data_3NC6 # _model_server_result.job_id w4R50fPuozOHDsbMfaVsFA _model_server_result.datetime_utc '2025-04-03 21:03:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":407}' # _entry.id 3NC6 # _exptl.entry_id 3NC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-phenyl-1H-imidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NC6 _cell.length_a 64.95 _cell.length_b 106.9 _cell.length_c 142.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 389 A CYS 353 1_555 C FE HEM . A HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 B SG CYS 389 B CYS 353 1_555 F FE HEM . B HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C9 H8 N2' _chem_comp.formula_weight 144.173 _chem_comp.id PIW _chem_comp.mon_nstd_flag . _chem_comp.name 1-phenyl-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 PIW sing 342 n y C5 N1 PIW sing 343 n y N1 C6 PIW sing 344 n y N3 C2 PIW doub 345 n y C2 H2 PIW sing 346 n n N3 C4 PIW sing 347 n y C4 C5 PIW doub 348 n y C4 H4 PIW sing 349 n n C5 H5 PIW sing 350 n n C6 C11 PIW doub 351 n y C6 C7 PIW sing 352 n y C7 C8 PIW doub 353 n y C7 H7 PIW sing 354 n n C8 C9 PIW sing 355 n y C8 H8 PIW sing 356 n n C10 C9 PIW doub 357 n y C9 H9 PIW sing 358 n n C11 C10 PIW sing 359 n y C10 H10 PIW sing 360 n n C11 H11 PIW sing 361 n n # _atom_sites.entry_id 3NC6 _atom_sites.fract_transf_matrix[1][1] 0.015396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 406 1 HEM HEM . D 3 PIW A 1 407 1 PIW PIW . E 4 MG A 1 408 1 MG MG . F 2 HEM B 1 406 1 HEM HEM . G 3 PIW B 1 407 2 PIW PIW . H 5 HOH A 1 409 1 HOH HOH . H 5 HOH A 2 410 2 HOH HOH . H 5 HOH A 3 411 3 HOH HOH . H 5 HOH A 4 412 5 HOH HOH . H 5 HOH A 5 413 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PIW . . . G 3 37.204 6.498 25.344 1 46.3 ? N1 PIW 407 B 1 HETATM 2 C C2 PIW . . . G 3 36.029 6.711 24.721 1 47.1 ? C2 PIW 407 B 1 HETATM 3 N N3 PIW . . . G 3 36.077 5.917 23.616 1 47 ? N3 PIW 407 B 1 HETATM 4 C C4 PIW . . . G 3 37.271 5.24 23.625 1 46.3 ? C4 PIW 407 B 1 HETATM 5 C C5 PIW . . . G 3 37.998 5.604 24.742 1 45.58 ? C5 PIW 407 B 1 HETATM 6 C C6 PIW . . . G 3 37.537 7.067 26.531 1 45.41 ? C6 PIW 407 B 1 HETATM 7 C C7 PIW . . . G 3 36.711 6.929 27.67 1 43.9 ? C7 PIW 407 B 1 HETATM 8 C C8 PIW . . . G 3 37.018 7.473 28.919 1 42.5 ? C8 PIW 407 B 1 HETATM 9 C C9 PIW . . . G 3 38.195 8.182 29.108 1 41.82 ? C9 PIW 407 B 1 HETATM 10 C C10 PIW . . . G 3 39.051 8.325 28.025 1 43.39 ? C10 PIW 407 B 1 HETATM 11 C C11 PIW . . . G 3 38.724 7.782 26.768 1 44.61 ? C11 PIW 407 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #