data_3NBX # _model_server_result.job_id APf9jdL6HMe02QhLGjtDrw _model_server_result.datetime_utc '2025-04-28 05:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":499}' # _entry.id 3NBX # _exptl.entry_id 3NBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NBX _cell.length_a 162.232 _cell.length_b 162.232 _cell.length_c 55.316 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 334 n n S O2 SO4 doub 335 n n S O3 SO4 sing 336 n n S O4 SO4 sing 337 n n # _atom_sites.entry_id 3NBX _atom_sites.fract_transf_matrix[1][1] 0.006164 _atom_sites.fract_transf_matrix[1][2] 0.003559 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP X 1 800 800 ADP ADP . C 3 SO4 X 1 499 1 SO4 SO4 . D 4 HOH X 1 500 18 HOH HOH . D 4 HOH X 2 501 27 HOH HOH . D 4 HOH X 3 502 31 HOH HOH . D 4 HOH X 4 503 35 HOH HOH . D 4 HOH X 5 504 36 HOH HOH . D 4 HOH X 6 505 40 HOH HOH . D 4 HOH X 7 506 42 HOH HOH . D 4 HOH X 8 507 43 HOH HOH . D 4 HOH X 9 508 49 HOH HOH . D 4 HOH X 10 509 53 HOH HOH . D 4 HOH X 11 510 60 HOH HOH . D 4 HOH X 12 511 61 HOH HOH . D 4 HOH X 13 512 67 HOH HOH . D 4 HOH X 14 513 68 HOH HOH . D 4 HOH X 15 514 71 HOH HOH . D 4 HOH X 16 515 73 HOH HOH . D 4 HOH X 17 516 84 HOH HOH . D 4 HOH X 18 517 85 HOH HOH . D 4 HOH X 19 518 96 HOH HOH . D 4 HOH X 20 519 102 HOH HOH . D 4 HOH X 21 520 103 HOH HOH . D 4 HOH X 22 521 105 HOH HOH . D 4 HOH X 23 522 110 HOH HOH . D 4 HOH X 24 523 115 HOH HOH . D 4 HOH X 25 524 116 HOH HOH . D 4 HOH X 26 525 118 HOH HOH . D 4 HOH X 27 526 119 HOH HOH . D 4 HOH X 28 527 120 HOH HOH . D 4 HOH X 29 528 121 HOH HOH . D 4 HOH X 30 529 122 HOH HOH . D 4 HOH X 31 530 123 HOH HOH . D 4 HOH X 32 531 124 HOH HOH . D 4 HOH X 33 532 125 HOH HOH . D 4 HOH X 34 533 126 HOH HOH . D 4 HOH X 35 534 127 HOH HOH . D 4 HOH X 36 535 128 HOH HOH . D 4 HOH X 37 536 129 HOH HOH . D 4 HOH X 38 537 130 HOH HOH . D 4 HOH X 39 538 131 HOH HOH . D 4 HOH X 40 539 132 HOH HOH . D 4 HOH X 41 540 133 HOH HOH . D 4 HOH X 42 541 134 HOH HOH . D 4 HOH X 43 542 135 HOH HOH . D 4 HOH X 44 543 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 26.403 52.794 -7.78 1 135.22 ? S SO4 499 X 1 HETATM 2 O O1 SO4 . . . C 3 27.728 53.159 -8.279 1 113.4 ? O1 SO4 499 X 1 HETATM 3 O O2 SO4 . . . C 3 25.624 52.188 -8.855 1 109.32 ? O2 SO4 499 X 1 HETATM 4 O O3 SO4 . . . C 3 26.543 51.835 -6.685 1 117.05 ? O3 SO4 499 X 1 HETATM 5 O O4 SO4 . . . C 3 25.715 53.991 -7.302 1 113.1 ? O4 SO4 499 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #