data_3NBW # _model_server_result.job_id h8ftIGU7CSzR-GVPLYUIEA _model_server_result.datetime_utc '2024-11-24 20:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3NBW # _exptl.entry_id 3NBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.289 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-amino-3-(methylsulfanyl)-1-phenyl-1H-pyrazole-4-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NBW _cell.length_a 82.701 _cell.length_b 85.63 _cell.length_c 136.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C11 H10 N4 S' _chem_comp.formula_weight 230.289 _chem_comp.id TR4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-amino-3-(methylsulfanyl)-1-phenyl-1H-pyrazole-4-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 S02 TR4 sing 323 n n S02 C03 TR4 sing 324 n n C03 N04 TR4 doub 325 n y C03 C08 TR4 sing 326 n y N04 N05 TR4 sing 327 n y N05 C06 TR4 sing 328 n y N05 C11 TR4 sing 329 n y C06 N07 TR4 sing 330 n n C06 C08 TR4 doub 331 n y C08 C09 TR4 sing 332 n n C09 N10 TR4 trip 333 n n C11 C12 TR4 doub 334 n y C11 C16 TR4 sing 335 n y C12 C13 TR4 sing 336 n y C13 C14 TR4 doub 337 n y C14 C15 TR4 sing 338 n y C15 C16 TR4 doub 339 n y C01 H01 TR4 sing 340 n n C01 H01A TR4 sing 341 n n C01 H01B TR4 sing 342 n n N07 HN07 TR4 sing 343 n n N07 HN0A TR4 sing 344 n n C12 H12 TR4 sing 345 n n C13 H13 TR4 sing 346 n n C14 H14 TR4 sing 347 n n C15 H15 TR4 sing 348 n n C16 H16 TR4 sing 349 n n # _atom_sites.entry_id 3NBW _atom_sites.fract_transf_matrix[1][1] 0.012092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 299 1 GOL GOL . D 3 SO4 A 1 300 1 SO4 SO4 . E 4 TR4 A 1 301 1 TR4 TR4 . F 3 SO4 B 1 299 2 SO4 SO4 . G 3 SO4 B 1 300 3 SO4 SO4 . H 4 TR4 B 1 301 2 TR4 TR4 . I 5 HOH A 1 302 2 HOH HOH . I 5 HOH A 2 303 6 HOH HOH . I 5 HOH A 3 304 13 HOH HOH . I 5 HOH A 4 305 17 HOH HOH . I 5 HOH A 5 306 18 HOH HOH . I 5 HOH A 6 307 19 HOH HOH . I 5 HOH A 7 308 21 HOH HOH . I 5 HOH A 8 309 22 HOH HOH . I 5 HOH A 9 310 23 HOH HOH . I 5 HOH A 10 311 26 HOH HOH . I 5 HOH A 11 312 28 HOH HOH . I 5 HOH A 12 313 30 HOH HOH . I 5 HOH A 13 314 37 HOH HOH . I 5 HOH A 14 315 39 HOH HOH . I 5 HOH A 15 316 43 HOH HOH . I 5 HOH A 16 317 44 HOH HOH . I 5 HOH A 17 318 55 HOH HOH . I 5 HOH A 18 319 57 HOH HOH . I 5 HOH A 19 320 63 HOH HOH . I 5 HOH A 20 321 65 HOH HOH . I 5 HOH A 21 322 68 HOH HOH . I 5 HOH A 22 323 74 HOH HOH . I 5 HOH A 23 324 75 HOH HOH . I 5 HOH A 24 325 77 HOH HOH . I 5 HOH A 25 326 83 HOH HOH . I 5 HOH A 26 327 84 HOH HOH . I 5 HOH A 27 328 87 HOH HOH . I 5 HOH A 28 329 88 HOH HOH . I 5 HOH A 29 330 90 HOH HOH . I 5 HOH A 30 331 92 HOH HOH . I 5 HOH A 31 332 93 HOH HOH . I 5 HOH A 32 333 103 HOH HOH . I 5 HOH A 33 334 113 HOH HOH . I 5 HOH A 34 335 115 HOH HOH . I 5 HOH A 35 336 117 HOH HOH . I 5 HOH A 36 337 118 HOH HOH . I 5 HOH A 37 338 120 HOH HOH . I 5 HOH A 38 339 52 HOH HOH . J 5 HOH B 1 302 1 HOH HOH . J 5 HOH B 2 303 3 HOH HOH . J 5 HOH B 3 304 4 HOH HOH . J 5 HOH B 4 305 5 HOH HOH . J 5 HOH B 5 306 7 HOH HOH . J 5 HOH B 6 307 8 HOH HOH . J 5 HOH B 7 308 9 HOH HOH . J 5 HOH B 8 309 10 HOH HOH . J 5 HOH B 9 310 11 HOH HOH . J 5 HOH B 10 311 12 HOH HOH . J 5 HOH B 11 312 14 HOH HOH . J 5 HOH B 12 313 15 HOH HOH . J 5 HOH B 13 314 16 HOH HOH . J 5 HOH B 14 315 20 HOH HOH . J 5 HOH B 15 316 24 HOH HOH . J 5 HOH B 16 317 25 HOH HOH . J 5 HOH B 17 318 27 HOH HOH . J 5 HOH B 18 319 29 HOH HOH . J 5 HOH B 19 320 31 HOH HOH . J 5 HOH B 20 321 32 HOH HOH . J 5 HOH B 21 322 33 HOH HOH . J 5 HOH B 22 323 34 HOH HOH . J 5 HOH B 23 324 35 HOH HOH . J 5 HOH B 24 325 36 HOH HOH . J 5 HOH B 25 326 38 HOH HOH . J 5 HOH B 26 327 40 HOH HOH . J 5 HOH B 27 328 41 HOH HOH . J 5 HOH B 28 329 42 HOH HOH . J 5 HOH B 29 330 45 HOH HOH . J 5 HOH B 30 331 46 HOH HOH . J 5 HOH B 31 332 47 HOH HOH . J 5 HOH B 32 333 48 HOH HOH . J 5 HOH B 33 334 49 HOH HOH . J 5 HOH B 34 335 50 HOH HOH . J 5 HOH B 35 336 51 HOH HOH . J 5 HOH B 36 338 53 HOH HOH . J 5 HOH B 37 339 54 HOH HOH . J 5 HOH B 38 340 56 HOH HOH . J 5 HOH B 39 341 58 HOH HOH . J 5 HOH B 40 342 59 HOH HOH . J 5 HOH B 41 343 60 HOH HOH . J 5 HOH B 42 344 61 HOH HOH . J 5 HOH B 43 345 62 HOH HOH . J 5 HOH B 44 346 64 HOH HOH . J 5 HOH B 45 347 66 HOH HOH . J 5 HOH B 46 348 67 HOH HOH . J 5 HOH B 47 349 69 HOH HOH . J 5 HOH B 48 350 70 HOH HOH . J 5 HOH B 49 351 71 HOH HOH . J 5 HOH B 50 352 72 HOH HOH . J 5 HOH B 51 353 73 HOH HOH . J 5 HOH B 52 354 76 HOH HOH . J 5 HOH B 53 355 78 HOH HOH . J 5 HOH B 54 356 79 HOH HOH . J 5 HOH B 55 357 80 HOH HOH . J 5 HOH B 56 358 81 HOH HOH . J 5 HOH B 57 359 82 HOH HOH . J 5 HOH B 58 360 85 HOH HOH . J 5 HOH B 59 361 86 HOH HOH . J 5 HOH B 60 362 89 HOH HOH . J 5 HOH B 61 363 91 HOH HOH . J 5 HOH B 62 364 94 HOH HOH . J 5 HOH B 63 365 95 HOH HOH . J 5 HOH B 64 366 96 HOH HOH . J 5 HOH B 65 367 97 HOH HOH . J 5 HOH B 66 368 98 HOH HOH . J 5 HOH B 67 369 99 HOH HOH . J 5 HOH B 68 370 100 HOH HOH . J 5 HOH B 69 371 101 HOH HOH . J 5 HOH B 70 372 102 HOH HOH . J 5 HOH B 71 373 104 HOH HOH . J 5 HOH B 72 374 105 HOH HOH . J 5 HOH B 73 375 106 HOH HOH . J 5 HOH B 74 376 107 HOH HOH . J 5 HOH B 75 377 108 HOH HOH . J 5 HOH B 76 378 109 HOH HOH . J 5 HOH B 77 379 110 HOH HOH . J 5 HOH B 78 380 111 HOH HOH . J 5 HOH B 79 381 112 HOH HOH . J 5 HOH B 80 382 114 HOH HOH . J 5 HOH B 81 383 116 HOH HOH . J 5 HOH B 82 384 119 HOH HOH . J 5 HOH B 83 385 121 HOH HOH . J 5 HOH B 84 386 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 TR4 . . . E 4 -2.179 -1.383 14.126 1 53.09 ? C01 TR4 301 A 1 HETATM 2 S S02 TR4 . . . E 4 -1.41 -0.343 15.344 1 58.4 ? S02 TR4 301 A 1 HETATM 3 C C03 TR4 . . . E 4 -2.188 -0.71 16.814 1 56.34 ? C03 TR4 301 A 1 HETATM 4 N N04 TR4 . . . E 4 -2.237 -1.917 17.412 1 57.83 ? N04 TR4 301 A 1 HETATM 5 N N05 TR4 . . . E 4 -2.976 -1.788 18.516 1 57.46 ? N05 TR4 301 A 1 HETATM 6 C C06 TR4 . . . E 4 -3.484 -0.481 18.71 1 58.33 ? C06 TR4 301 A 1 HETATM 7 N N07 TR4 . . . E 4 -4.28 -0.043 19.729 1 52.98 ? N07 TR4 301 A 1 HETATM 8 C C08 TR4 . . . E 4 -2.956 0.23 17.599 1 56.06 ? C08 TR4 301 A 1 HETATM 9 C C09 TR4 . . . E 4 -3.152 1.571 17.313 1 54.92 ? C09 TR4 301 A 1 HETATM 10 N N10 TR4 . . . E 4 -3.307 2.686 17.046 1 54.18 ? N10 TR4 301 A 1 HETATM 11 C C11 TR4 . . . E 4 -3.3 -2.861 19.359 1 58.27 ? C11 TR4 301 A 1 HETATM 12 C C12 TR4 . . . E 4 -3.368 -2.623 20.735 1 57.03 ? C12 TR4 301 A 1 HETATM 13 C C13 TR4 . . . E 4 -3.718 -3.699 21.534 1 52.51 ? C13 TR4 301 A 1 HETATM 14 C C14 TR4 . . . E 4 -3.988 -4.951 20.971 1 53.58 ? C14 TR4 301 A 1 HETATM 15 C C15 TR4 . . . E 4 -3.916 -5.162 19.59 1 55.19 ? C15 TR4 301 A 1 HETATM 16 C C16 TR4 . . . E 4 -3.567 -4.098 18.771 1 56.14 ? C16 TR4 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #