data_3NBP # _model_server_result.job_id hIw1j6GaGMprSPJTxL0wtw _model_server_result.datetime_utc '2025-01-18 14:40:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":562}' # _entry.id 3NBP # _exptl.entry_id 3NBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.567 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-{[4-(4-cyano-2,6-dimethylphenoxy)pyrimidin-2-yl]amino}piperidin-1-yl)benzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NBP _cell.length_a 118.686 _cell.length_b 152.869 _cell.length_c 154.464 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc2 A OE1 GLU 478 A GLU 478 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 A OE2 GLU 478 A GLU 478 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C24 H26 N6 O3 S' _chem_comp.formula_weight 478.567 _chem_comp.id JGZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-{[4-(4-cyano-2,6-dimethylphenoxy)pyrimidin-2-yl]amino}piperidin-1-yl)benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 JGZ doub 173 n y C1 N6 JGZ sing 174 n y C1 O7 JGZ sing 175 n n C2 C3 JGZ sing 176 n y C3 N4 JGZ doub 177 n y N4 C5 JGZ sing 178 n y C5 N6 JGZ doub 179 n y C5 N9 JGZ sing 180 n n O7 C8 JGZ sing 181 n n C8 C22 JGZ doub 182 n y C8 C26 JGZ sing 183 n y N9 C10 JGZ sing 184 n n C10 C11 JGZ sing 185 n n C10 C15 JGZ sing 186 n n C11 C12 JGZ sing 187 n n C12 N13 JGZ sing 188 n n N13 C14 JGZ sing 189 n n N13 C16 JGZ sing 190 n n C14 C15 JGZ sing 191 n n C16 C17 JGZ doub 192 n y C16 C21 JGZ sing 193 n y C17 C18 JGZ sing 194 n y C18 C19 JGZ doub 195 n y C19 C20 JGZ sing 196 n y C19 S31 JGZ sing 197 n n C20 C21 JGZ doub 198 n y C22 C23 JGZ sing 199 n y C22 C28 JGZ sing 200 n n C23 C24 JGZ doub 201 n y C24 C25 JGZ sing 202 n y C24 C29 JGZ sing 203 n n C25 C26 JGZ doub 204 n y C26 C27 JGZ sing 205 n n C29 N30 JGZ trip 206 n n S31 N32 JGZ sing 207 n n S31 O33 JGZ doub 208 n n S31 O34 JGZ doub 209 n n C2 H2 JGZ sing 210 n n C3 H3 JGZ sing 211 n n N9 HN9 JGZ sing 212 n n C10 H10 JGZ sing 213 n n C11 H11 JGZ sing 214 n n C11 H11A JGZ sing 215 n n C12 H12 JGZ sing 216 n n C12 H12A JGZ sing 217 n n C14 H14 JGZ sing 218 n n C14 H14A JGZ sing 219 n n C15 H15 JGZ sing 220 n n C15 H15A JGZ sing 221 n n C17 H17 JGZ sing 222 n n C18 H18 JGZ sing 223 n n C20 H20 JGZ sing 224 n n C21 H21 JGZ sing 225 n n C23 H23 JGZ sing 226 n n C25 H25 JGZ sing 227 n n C27 H27 JGZ sing 228 n n C27 H27A JGZ sing 229 n n C27 H27B JGZ sing 230 n n C28 H28 JGZ sing 231 n n C28 H28A JGZ sing 232 n n C28 H28B JGZ sing 233 n n N32 HN32 JGZ sing 234 n n N32 HN3A JGZ sing 235 n n # _atom_sites.entry_id 3NBP _atom_sites.fract_transf_matrix[1][1] 0.008426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 601 601 MN MN . D 3 MN A 1 602 602 MN MN . E 4 JGZ A 1 562 1 JGZ JGZ . F 5 HOH A 1 563 2 HOH HOH . F 5 HOH A 2 564 3 HOH HOH . F 5 HOH A 3 565 5 HOH HOH . F 5 HOH A 4 566 7 HOH HOH . F 5 HOH A 5 567 12 HOH HOH . F 5 HOH A 6 568 14 HOH HOH . F 5 HOH A 7 569 22 HOH HOH . F 5 HOH A 8 570 25 HOH HOH . F 5 HOH A 9 571 28 HOH HOH . F 5 HOH A 10 572 30 HOH HOH . F 5 HOH A 11 573 31 HOH HOH . F 5 HOH A 12 574 32 HOH HOH . F 5 HOH A 13 575 36 HOH HOH . F 5 HOH A 14 576 40 HOH HOH . F 5 HOH A 15 577 44 HOH HOH . F 5 HOH A 16 578 45 HOH HOH . F 5 HOH A 17 579 46 HOH HOH . F 5 HOH A 18 580 48 HOH HOH . F 5 HOH A 19 581 59 HOH HOH . F 5 HOH A 20 582 62 HOH HOH . F 5 HOH A 21 583 65 HOH HOH . F 5 HOH A 22 584 69 HOH HOH . F 5 HOH A 23 585 74 HOH HOH . F 5 HOH A 24 586 76 HOH HOH . F 5 HOH A 25 587 79 HOH HOH . F 5 HOH A 26 588 80 HOH HOH . F 5 HOH A 27 589 82 HOH HOH . F 5 HOH A 28 590 85 HOH HOH . F 5 HOH A 29 591 88 HOH HOH . F 5 HOH A 30 592 90 HOH HOH . F 5 HOH A 31 593 95 HOH HOH . F 5 HOH A 32 594 98 HOH HOH . F 5 HOH A 33 595 100 HOH HOH . F 5 HOH A 34 596 101 HOH HOH . F 5 HOH A 35 597 103 HOH HOH . F 5 HOH A 36 598 105 HOH HOH . F 5 HOH A 37 599 112 HOH HOH . F 5 HOH A 38 600 113 HOH HOH . F 5 HOH A 39 603 114 HOH HOH . F 5 HOH A 40 604 126 HOH HOH . F 5 HOH A 41 605 127 HOH HOH . F 5 HOH A 42 606 128 HOH HOH . F 5 HOH A 43 607 129 HOH HOH . F 5 HOH A 44 608 139 HOH HOH . F 5 HOH A 45 609 140 HOH HOH . F 5 HOH A 46 610 146 HOH HOH . G 5 HOH B 1 441 4 HOH HOH . G 5 HOH B 2 442 6 HOH HOH . G 5 HOH B 3 443 8 HOH HOH . G 5 HOH B 4 444 9 HOH HOH . G 5 HOH B 5 445 10 HOH HOH . G 5 HOH B 6 446 11 HOH HOH . G 5 HOH B 7 447 15 HOH HOH . G 5 HOH B 8 448 16 HOH HOH . G 5 HOH B 9 449 19 HOH HOH . G 5 HOH B 10 450 26 HOH HOH . G 5 HOH B 11 451 27 HOH HOH . G 5 HOH B 12 452 29 HOH HOH . G 5 HOH B 13 453 34 HOH HOH . G 5 HOH B 14 454 37 HOH HOH . G 5 HOH B 15 455 38 HOH HOH . G 5 HOH B 16 456 39 HOH HOH . G 5 HOH B 17 457 41 HOH HOH . G 5 HOH B 18 458 49 HOH HOH . G 5 HOH B 19 459 56 HOH HOH . G 5 HOH B 20 460 67 HOH HOH . G 5 HOH B 21 461 70 HOH HOH . G 5 HOH B 22 462 71 HOH HOH . G 5 HOH B 23 463 77 HOH HOH . G 5 HOH B 24 464 81 HOH HOH . G 5 HOH B 25 465 83 HOH HOH . G 5 HOH B 26 466 87 HOH HOH . G 5 HOH B 27 467 89 HOH HOH . G 5 HOH B 28 468 91 HOH HOH . G 5 HOH B 29 469 94 HOH HOH . G 5 HOH B 30 470 104 HOH HOH . G 5 HOH B 31 471 106 HOH HOH . G 5 HOH B 32 472 107 HOH HOH . G 5 HOH B 33 473 110 HOH HOH . G 5 HOH B 34 474 111 HOH HOH . G 5 HOH B 35 475 115 HOH HOH . G 5 HOH B 36 476 117 HOH HOH . G 5 HOH B 37 477 119 HOH HOH . G 5 HOH B 38 478 122 HOH HOH . G 5 HOH B 39 479 123 HOH HOH . G 5 HOH B 40 480 136 HOH HOH . G 5 HOH B 41 481 141 HOH HOH . G 5 HOH B 42 482 142 HOH HOH . G 5 HOH B 43 483 144 HOH HOH . G 5 HOH B 44 484 145 HOH HOH . G 5 HOH B 45 485 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JGZ . . . E 4 47.927 61.814 15.996 1 65.02 ? C1 JGZ 562 A 1 HETATM 2 C C2 JGZ . . . E 4 47.323 60.986 15.076 1 65.05 ? C2 JGZ 562 A 1 HETATM 3 C C3 JGZ . . . E 4 47.998 60.809 13.852 1 66.7 ? C3 JGZ 562 A 1 HETATM 4 N N4 JGZ . . . E 4 49.187 61.422 13.588 1 67.85 ? N4 JGZ 562 A 1 HETATM 5 C C5 JGZ . . . E 4 49.761 62.232 14.494 1 67.06 ? C5 JGZ 562 A 1 HETATM 6 N N6 JGZ . . . E 4 49.122 62.386 15.653 1 67.36 ? N6 JGZ 562 A 1 HETATM 7 O O7 JGZ . . . E 4 47.349 62.055 17.196 1 63.51 ? O7 JGZ 562 A 1 HETATM 8 C C8 JGZ . . . E 4 48.052 62.892 18.091 1 63.06 ? C8 JGZ 562 A 1 HETATM 9 N N9 JGZ . . . E 4 50.969 62.881 14.265 1 65.08 ? N9 JGZ 562 A 1 HETATM 10 C C10 JGZ . . . E 4 51.452 63.823 15.225 1 68.91 ? C10 JGZ 562 A 1 HETATM 11 C C11 JGZ . . . E 4 52.966 63.834 15.25 1 71.44 ? C11 JGZ 562 A 1 HETATM 12 C C12 JGZ . . . E 4 53.527 65.141 15.849 1 73.92 ? C12 JGZ 562 A 1 HETATM 13 N N13 JGZ . . . E 4 53.025 66.32 15.123 1 77.41 ? N13 JGZ 562 A 1 HETATM 14 C C14 JGZ . . . E 4 51.583 66.338 15.269 1 75.51 ? C14 JGZ 562 A 1 HETATM 15 C C15 JGZ . . . E 4 50.956 65.108 14.612 1 73.52 ? C15 JGZ 562 A 1 HETATM 16 C C16 JGZ . . . E 4 53.541 67.603 15.452 1 83.2 ? C16 JGZ 562 A 1 HETATM 17 C C17 JGZ . . . E 4 53.376 68.647 14.532 1 86.13 ? C17 JGZ 562 A 1 HETATM 18 C C18 JGZ . . . E 4 53.872 69.921 14.795 1 88.67 ? C18 JGZ 562 A 1 HETATM 19 C C19 JGZ . . . E 4 54.537 70.185 16.013 1 91.1 ? C19 JGZ 562 A 1 HETATM 20 C C20 JGZ . . . E 4 54.702 69.163 16.952 1 87.99 ? C20 JGZ 562 A 1 HETATM 21 C C21 JGZ . . . E 4 54.21 67.891 16.664 1 85.74 ? C21 JGZ 562 A 1 HETATM 22 C C22 JGZ . . . E 4 48.163 64.273 17.834 1 62.79 ? C22 JGZ 562 A 1 HETATM 23 C C23 JGZ . . . E 4 48.881 65.068 18.675 1 62.41 ? C23 JGZ 562 A 1 HETATM 24 C C24 JGZ . . . E 4 49.49 64.563 19.824 1 61.99 ? C24 JGZ 562 A 1 HETATM 25 C C25 JGZ . . . E 4 49.382 63.214 20.129 1 61.04 ? C25 JGZ 562 A 1 HETATM 26 C C26 JGZ . . . E 4 48.681 62.383 19.266 1 61.89 ? C26 JGZ 562 A 1 HETATM 27 C C27 JGZ . . . E 4 48.597 60.913 19.604 1 60.91 ? C27 JGZ 562 A 1 HETATM 28 C C28 JGZ . . . E 4 47.504 64.917 16.627 1 63.59 ? C28 JGZ 562 A 1 HETATM 29 C C29 JGZ . . . E 4 50.224 65.467 20.655 1 62.33 ? C29 JGZ 562 A 1 HETATM 30 N N30 JGZ . . . E 4 50.806 66.184 21.312 1 62.32 ? N30 JGZ 562 A 1 HETATM 31 S S31 JGZ . . . E 4 55.125 71.822 16.347 1 94.47 ? S31 JGZ 562 A 1 HETATM 32 N N32 JGZ . . . E 4 54.078 72.854 15.575 1 93.95 ? N32 JGZ 562 A 1 HETATM 33 O O33 JGZ . . . E 4 55.021 71.97 17.741 1 93.08 ? O33 JGZ 562 A 1 HETATM 34 O O34 JGZ . . . E 4 56.347 71.979 15.655 1 94.54 ? O34 JGZ 562 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 1050 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 34 #