP6 . . . D 2 -6.906 -56.894 5.199 1 57.97 ? N MP6 2 B 1 HETATM 3 O O MP6 . . . D 2 -6.768 -60.938 2.564 1 61.75 ? O MP6 2 B 1 HETATM 4 C C1 MP6 . . . D 2 -6.002 -56.502 2.977 1 59.78 ? C1 MP6 2 B 1 HETATM 5 C C2 MP6 . . . D 2 -6.132 -57.921 2.69 1 60.14 ? C2 MP6 2 B 1 HETATM 6 C C3 MP6 . . . D 2 -5.664 -58.349 1.399 1 60.6 ? C3 MP6 2 B 1 HETATM 7 C C4 MP6 . . . D 2 -5.087 -57.48 0.449 1 62.35 ? C4 MP6 2 B 1 HETATM 8 C C5 MP6 . . . D 2 -4.978 -56.114 0.748 1 61.65 ? C5 MP6 2 B 1 HETATM 9 C C6 MP6 . . . D 2 -5.436 -55.626 1.981 1 60.94 ? C6 MP6 2 B 1 HETATM 10 C C7 MP6 . . . D 2 -6.707 -58.784 3.712 1 60.12 ? C7 MP6 2 B 1 HETATM 11 C C8 MP6 . . . D 2 -7.072 -58.196 4.955 1 58.55 ? C8 MP6 2 B 1 HETATM 12 C C9 MP6 . . . D 2 -7.668 -58.967 6.085 1 58.52 ? C9 MP6 2 B 1 HETATM 13 C C10 MP6 . . . D 2 -7.892 -60.292 5.911 1 59.16 ? C10 MP6 2 B 1 HETATM 14 N N11 MP6 . . . D 2 -7.598 -60.914 4.712 1 60.31 ? N11 MP6 2 B 1 HETATM 15 C C12 MP6 . . . D 2 -6.984 -60.29 3.59 1 61.55 ? C12 MP6 2 B 1 HETATM 16 N N13 MP6 . . . D 2 -6.405 -54.694 4.605 1 55.72 ? N13 MP6 2 B 1 HETATM 17 C C14 MP6 . . . D 2 -6.878 -54.225 5.914 1 51.75 ? C14 MP6 2 B 1 HETATM 18 C C15 MP6 . . . D 2 -8.182 -53.424 5.747 1 49.66 ? C15 MP6 2 B 1 HETATM 19 C C16 MP6 . . . D 2 -5.658 -53.627 6.74 1 46.36 ? C16 MP6 2 B 1 HETATM 20 C C17 MP6 . . . D 2 -6.108 -53.254 8.161 1 47.13 ? C17 MP6 2 B 1 HETATM 21 C C18 MP6 . . . D 2 -4.569 -54.719 6.918 1 41.99 ? C18 MP6 2 B 1 HETATM 22 C C19 MP6 . . . D 2 -5.037 -52.394 5.987 1 42.29 ? C19 MP6 2 B 1 HETATM 23 C C20 MP6 . . . D 2 -7.889 -58.359 7.345 1 57.92 ? C20 MP6 2 B 1 HETATM 24 C C21 MP6 . . . D 2 -8.074 -57.844 8.414 1 58.78 ? C21 MP6 2 B 1 HETATM 25 C C22 MP6 . . . D 2 -8.262 -57.158 9.676 1 58.33 ? C22 MP6 2 B 1 HETATM 26 C C23 MP6 . . . D 2 -7.092 -56.434 10.3 1 58.61 ? C23 MP6 2 B 1 HETATM 27 C C24 MP6 . . . D 2 -8.164 -55.647 9.627 1 58.2 ? C24 MP6 2 B 1 HETATM 28 C C25 MP6 . . . D 2 -4.598 -58.047 -0.787 1 65.97 ? C25 MP6 2 B 1 HETATM 29 C C26 MP6 . . . D 2 -3.566 -57.515 -1.543 1 66.93 ? C26 MP6 2 B 1 HETATM 30 N N27 MP6 . . . D 2 -3.388 -58.356 -2.588 1 67.5 ? N27 MP6 2 B 1 HETATM 31 N N28 MP6 . . . D 2 -4.219 -59.415 -2.583 1 67.75 ? N28 MP6 2 B 1 HETATM 32 C C29 MP6 . . . D 2 -4.948 -59.229 -1.483 1 67.37 ? C29 MP6 2 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #