data_3NC6
#
_model_server_result.job_id            LLpYT1FI63N-F3QG2COGxA 
_model_server_result.datetime_utc      '2025-06-27 02:32:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":407}' 
#
_entry.id    3NC6 
#
_exptl.entry_id    3NC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-phenyl-1H-imidazole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NC6 
_cell.length_a            64.95 
_cell.length_b            106.9 
_cell.length_c            142.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 389 A CYS 353 1_555 C FE HEM . A HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc2 B SG CYS 389 B CYS 353 1_555 F FE HEM . B HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
#
_chem_comp.formula           'C9 H8 N2' 
_chem_comp.formula_weight    144.173 
_chem_comp.id                PIW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-phenyl-1H-imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 PIW sing 342 n y 
C5 N1 PIW sing 343 n y 
N1 C6 PIW sing 344 n y 
N3 C2 PIW doub 345 n y 
C2 H2 PIW sing 346 n n 
N3 C4 PIW sing 347 n y 
C4 C5 PIW doub 348 n y 
C4 H4 PIW sing 349 n n 
C5 H5 PIW sing 350 n n 
C6 C11 PIW doub 351 n y 
C6 C7 PIW sing 352 n y 
C7 C8 PIW doub 353 n y 
C7 H7 PIW sing 354 n n 
C8 C9 PIW sing 355 n y 
C8 H8 PIW sing 356 n n 
C10 C9 PIW doub 357 n y 
C9 H9 PIW sing 358 n n 
C11 C10 PIW sing 359 n y 
C10 H10 PIW sing 360 n n 
C11 H11 PIW sing 361 n n 
#
_atom_sites.entry_id                     3NC6 
_atom_sites.fract_transf_matrix[1][1]    0.015396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 406 1 HEM HEM . 
D 3 PIW A 1 407 1 PIW PIW . 
E 4 MG A 1 408 1 MG MG . 
F 2 HEM B 1 406 1 HEM HEM . 
G 3 PIW B 1 407 2 PIW PIW . 
H 5 HOH A 1 409 1 HOH HOH . 
H 5 HOH A 2 410 2 HOH HOH . 
H 5 HOH A 3 411 3 HOH HOH . 
H 5 HOH A 4 412 5 HOH HOH . 
H 5 HOH A 5 413 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PIW . . . D 3 27.888 -17.824 -15.171 1 63.95 ? N1 PIW 407 A 1 
HETATM 2 C C2 PIW . . . D 3 28.908 -17.38 -14.415 1 64.72 ? C2 PIW 407 A 1 
HETATM 3 N N3 PIW . . . D 3 28.951 -18.222 -13.343 1 63.83 ? N3 PIW 407 A 1 
HETATM 4 C C4 PIW . . . D 3 27.969 -19.158 -13.513 1 63.79 ? C4 PIW 407 A 1 
HETATM 5 C C5 PIW . . . D 3 27.287 -18.919 -14.698 1 62.9 ? C5 PIW 407 A 1 
HETATM 6 C C6 PIW . . . D 3 27.541 -17.29 -16.365 1 63.61 ? C6 PIW 407 A 1 
HETATM 7 C C7 PIW . . . D 3 28.495 -17.105 -17.396 1 62.4 ? C7 PIW 407 A 1 
HETATM 8 C C8 PIW . . . D 3 28.175 -16.6 -18.658 1 61.19 ? C8 PIW 407 A 1 
HETATM 9 C C9 PIW . . . D 3 26.861 -16.239 -18.948 1 61.06 ? C9 PIW 407 A 1 
HETATM 10 C C10 PIW . . . D 3 25.883 -16.407 -17.967 1 62.21 ? C10 PIW 407 A 1 
HETATM 11 C C11 PIW . . . D 3 26.221 -16.927 -16.706 1 63.4 ? C11 PIW 407 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#