data_3NC5 # _model_server_result.job_id 8K2qPrk79Zg57mDUNMbSfQ _model_server_result.datetime_utc '2024-11-05 04:36:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 3NC5 # _exptl.entry_id 3NC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NC5 _cell.length_a 63.8 _cell.length_b 105.4 _cell.length_c 143.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 199 A ASP 163 1_555 E MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc2 A OG1 THR 202 A THR 166 1_555 E MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc3 A O GLN 317 A GLN 281 1_555 F MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc4 A SG CYS 389 A CYS 353 1_555 C FE HEM . A HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 C FE HEM . A HEM 406 1_555 J O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 B SG CYS 389 B CYS 353 1_555 G FE HEM . B HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 B O VAL 390 B VAL 354 1_555 I MG MG . B MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc8 G FE HEM . B HEM 406 1_555 K O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NC5 _atom_sites.fract_transf_matrix[1][1] 0.015674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 406 1 HEM HEM . D 3 GOL A 1 407 2 GOL GOL . E 4 MG A 1 408 2 MG MG . F 4 MG A 1 409 3 MG MG . G 2 HEM B 1 406 1 HEM HEM . H 3 GOL B 1 407 1 GOL GOL . I 4 MG B 1 408 1 MG MG . J 5 HOH A 1 410 2 HOH HOH . J 5 HOH A 2 411 9 HOH HOH . J 5 HOH A 3 412 12 HOH HOH . J 5 HOH A 4 413 15 HOH HOH . J 5 HOH A 5 414 16 HOH HOH . J 5 HOH A 6 415 21 HOH HOH . J 5 HOH A 7 416 22 HOH HOH . J 5 HOH A 8 417 24 HOH HOH . J 5 HOH A 9 418 36 HOH HOH . J 5 HOH A 10 419 39 HOH HOH . J 5 HOH A 11 420 45 HOH HOH . J 5 HOH A 12 421 46 HOH HOH . J 5 HOH A 13 422 49 HOH HOH . J 5 HOH A 14 423 74 HOH HOH . J 5 HOH A 15 424 77 HOH HOH . J 5 HOH A 16 425 82 HOH HOH . J 5 HOH A 17 426 90 HOH HOH . J 5 HOH A 18 427 94 HOH HOH . K 5 HOH B 1 409 3 HOH HOH . K 5 HOH B 2 410 6 HOH HOH . K 5 HOH B 3 411 8 HOH HOH . K 5 HOH B 4 412 14 HOH HOH . K 5 HOH B 5 413 20 HOH HOH . K 5 HOH B 6 414 31 HOH HOH . K 5 HOH B 7 415 33 HOH HOH . K 5 HOH B 8 416 42 HOH HOH . K 5 HOH B 9 417 43 HOH HOH . K 5 HOH B 10 418 48 HOH HOH . K 5 HOH B 11 419 52 HOH HOH . K 5 HOH B 12 420 65 HOH HOH . K 5 HOH B 13 421 89 HOH HOH . K 5 HOH B 14 422 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.067 _atom_site.Cartn_y 0.476 _atom_site.Cartn_z 17.254 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 408 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #