data_3NBR # _model_server_result.job_id SdmJTphxXc8USoxvasqmNg _model_server_result.datetime_utc '2024-12-21 18:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":129}' # _entry.id 3NBR # _exptl.entry_id 3NBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-ANDROSTENE-3-17-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NBR _cell.length_a 60.168 _cell.length_b 60.168 _cell.length_c 142.585 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 104.214033 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id ASD _chem_comp.mon_nstd_flag . _chem_comp.name 4-ANDROSTENE-3-17-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C10 ASD sing 39 n n C1 C2 ASD sing 40 n n C1 H11 ASD sing 41 n n C1 H12 ASD sing 42 n n C10 C19 ASD sing 43 n n C10 C5 ASD sing 44 n n C10 C9 ASD sing 45 n n C11 C12 ASD sing 46 n n C11 C9 ASD sing 47 n n C11 H111 ASD sing 48 n n C11 H112 ASD sing 49 n n C12 C13 ASD sing 50 n n C12 H121 ASD sing 51 n n C12 H122 ASD sing 52 n n C13 C14 ASD sing 53 n n C13 C17 ASD sing 54 n n C13 C18 ASD sing 55 n n C14 C15 ASD sing 56 n n C14 C8 ASD sing 57 n n C14 H14 ASD sing 58 n n C15 C16 ASD sing 59 n n C15 H151 ASD sing 60 n n C15 H152 ASD sing 61 n n C16 C17 ASD sing 62 n n C16 H161 ASD sing 63 n n C16 H162 ASD sing 64 n n C17 O2 ASD doub 65 n n C18 H181 ASD sing 66 n n C18 H182 ASD sing 67 n n C18 H183 ASD sing 68 n n C19 H191 ASD sing 69 n n C19 H192 ASD sing 70 n n C19 H193 ASD sing 71 n n C2 C3 ASD sing 72 n n C2 H21 ASD sing 73 n n C2 H22 ASD sing 74 n n C3 C4 ASD sing 75 n n C3 O1 ASD doub 76 n n C4 C5 ASD doub 77 n n C4 H4 ASD sing 78 n n C5 C6 ASD sing 79 n n C6 C7 ASD sing 80 n n C6 H61 ASD sing 81 n n C6 H62 ASD sing 82 n n C7 C8 ASD sing 83 n n C7 H71 ASD sing 84 n n C7 H72 ASD sing 85 n n C8 C9 ASD sing 86 n n C8 H8 ASD sing 87 n n C9 H9 ASD sing 88 n n # _atom_sites.entry_id 3NBR _atom_sites.fract_transf_matrix[1][1] 0.01662 _atom_sites.fract_transf_matrix[1][2] 0.009596 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 126 1 SO4 SO4 . C 2 SO4 A 1 127 2 SO4 SO4 . D 2 SO4 A 1 128 3 SO4 SO4 . E 3 ASD A 1 129 1 ASD ASD . F 4 HOH A 1 130 3 HOH HOH . F 4 HOH A 2 131 5 HOH HOH . F 4 HOH A 3 132 8 HOH HOH . F 4 HOH A 4 133 9 HOH HOH . F 4 HOH A 5 134 10 HOH HOH . F 4 HOH A 6 135 14 HOH HOH . F 4 HOH A 7 136 15 HOH HOH . F 4 HOH A 8 137 16 HOH HOH . F 4 HOH A 9 138 18 HOH HOH . F 4 HOH A 10 139 19 HOH HOH . F 4 HOH A 11 140 23 HOH HOH . F 4 HOH A 12 141 24 HOH HOH . F 4 HOH A 13 142 25 HOH HOH . F 4 HOH A 14 143 27 HOH HOH . F 4 HOH A 15 144 30 HOH HOH . F 4 HOH A 16 145 31 HOH HOH . F 4 HOH A 17 146 32 HOH HOH . F 4 HOH A 18 147 37 HOH HOH . F 4 HOH A 19 148 39 HOH HOH . F 4 HOH A 20 149 41 HOH HOH . F 4 HOH A 21 150 43 HOH HOH . F 4 HOH A 22 151 45 HOH HOH . F 4 HOH A 23 152 46 HOH HOH . F 4 HOH A 24 153 48 HOH HOH . F 4 HOH A 25 154 50 HOH HOH . F 4 HOH A 26 155 51 HOH HOH . F 4 HOH A 27 156 52 HOH HOH . F 4 HOH A 28 157 53 HOH HOH . F 4 HOH A 29 158 54 HOH HOH . F 4 HOH A 30 159 55 HOH HOH . F 4 HOH A 31 160 56 HOH HOH . F 4 HOH A 32 161 57 HOH HOH . F 4 HOH A 33 162 58 HOH HOH . F 4 HOH A 34 163 59 HOH HOH . F 4 HOH A 35 164 60 HOH HOH . F 4 HOH A 36 165 61 HOH HOH . F 4 HOH A 37 166 62 HOH HOH . F 4 HOH A 38 167 63 HOH HOH . F 4 HOH A 39 168 64 HOH HOH . F 4 HOH A 40 169 65 HOH HOH . F 4 HOH A 41 170 67 HOH HOH . F 4 HOH A 42 171 68 HOH HOH . F 4 HOH A 43 172 69 HOH HOH . F 4 HOH A 44 173 70 HOH HOH . F 4 HOH A 45 174 71 HOH HOH . F 4 HOH A 46 175 72 HOH HOH . F 4 HOH A 47 176 73 HOH HOH . F 4 HOH A 48 177 74 HOH HOH . F 4 HOH A 49 178 75 HOH HOH . F 4 HOH A 50 179 76 HOH HOH . F 4 HOH A 51 180 77 HOH HOH . F 4 HOH A 52 181 78 HOH HOH . F 4 HOH A 53 182 79 HOH HOH . F 4 HOH A 54 183 80 HOH HOH . F 4 HOH A 55 184 81 HOH HOH . F 4 HOH A 56 185 82 HOH HOH . F 4 HOH A 57 186 83 HOH HOH . F 4 HOH A 58 187 84 HOH HOH . F 4 HOH A 59 188 85 HOH HOH . F 4 HOH A 60 189 86 HOH HOH . F 4 HOH A 61 190 87 HOH HOH . F 4 HOH A 62 191 88 HOH HOH . F 4 HOH A 63 192 89 HOH HOH . F 4 HOH A 64 193 90 HOH HOH . F 4 HOH A 65 194 91 HOH HOH . F 4 HOH A 66 195 92 HOH HOH . F 4 HOH A 67 196 93 HOH HOH . F 4 HOH A 68 197 94 HOH HOH . F 4 HOH A 69 198 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASD . A . E 3 3.025 49.689 14.758 0.5 41.91 ? C1 ASD 129 A 1 HETATM 2 C C1 ASD . B . E 3 4.65 50.523 15.528 0.5 55.15 ? C1 ASD 129 A 1 HETATM 3 C C10 ASD . A . E 3 3.549 51.098 14.818 0.5 45.56 ? C10 ASD 129 A 1 HETATM 4 C C10 ASD . B . E 3 4.618 52.043 15.32 0.5 55.27 ? C10 ASD 129 A 1 HETATM 5 C C11 ASD . A . E 3 3.006 51.642 17.321 0.5 46.39 ? C11 ASD 129 A 1 HETATM 6 C C11 ASD . B . E 3 4.811 53.3 17.603 0.5 56.15 ? C11 ASD 129 A 1 HETATM 7 C C12 ASD . A . E 3 2.333 52.593 18.339 0.5 46.63 ? C12 ASD 129 A 1 HETATM 8 C C12 ASD . B . E 3 4.639 54.721 18.322 0.5 56.51 ? C12 ASD 129 A 1 HETATM 9 C C13 ASD . A . E 3 2.756 54.011 18 0.5 48.59 ? C13 ASD 129 A 1 HETATM 10 C C13 ASD . B . E 3 3.869 55.869 17.572 0.5 57.27 ? C13 ASD 129 A 1 HETATM 11 C C14 ASD . A . E 3 2.276 54.347 16.586 0.5 49.51 ? C14 ASD 129 A 1 HETATM 12 C C14 ASD . B . E 3 2.766 55.26 16.706 0.5 56.63 ? C14 ASD 129 A 1 HETATM 13 C C15 ASD . A . E 3 2.477 55.89 16.502 0.5 50.07 ? C15 ASD 129 A 1 HETATM 14 C C15 ASD . B . E 3 2.146 56.554 16.094 0.5 56.57 ? C15 ASD 129 A 1 HETATM 15 C C16 ASD . A . E 3 1.82 56.375 17.812 0.5 46.62 ? C16 ASD 129 A 1 HETATM 16 C C16 ASD . B . E 3 1.915 57.425 17.331 0.5 54.24 ? C16 ASD 129 A 1 HETATM 17 C C17 ASD . A . E 3 2.078 55.16 18.78 0.5 49.53 ? C17 ASD 129 A 1 HETATM 18 C C17 ASD . B . E 3 2.853 56.747 18.357 0.5 57.18 ? C17 ASD 129 A 1 HETATM 19 C C18 ASD . A . E 3 4.283 54.161 18.159 0.5 50.71 ? C18 ASD 129 A 1 HETATM 20 C C18 ASD . B . E 3 4.822 56.829 16.799 0.5 56.05 ? C18 ASD 129 A 1 HETATM 21 C C19 ASD . A . E 3 5.039 51.145 15.23 0.5 45.25 ? C19 ASD 129 A 1 HETATM 22 C C19 ASD . B . E 3 6.054 52.537 15.339 0.5 53.37 ? C19 ASD 129 A 1 HETATM 23 C C2 ASD . A . E 3 4.099 48.857 14.051 0.5 40.47 ? C2 ASD 129 A 1 HETATM 24 C C2 ASD . B . E 3 5.639 49.911 14.487 0.5 52.1 ? C2 ASD 129 A 1 HETATM 25 C C3 ASD . A . E 3 4.284 49.315 12.586 0.5 40.2 ? C3 ASD 129 A 1 HETATM 26 C C3 ASD . B . E 3 5.125 50.153 13.047 0.5 54.29 ? C3 ASD 129 A 1 HETATM 27 C C4 ASD . A . E 3 4.085 50.697 12.292 0.5 41.35 ? C4 ASD 129 A 1 HETATM 28 C C4 ASD . B . E 3 4.364 51.309 12.802 0.5 54.22 ? C4 ASD 129 A 1 HETATM 29 C C5 ASD . A . E 3 3.663 51.576 13.324 0.5 46.45 ? C5 ASD 129 A 1 HETATM 30 C C5 ASD . B . E 3 4.085 52.228 13.839 0.5 55.75 ? C5 ASD 129 A 1 HETATM 31 C C6 ASD . A . E 3 3.451 53.061 13.042 0.5 46.05 ? C6 ASD 129 A 1 HETATM 32 C C6 ASD . B . E 3 3.182 53.397 13.469 0.5 56.15 ? C6 ASD 129 A 1 HETATM 33 C C7 ASD . A . E 3 2.506 53.704 14.085 0.5 49.65 ? C7 ASD 129 A 1 HETATM 34 C C7 ASD . B . E 3 2.304 53.759 14.67 0.5 56.15 ? C7 ASD 129 A 1 HETATM 35 C C8 ASD . A . E 3 2.976 53.462 15.524 0.5 48.25 ? C8 ASD 129 A 1 HETATM 36 C C8 ASD . B . E 3 3.308 54.186 15.729 0.5 56.1 ? C8 ASD 129 A 1 HETATM 37 C C9 ASD . A . E 3 2.738 51.987 15.826 0.5 47.58 ? C9 ASD 129 A 1 HETATM 38 C C9 ASD . B . E 3 3.875 52.911 16.405 0.5 55.23 ? C9 ASD 129 A 1 HETATM 39 O O1 ASD . A . E 3 4.681 48.474 11.751 0.5 27.96 ? O1 ASD 129 A 1 HETATM 40 O O1 ASD . B . E 3 5.387 49.353 12.127 0.5 51.63 ? O1 ASD 129 A 1 HETATM 41 O O2 ASD . A . E 3 1.849 55.131 19.992 0.5 48.73 ? O2 ASD 129 A 1 HETATM 42 O O2 ASD . B . E 3 2.701 56.81 19.582 0.5 58.7 ? O2 ASD 129 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #