data_3NB5 # _model_server_result.job_id UoL8zuBGoxjAmQI1gm-5fg _model_server_result.datetime_utc '2024-12-21 14:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 3NB5 # _exptl.entry_id 3NB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.89 _cell.angle_gamma 90 _cell.entry_id 3NB5 _cell.length_a 42.67 _cell.length_b 41.54 _cell.length_c 72.47 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 B ZN ZN . A ZN 261 1_555 C NAK R21 . A R21 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3NB5 _atom_sites.fract_transf_matrix[1][1] 0.023436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006231 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 261 261 ZN ZN . C 3 R21 A 1 300 300 R21 R21 . D 4 GOL A 1 301 301 GOL GOL . E 4 GOL A 1 302 302 GOL GOL . F 4 GOL A 1 303 303 GOL GOL . G 5 HOH A 1 262 1 HOH TIP . G 5 HOH A 2 263 2 HOH TIP . G 5 HOH A 3 264 3 HOH TIP . G 5 HOH A 4 265 4 HOH TIP . G 5 HOH A 5 266 5 HOH TIP . G 5 HOH A 6 267 6 HOH TIP . G 5 HOH A 7 268 7 HOH TIP . G 5 HOH A 8 269 8 HOH TIP . G 5 HOH A 9 270 9 HOH TIP . G 5 HOH A 10 271 10 HOH TIP . G 5 HOH A 11 272 11 HOH TIP . G 5 HOH A 12 273 12 HOH TIP . G 5 HOH A 13 274 13 HOH TIP . G 5 HOH A 14 275 14 HOH TIP . G 5 HOH A 15 276 15 HOH TIP . G 5 HOH A 16 277 16 HOH TIP . G 5 HOH A 17 278 17 HOH TIP . G 5 HOH A 18 279 18 HOH TIP . G 5 HOH A 19 280 19 HOH TIP . G 5 HOH A 20 281 20 HOH TIP . G 5 HOH A 21 282 21 HOH TIP . G 5 HOH A 22 283 22 HOH TIP . G 5 HOH A 23 284 23 HOH TIP . G 5 HOH A 24 285 24 HOH TIP . G 5 HOH A 25 286 25 HOH TIP . G 5 HOH A 26 287 26 HOH TIP . G 5 HOH A 27 288 27 HOH TIP . G 5 HOH A 28 289 28 HOH TIP . G 5 HOH A 29 290 29 HOH TIP . G 5 HOH A 30 291 30 HOH TIP . G 5 HOH A 31 292 31 HOH TIP . G 5 HOH A 32 293 32 HOH TIP . G 5 HOH A 33 294 33 HOH TIP . G 5 HOH A 34 295 34 HOH TIP . G 5 HOH A 35 296 35 HOH TIP . G 5 HOH A 36 297 36 HOH TIP . G 5 HOH A 37 298 37 HOH TIP . G 5 HOH A 38 299 38 HOH TIP . G 5 HOH A 39 304 39 HOH TIP . G 5 HOH A 40 305 40 HOH TIP . G 5 HOH A 41 306 41 HOH TIP . G 5 HOH A 42 307 42 HOH TIP . G 5 HOH A 43 308 43 HOH TIP . G 5 HOH A 44 309 44 HOH TIP . G 5 HOH A 45 310 45 HOH TIP . G 5 HOH A 46 311 46 HOH TIP . G 5 HOH A 47 312 47 HOH TIP . G 5 HOH A 48 313 48 HOH TIP . G 5 HOH A 49 314 49 HOH TIP . G 5 HOH A 50 315 50 HOH TIP . G 5 HOH A 51 316 51 HOH TIP . G 5 HOH A 52 317 52 HOH TIP . G 5 HOH A 53 318 53 HOH TIP . G 5 HOH A 54 319 54 HOH TIP . G 5 HOH A 55 320 55 HOH TIP . G 5 HOH A 56 321 56 HOH TIP . G 5 HOH A 57 322 57 HOH TIP . G 5 HOH A 58 323 58 HOH TIP . G 5 HOH A 59 324 59 HOH TIP . G 5 HOH A 60 325 60 HOH TIP . G 5 HOH A 61 326 61 HOH TIP . G 5 HOH A 62 327 62 HOH TIP . G 5 HOH A 63 328 63 HOH TIP . G 5 HOH A 64 329 64 HOH TIP . G 5 HOH A 65 330 65 HOH TIP . G 5 HOH A 66 331 66 HOH TIP . G 5 HOH A 67 332 67 HOH TIP . G 5 HOH A 68 333 68 HOH TIP . G 5 HOH A 69 334 69 HOH TIP . G 5 HOH A 70 335 70 HOH TIP . G 5 HOH A 71 336 71 HOH TIP . G 5 HOH A 72 337 72 HOH TIP . G 5 HOH A 73 338 73 HOH TIP . G 5 HOH A 74 339 74 HOH TIP . G 5 HOH A 75 340 75 HOH TIP . G 5 HOH A 76 341 76 HOH TIP . G 5 HOH A 77 342 77 HOH TIP . G 5 HOH A 78 343 78 HOH TIP . G 5 HOH A 79 344 79 HOH TIP . G 5 HOH A 80 345 80 HOH TIP . G 5 HOH A 81 346 81 HOH TIP . G 5 HOH A 82 347 82 HOH TIP . G 5 HOH A 83 348 83 HOH TIP . G 5 HOH A 84 349 84 HOH TIP . G 5 HOH A 85 350 85 HOH TIP . G 5 HOH A 86 351 86 HOH TIP . G 5 HOH A 87 352 87 HOH TIP . G 5 HOH A 88 353 88 HOH TIP . G 5 HOH A 89 354 89 HOH TIP . G 5 HOH A 90 355 90 HOH TIP . G 5 HOH A 91 356 91 HOH TIP . G 5 HOH A 92 357 92 HOH TIP . G 5 HOH A 93 358 93 HOH TIP . G 5 HOH A 94 359 94 HOH TIP . G 5 HOH A 95 360 95 HOH TIP . G 5 HOH A 96 361 96 HOH TIP . G 5 HOH A 97 362 97 HOH TIP . G 5 HOH A 98 363 98 HOH TIP . G 5 HOH A 99 364 99 HOH TIP . G 5 HOH A 100 365 100 HOH TIP . G 5 HOH A 101 366 101 HOH TIP . G 5 HOH A 102 367 102 HOH TIP . G 5 HOH A 103 368 103 HOH TIP . G 5 HOH A 104 369 104 HOH TIP . G 5 HOH A 105 370 105 HOH TIP . G 5 HOH A 106 371 106 HOH TIP . G 5 HOH A 107 372 107 HOH TIP . G 5 HOH A 108 373 108 HOH TIP . G 5 HOH A 109 374 109 HOH TIP . G 5 HOH A 110 375 110 HOH TIP . G 5 HOH A 111 376 111 HOH TIP . G 5 HOH A 112 377 112 HOH TIP . G 5 HOH A 113 378 113 HOH TIP . G 5 HOH A 114 379 114 HOH TIP . G 5 HOH A 115 380 115 HOH TIP . G 5 HOH A 116 381 116 HOH TIP . G 5 HOH A 117 382 117 HOH TIP . G 5 HOH A 118 383 118 HOH TIP . G 5 HOH A 119 384 119 HOH TIP . G 5 HOH A 120 385 120 HOH TIP . G 5 HOH A 121 386 121 HOH TIP . G 5 HOH A 122 387 122 HOH TIP . G 5 HOH A 123 388 123 HOH TIP . G 5 HOH A 124 389 124 HOH TIP . G 5 HOH A 125 390 125 HOH TIP . G 5 HOH A 126 391 126 HOH TIP . G 5 HOH A 127 392 127 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 17.016 1.408 11.797 1 8.56 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . F 4 18.31 1.299 11.199 1 7.79 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . F 4 16.229 2.531 11.118 1 7.81 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . F 4 16.099 2.248 9.723 1 7.63 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . F 4 16.962 3.862 11.297 1 10.63 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . F 4 16.205 4.904 10.676 1 12.33 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 997 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 6 #