data_3NC1 # _model_server_result.job_id Nr0a-63eKLNqxVS1rsD9IQ _model_server_result.datetime_utc '2024-11-26 23:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":181}' # _entry.id 3NC1 # _exptl.entry_id 3NC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NC1 _cell.length_a 156.802 _cell.length_b 216.158 _cell.length_c 123.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 26 C THR 24 1_555 D MG MG . C MG 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A OG1 THR 44 C THR 42 1_555 D MG MG . C MG 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 C O1G GTP . C GTP 181 1_555 D MG MG . C MG 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 C O1B GTP . C GTP 181 1_555 D MG MG . C MG 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 3NC1 _atom_sites.fract_transf_matrix[1][1] 0.006377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP C 1 181 1 GTP GTP . D 4 MG C 1 182 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 -31.744 68.896 -32.908 1 151.46 ? PG GTP 181 C 1 HETATM 2 O O1G GTP . . . C 3 -32.907 69.572 -32.224 1 149.36 ? O1G GTP 181 C 1 HETATM 3 O O2G GTP . . . C 3 -32.1 68.587 -34.34 1 151.47 ? O2G GTP 181 C 1 HETATM 4 O O3G GTP . . . C 3 -30.55 69.819 -32.9 1 152.18 ? O3G GTP 181 C 1 HETATM 5 O O3B GTP . . . C 3 -31.383 67.535 -32.118 1 104.25 ? O3B GTP 181 C 1 HETATM 6 P PB GTP . . . C 3 -31.323 67.536 -30.508 1 151.7 ? PB GTP 181 C 1 HETATM 7 O O1B GTP . . . C 3 -32.636 68.068 -29.984 1 149.55 ? O1B GTP 181 C 1 HETATM 8 O O2B GTP . . . C 3 -30.185 68.401 -30.023 1 154.54 ? O2B GTP 181 C 1 HETATM 9 O O3A GTP . . . C 3 -31.139 66.013 -30.001 1 69.53 ? O3A GTP 181 C 1 HETATM 10 P PA GTP . . . C 3 -32.12 64.802 -30.412 1 122.83 ? PA GTP 181 C 1 HETATM 11 O O1A GTP . . . C 3 -32.588 64.939 -31.839 1 122.43 ? O1A GTP 181 C 1 HETATM 12 O O2A GTP . . . C 3 -33.297 64.732 -29.47 1 124.58 ? O2A GTP 181 C 1 HETATM 13 O O5' GTP . . . C 3 -31.22 63.471 -30.283 1 89.55 ? O5' GTP 181 C 1 HETATM 14 C C5' GTP . . . C 3 -30.971 62.944 -29 1 99.87 ? C5' GTP 181 C 1 HETATM 15 C C4' GTP . . . C 3 -29.822 61.948 -28.998 1 116.96 ? C4' GTP 181 C 1 HETATM 16 O O4' GTP . . . C 3 -29.122 62.107 -27.783 1 128.44 ? O4' GTP 181 C 1 HETATM 17 C C3' GTP . . . C 3 -30.352 60.526 -29.036 1 123.1 ? C3' GTP 181 C 1 HETATM 18 O O3' GTP . . . C 3 -29.843 59.855 -30.164 1 127.39 ? O3' GTP 181 C 1 HETATM 19 C C2' GTP . . . C 3 -29.838 59.865 -27.774 1 126.98 ? C2' GTP 181 C 1 HETATM 20 O O2' GTP . . . C 3 -29.166 58.663 -28.071 1 125.61 ? O2' GTP 181 C 1 HETATM 21 C C1' GTP . . . C 3 -28.894 60.873 -27.137 1 135.24 ? C1' GTP 181 C 1 HETATM 22 N N9 GTP . . . C 3 -29.2 61.034 -25.703 1 144.28 ? N9 GTP 181 C 1 HETATM 23 C C8 GTP . . . C 3 -30.052 61.957 -25.152 1 142.58 ? C8 GTP 181 C 1 HETATM 24 N N7 GTP . . . C 3 -30.051 61.792 -23.81 1 136.95 ? N7 GTP 181 C 1 HETATM 25 C C5 GTP . . . C 3 -29.203 60.79 -23.492 1 138.25 ? C5 GTP 181 C 1 HETATM 26 C C6 GTP . . . C 3 -28.834 60.227 -22.275 1 140.56 ? C6 GTP 181 C 1 HETATM 27 O O6 GTP . . . C 3 -29.317 60.652 -21.225 1 145.37 ? O6 GTP 181 C 1 HETATM 28 N N1 GTP . . . C 3 -27.924 59.189 -22.255 1 137.81 ? N1 GTP 181 C 1 HETATM 29 C C2 GTP . . . C 3 -27.389 58.72 -23.439 1 133.88 ? C2 GTP 181 C 1 HETATM 30 N N2 GTP . . . C 3 -26.512 57.719 -23.418 1 134.24 ? N2 GTP 181 C 1 HETATM 31 N N3 GTP . . . C 3 -27.762 59.287 -24.642 1 135.36 ? N3 GTP 181 C 1 HETATM 32 C C4 GTP . . . C 3 -28.656 60.306 -24.672 1 140.95 ? C4 GTP 181 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #