data_3NBP
#
_model_server_result.job_id            PW4-zN65ouxBXRMJuxk_2A 
_model_server_result.datetime_utc      '2024-11-05 23:03:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    3NBP 
#
_exptl.entry_id    3NBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NBP 
_cell.length_a            118.686 
_cell.length_b            152.869 
_cell.length_c            154.464 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc2 A OE1 GLU 478 A GLU 478 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc3 A OE2 GLU 478 A GLU 478 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NBP 
_atom_sites.fract_transf_matrix[1][1]    0.008426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 601 601 MN MN . 
D 3 MN A 1 602 602 MN MN . 
E 4 JGZ A 1 562 1 JGZ JGZ . 
F 5 HOH A 1 563 2 HOH HOH . 
F 5 HOH A 2 564 3 HOH HOH . 
F 5 HOH A 3 565 5 HOH HOH . 
F 5 HOH A 4 566 7 HOH HOH . 
F 5 HOH A 5 567 12 HOH HOH . 
F 5 HOH A 6 568 14 HOH HOH . 
F 5 HOH A 7 569 22 HOH HOH . 
F 5 HOH A 8 570 25 HOH HOH . 
F 5 HOH A 9 571 28 HOH HOH . 
F 5 HOH A 10 572 30 HOH HOH . 
F 5 HOH A 11 573 31 HOH HOH . 
F 5 HOH A 12 574 32 HOH HOH . 
F 5 HOH A 13 575 36 HOH HOH . 
F 5 HOH A 14 576 40 HOH HOH . 
F 5 HOH A 15 577 44 HOH HOH . 
F 5 HOH A 16 578 45 HOH HOH . 
F 5 HOH A 17 579 46 HOH HOH . 
F 5 HOH A 18 580 48 HOH HOH . 
F 5 HOH A 19 581 59 HOH HOH . 
F 5 HOH A 20 582 62 HOH HOH . 
F 5 HOH A 21 583 65 HOH HOH . 
F 5 HOH A 22 584 69 HOH HOH . 
F 5 HOH A 23 585 74 HOH HOH . 
F 5 HOH A 24 586 76 HOH HOH . 
F 5 HOH A 25 587 79 HOH HOH . 
F 5 HOH A 26 588 80 HOH HOH . 
F 5 HOH A 27 589 82 HOH HOH . 
F 5 HOH A 28 590 85 HOH HOH . 
F 5 HOH A 29 591 88 HOH HOH . 
F 5 HOH A 30 592 90 HOH HOH . 
F 5 HOH A 31 593 95 HOH HOH . 
F 5 HOH A 32 594 98 HOH HOH . 
F 5 HOH A 33 595 100 HOH HOH . 
F 5 HOH A 34 596 101 HOH HOH . 
F 5 HOH A 35 597 103 HOH HOH . 
F 5 HOH A 36 598 105 HOH HOH . 
F 5 HOH A 37 599 112 HOH HOH . 
F 5 HOH A 38 600 113 HOH HOH . 
F 5 HOH A 39 603 114 HOH HOH . 
F 5 HOH A 40 604 126 HOH HOH . 
F 5 HOH A 41 605 127 HOH HOH . 
F 5 HOH A 42 606 128 HOH HOH . 
F 5 HOH A 43 607 129 HOH HOH . 
F 5 HOH A 44 608 139 HOH HOH . 
F 5 HOH A 45 609 140 HOH HOH . 
F 5 HOH A 46 610 146 HOH HOH . 
G 5 HOH B 1 441 4 HOH HOH . 
G 5 HOH B 2 442 6 HOH HOH . 
G 5 HOH B 3 443 8 HOH HOH . 
G 5 HOH B 4 444 9 HOH HOH . 
G 5 HOH B 5 445 10 HOH HOH . 
G 5 HOH B 6 446 11 HOH HOH . 
G 5 HOH B 7 447 15 HOH HOH . 
G 5 HOH B 8 448 16 HOH HOH . 
G 5 HOH B 9 449 19 HOH HOH . 
G 5 HOH B 10 450 26 HOH HOH . 
G 5 HOH B 11 451 27 HOH HOH . 
G 5 HOH B 12 452 29 HOH HOH . 
G 5 HOH B 13 453 34 HOH HOH . 
G 5 HOH B 14 454 37 HOH HOH . 
G 5 HOH B 15 455 38 HOH HOH . 
G 5 HOH B 16 456 39 HOH HOH . 
G 5 HOH B 17 457 41 HOH HOH . 
G 5 HOH B 18 458 49 HOH HOH . 
G 5 HOH B 19 459 56 HOH HOH . 
G 5 HOH B 20 460 67 HOH HOH . 
G 5 HOH B 21 461 70 HOH HOH . 
G 5 HOH B 22 462 71 HOH HOH . 
G 5 HOH B 23 463 77 HOH HOH . 
G 5 HOH B 24 464 81 HOH HOH . 
G 5 HOH B 25 465 83 HOH HOH . 
G 5 HOH B 26 466 87 HOH HOH . 
G 5 HOH B 27 467 89 HOH HOH . 
G 5 HOH B 28 468 91 HOH HOH . 
G 5 HOH B 29 469 94 HOH HOH . 
G 5 HOH B 30 470 104 HOH HOH . 
G 5 HOH B 31 471 106 HOH HOH . 
G 5 HOH B 32 472 107 HOH HOH . 
G 5 HOH B 33 473 110 HOH HOH . 
G 5 HOH B 34 474 111 HOH HOH . 
G 5 HOH B 35 475 115 HOH HOH . 
G 5 HOH B 36 476 117 HOH HOH . 
G 5 HOH B 37 477 119 HOH HOH . 
G 5 HOH B 38 478 122 HOH HOH . 
G 5 HOH B 39 479 123 HOH HOH . 
G 5 HOH B 40 480 136 HOH HOH . 
G 5 HOH B 41 481 141 HOH HOH . 
G 5 HOH B 42 482 142 HOH HOH . 
G 5 HOH B 43 483 144 HOH HOH . 
G 5 HOH B 44 484 145 HOH HOH . 
G 5 HOH B 45 485 147 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               65.375 
_atom_site.Cartn_y               4.79 
_atom_site.Cartn_z               34.416 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        157.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#