data_3NBL # _model_server_result.job_id DE5jfg3sZV-F_FG9-fU6hw _model_server_result.datetime_utc '2025-01-12 13:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3NBL # _exptl.entry_id 3NBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NBL _cell.length_a 49.383 _cell.length_b 68.102 _cell.length_c 75.652 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id DXF _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id DXF _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id OG _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 42 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 84 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.354 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H18 N4 O8 S' _chem_comp.formula_weight 426.401 _chem_comp.id DXF _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Cefuroxime, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAK DXF sing 83 n y CAI CAJ DXF doub 84 n y CAK CBA DXF doub 85 n y CAJ OAS DXF sing 86 n y OAD CAU DXF doub 87 n n CBA OAS DXF sing 88 n y CBA CAY DXF sing 89 n n NAN CAY DXF doub 90 z n NAN OAQ DXF sing 91 n n CAU OAR DXF sing 92 n n CAU NAB DXF sing 93 n n CAA OAQ DXF sing 94 n n CAY CAW DXF sing 95 n n OAR CAL DXF sing 96 n n CAL CAX DXF sing 97 n n CAW N DXF sing 98 n n CAW OAF DXF doub 99 n n CAM CAX DXF sing 100 n n CAM SAT DXF sing 101 n n N CA DXF sing 102 n n CAX CAZ DXF doub 103 n n OAG CAV DXF doub 104 n n O C DXF doub 105 n n CAZ CAV DXF sing 106 n n CAZ NAP DXF sing 107 n n SAT CB DXF sing 108 n n CAV OAE DXF sing 109 n n CA C DXF sing 110 n n CA CB DXF sing 111 n n NAP CB DXF sing 112 n n C H1 DXF sing 113 n n N H3 DXF sing 114 n n CA H5 DXF sing 115 n n CB H6 DXF sing 116 n n CAA H7 DXF sing 117 n n CAA H8 DXF sing 118 n n CAA H9 DXF sing 119 n n NAB H10 DXF sing 120 n n NAB H11 DXF sing 121 n n OAE H12 DXF sing 122 n n CAI H13 DXF sing 123 n n CAJ H14 DXF sing 124 n n CAK H15 DXF sing 125 n n CAL H16 DXF sing 126 n n CAM H17 DXF sing 127 n n CAM H18 DXF sing 128 n n CAL H2 DXF sing 129 n n NAP H4 DXF sing 130 n n # _atom_sites.entry_id 3NBL _atom_sites.fract_transf_matrix[1][1] 0.02025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DXF A 1 1 1 DXF DXF . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 308 1 HOH HOH . C 3 HOH A 43 309 43 HOH HOH . C 3 HOH A 44 310 44 HOH HOH . C 3 HOH A 45 311 45 HOH HOH . C 3 HOH A 46 312 46 HOH HOH . C 3 HOH A 47 313 47 HOH HOH . C 3 HOH A 48 314 48 HOH HOH . C 3 HOH A 49 315 49 HOH HOH . C 3 HOH A 50 316 50 HOH HOH . C 3 HOH A 51 317 51 HOH HOH . C 3 HOH A 52 318 52 HOH HOH . C 3 HOH A 53 319 53 HOH HOH . C 3 HOH A 54 320 54 HOH HOH . C 3 HOH A 55 321 55 HOH HOH . C 3 HOH A 56 322 56 HOH HOH . C 3 HOH A 57 323 57 HOH HOH . C 3 HOH A 58 324 58 HOH HOH . C 3 HOH A 59 325 59 HOH HOH . C 3 HOH A 60 326 60 HOH HOH . C 3 HOH A 61 327 61 HOH HOH . C 3 HOH A 62 328 62 HOH HOH . C 3 HOH A 63 329 63 HOH HOH . C 3 HOH A 64 330 64 HOH HOH . C 3 HOH A 65 331 65 HOH HOH . C 3 HOH A 66 332 66 HOH HOH . C 3 HOH A 67 333 67 HOH HOH . C 3 HOH A 68 334 68 HOH HOH . C 3 HOH A 69 335 69 HOH HOH . C 3 HOH A 70 336 70 HOH HOH . C 3 HOH A 71 337 71 HOH HOH . C 3 HOH A 72 338 72 HOH HOH . C 3 HOH A 73 339 73 HOH HOH . C 3 HOH A 74 340 74 HOH HOH . C 3 HOH A 75 341 75 HOH HOH . C 3 HOH A 76 342 76 HOH HOH . C 3 HOH A 77 343 77 HOH HOH . C 3 HOH A 78 344 78 HOH HOH . C 3 HOH A 79 345 79 HOH HOH . C 3 HOH A 80 346 80 HOH HOH . C 3 HOH A 81 347 81 HOH HOH . C 3 HOH A 82 348 82 HOH HOH . C 3 HOH A 83 349 83 HOH HOH . C 3 HOH A 84 350 84 HOH HOH . C 3 HOH A 85 351 85 HOH HOH . C 3 HOH A 86 352 86 HOH HOH . C 3 HOH A 87 353 87 HOH HOH . C 3 HOH A 88 354 88 HOH HOH . C 3 HOH A 89 355 89 HOH HOH . C 3 HOH A 90 356 90 HOH HOH . C 3 HOH A 91 357 91 HOH HOH . C 3 HOH A 92 358 92 HOH HOH . C 3 HOH A 93 359 93 HOH HOH . C 3 HOH A 94 360 94 HOH HOH . C 3 HOH A 95 361 95 HOH HOH . C 3 HOH A 96 362 96 HOH HOH . C 3 HOH A 97 363 97 HOH HOH . C 3 HOH A 98 364 98 HOH HOH . C 3 HOH A 99 365 99 HOH HOH . C 3 HOH A 100 366 100 HOH HOH . C 3 HOH A 101 367 101 HOH HOH . C 3 HOH A 102 368 102 HOH HOH . C 3 HOH A 103 369 103 HOH HOH . C 3 HOH A 104 370 104 HOH HOH . C 3 HOH A 105 371 105 HOH HOH . C 3 HOH A 106 372 106 HOH HOH . C 3 HOH A 107 373 107 HOH HOH . C 3 HOH A 108 374 108 HOH HOH . C 3 HOH A 109 375 109 HOH HOH . C 3 HOH A 110 376 110 HOH HOH . C 3 HOH A 111 377 111 HOH HOH . C 3 HOH A 112 378 112 HOH HOH . C 3 HOH A 113 379 113 HOH HOH . C 3 HOH A 114 380 114 HOH HOH . C 3 HOH A 115 381 115 HOH HOH . C 3 HOH A 116 382 116 HOH HOH . C 3 HOH A 117 383 117 HOH HOH . C 3 HOH A 118 384 118 HOH HOH . C 3 HOH A 119 385 119 HOH HOH . C 3 HOH A 120 386 120 HOH HOH . C 3 HOH A 121 387 121 HOH HOH . C 3 HOH A 122 388 122 HOH HOH . C 3 HOH A 123 389 123 HOH HOH . C 3 HOH A 124 390 124 HOH HOH . C 3 HOH A 125 391 125 HOH HOH . C 3 HOH A 126 392 126 HOH HOH . C 3 HOH A 127 393 127 HOH HOH . C 3 HOH A 128 394 128 HOH HOH . C 3 HOH A 129 395 129 HOH HOH . C 3 HOH A 130 396 130 HOH HOH . C 3 HOH A 131 397 131 HOH HOH . C 3 HOH A 132 398 132 HOH HOH . C 3 HOH A 133 399 133 HOH HOH . C 3 HOH A 134 400 134 HOH HOH . C 3 HOH A 135 401 135 HOH HOH . C 3 HOH A 136 402 136 HOH HOH . C 3 HOH A 137 403 137 HOH HOH . C 3 HOH A 138 404 138 HOH HOH . C 3 HOH A 139 405 139 HOH HOH . C 3 HOH A 140 406 140 HOH HOH . C 3 HOH A 141 407 141 HOH HOH . C 3 HOH A 142 408 142 HOH HOH . C 3 HOH A 143 409 143 HOH HOH . C 3 HOH A 144 410 144 HOH HOH . C 3 HOH A 145 411 145 HOH HOH . C 3 HOH A 146 412 146 HOH HOH . C 3 HOH A 147 413 147 HOH HOH . C 3 HOH A 148 414 148 HOH HOH . C 3 HOH A 149 415 149 HOH HOH . C 3 HOH A 150 416 150 HOH HOH . C 3 HOH A 151 417 151 HOH HOH . C 3 HOH A 152 418 152 HOH HOH . C 3 HOH A 153 419 153 HOH HOH . C 3 HOH A 154 420 154 HOH HOH . C 3 HOH A 155 421 155 HOH HOH . C 3 HOH A 156 422 156 HOH HOH . C 3 HOH A 157 423 157 HOH HOH . C 3 HOH A 158 424 158 HOH HOH . C 3 HOH A 159 425 159 HOH HOH . C 3 HOH A 160 426 160 HOH HOH . C 3 HOH A 161 427 161 HOH HOH . C 3 HOH A 162 428 162 HOH HOH . C 3 HOH A 163 429 163 HOH HOH . C 3 HOH A 164 430 164 HOH HOH . C 3 HOH A 165 431 165 HOH HOH . C 3 HOH A 166 432 166 HOH HOH . C 3 HOH A 167 433 167 HOH HOH . C 3 HOH A 168 434 168 HOH HOH . C 3 HOH A 169 435 169 HOH HOH . C 3 HOH A 170 436 170 HOH HOH . C 3 HOH A 171 437 171 HOH HOH . C 3 HOH A 172 438 172 HOH HOH . C 3 HOH A 173 439 173 HOH HOH . C 3 HOH A 174 440 174 HOH HOH . C 3 HOH A 175 441 175 HOH HOH . C 3 HOH A 176 442 176 HOH HOH . C 3 HOH A 177 443 177 HOH HOH . C 3 HOH A 178 444 178 HOH HOH . C 3 HOH A 179 445 179 HOH HOH . C 3 HOH A 180 446 180 HOH HOH . C 3 HOH A 181 447 181 HOH HOH . C 3 HOH A 182 448 182 HOH HOH . C 3 HOH A 183 449 183 HOH HOH . C 3 HOH A 184 450 184 HOH HOH . C 3 HOH A 185 451 185 HOH HOH . C 3 HOH A 186 452 186 HOH HOH . C 3 HOH A 187 453 187 HOH HOH . C 3 HOH A 188 454 188 HOH HOH . C 3 HOH A 189 455 189 HOH HOH . C 3 HOH A 190 456 190 HOH HOH . C 3 HOH A 191 457 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C DXF . . . B 2 -11.521 -11.366 5.149 1 16.47 ? C DXF 1 A 1 HETATM 2 N N DXF . . . B 2 -10.01 -12.18 3.344 1 18.33 ? N DXF 1 A 1 HETATM 3 O O DXF . . . B 2 -12.357 -10.624 4.272 1 15.54 ? O DXF 1 A 1 HETATM 4 C CA DXF . . . B 2 -10.309 -11.889 4.716 1 16.93 ? CA DXF 1 A 1 HETATM 5 C CB DXF . . . B 2 -9.304 -10.837 5.178 1 17.05 ? CB DXF 1 A 1 HETATM 6 C CAA DXF . . . B 2 -10.4 -16.828 1.299 1 31.34 ? CAA DXF 1 A 1 HETATM 7 N NAB DXF . . . B 2 -7.781 -4.504 1.941 1 31 ? NAB DXF 1 A 1 HETATM 8 O OAD DXF . . . B 2 -7.829 -5.316 -0.144 1 32.14 ? OAD DXF 1 A 1 HETATM 9 O OAE DXF . . . B 2 -11.094 -7.143 5.607 1 21.69 ? OAE DXF 1 A 1 HETATM 10 O OAF DXF . . . B 2 -9.357 -14.162 3.961 1 18.74 ? OAF DXF 1 A 1 HETATM 11 O OAG DXF . . . B 2 -10.583 -6.413 3.702 1 20.9 ? OAG DXF 1 A 1 HETATM 12 C CAI DXF . . . B 2 -9.1 -11.43 -1.33 1 26.8 ? CAI DXF 1 A 1 HETATM 13 C CAJ DXF . . . B 2 -8.467 -10.788 -0.348 1 26.86 ? CAJ DXF 1 A 1 HETATM 14 C CAK DXF . . . B 2 -9.564 -12.599 -0.876 1 26.52 ? CAK DXF 1 A 1 HETATM 15 C CAL DXF . . . B 2 -8.451 -7.16 2.529 1 24.46 ? CAL DXF 1 A 1 HETATM 16 C CAM DXF . . . B 2 -7.716 -9.71 3.051 1 19.76 ? CAM DXF 1 A 1 HETATM 17 N NAN DXF . . . B 2 -9.2 -14.922 0.86 1 27.67 ? NAN DXF 1 A 1 HETATM 18 N NAP DXF . . . B 2 -9.913 -9.508 5.114 1 16.91 ? NAP DXF 1 A 1 HETATM 19 O OAQ DXF . . . B 2 -9.238 -16.049 1.637 1 31.16 ? OAQ DXF 1 A 1 HETATM 20 O OAR DXF . . . B 2 -7.574 -6.841 1.521 1 29.69 ? OAR DXF 1 A 1 HETATM 21 O OAS DXF . . . B 2 -8.544 -11.573 0.764 1 26.22 ? OAS DXF 1 A 1 HETATM 22 S SAT DXF . . . B 2 -7.659 -10.951 4.426 1 14.64 ? SAT DXF 1 A 1 HETATM 23 C CAU DXF . . . B 2 -7.735 -5.525 1.071 1 31.32 ? CAU DXF 1 A 1 HETATM 24 C CAV DXF . . . B 2 -10.485 -7.254 4.545 1 19.49 ? CAV DXF 1 A 1 HETATM 25 C CAW DXF . . . B 2 -9.594 -13.338 2.948 1 19.54 ? CAW DXF 1 A 1 HETATM 26 C CAX DXF . . . B 2 -8.597 -8.482 3.346 1 20.69 ? CAX DXF 1 A 1 HETATM 27 C CAY DXF . . . B 2 -9.505 -13.754 1.428 1 22.59 ? CAY DXF 1 A 1 HETATM 28 C CAZ DXF . . . B 2 -9.61 -8.48 4.317 1 19.55 ? CAZ DXF 1 A 1 HETATM 29 C CBA DXF . . . B 2 -9.261 -12.674 0.413 1 24.99 ? CBA DXF 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #