data_3NC7
#
_model_server_result.job_id            9ciAvuffEPFewt4rpuXtiQ 
_model_server_result.datetime_utc      '2025-04-03 16:54:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":406}' 
#
_entry.id    3NC7 
#
_exptl.entry_id    3NC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NC7 
_cell.length_a            64.36 
_cell.length_b            106.79 
_cell.length_c            142.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 172 A ALA 136 1_555 E MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc2 A SG CYS 389 A CYS 353 1_555 C FE HEM . A HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc3 A OE1 GLU 398 A GLU 362 1_555 E MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc4 B O ALA 172 B ALA 136 1_555 H MG MG . B MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc5 B SG CYS 389 B CYS 353 1_555 F FE HEM . B HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc6 B OE1 GLU 398 B GLU 362 1_555 H MG MG . B MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3NC7 
_atom_sites.fract_transf_matrix[1][1]    0.015538 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 406 1 HEM HEM . 
D 3 PIY A 1 407 2 PIY PIY . 
E 4 MG A 1 408 2 MG MG . 
F 2 HEM B 1 406 1 HEM HEM . 
G 3 PIY B 1 407 1 PIY PIY . 
H 4 MG B 1 408 1 MG MG . 
I 5 HOH A 1 409 1 HOH HOH . 
J 5 HOH B 1 409 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 28.546 -21.452 -11.33 1 13.9 ? CHA HEM 406 A 1 
HETATM 2 C CHB HEM . . . C 2 29.722 -17.151 -9.629 1 13.92 ? CHB HEM 406 A 1 
HETATM 3 C CHC HEM . . . C 2 34.308 -17.786 -11.093 1 11.48 ? CHC HEM 406 A 1 
HETATM 4 C CHD HEM . . . C 2 33.192 -22.264 -12.574 1 11.55 ? CHD HEM 406 A 1 
HETATM 5 C C1A HEM . . . C 2 28.455 -20.251 -10.712 1 12.74 ? C1A HEM 406 A 1 
HETATM 6 C C2A HEM . . . C 2 27.277 -19.691 -10.109 1 13.7 ? C2A HEM 406 A 1 
HETATM 7 C C3A HEM . . . C 2 27.6 -18.493 -9.643 1 13.21 ? C3A HEM 406 A 1 
HETATM 8 C C4A HEM . . . C 2 28.996 -18.275 -9.935 1 13.49 ? C4A HEM 406 A 1 
HETATM 9 C CMA HEM . . . C 2 26.666 -17.508 -8.909 1 12.36 ? CMA HEM 406 A 1 
HETATM 10 C CAA HEM . . . C 2 25.882 -20.337 -10.055 1 16.42 ? CAA HEM 406 A 1 
HETATM 11 C CBA HEM . . . C 2 25.649 -21.174 -8.812 1 21.01 ? CBA HEM 406 A 1 
HETATM 12 C CGA HEM . . . C 2 24.553 -22.14 -9.197 1 24.8 ? CGA HEM 406 A 1 
HETATM 13 O O1A HEM . . . C 2 24.784 -23.384 -9.099 1 26.49 ? O1A HEM 406 A 1 
HETATM 14 O O2A HEM . . . C 2 23.448 -21.675 -9.619 1 26.65 ? O2A HEM 406 A 1 
HETATM 15 C C1B HEM . . . C 2 31.055 -16.944 -9.893 1 13.78 ? C1B HEM 406 A 1 
HETATM 16 C C2B HEM . . . C 2 31.782 -15.746 -9.545 1 13.9 ? C2B HEM 406 A 1 
HETATM 17 C C3B HEM . . . C 2 33.063 -15.909 -9.933 1 13.63 ? C3B HEM 406 A 1 
HETATM 18 C C4B HEM . . . C 2 33.171 -17.229 -10.547 1 12.93 ? C4B HEM 406 A 1 
HETATM 19 C CMB HEM . . . C 2 31.136 -14.53 -8.832 1 13.97 ? CMB HEM 406 A 1 
HETATM 20 C CAB HEM . . . C 2 34.242 -14.911 -9.746 1 13.79 ? CAB HEM 406 A 1 
HETATM 21 C CBB HEM . . . C 2 34.3 -13.691 -10.289 1 14.39 ? CBB HEM 406 A 1 
HETATM 22 C C1C HEM . . . C 2 34.409 -19.054 -11.6 1 11.3 ? C1C HEM 406 A 1 
HETATM 23 C C2C HEM . . . C 2 35.616 -19.677 -12.088 1 11.35 ? C2C HEM 406 A 1 
HETATM 24 C C3C HEM . . . C 2 35.305 -20.914 -12.495 1 12.04 ? C3C HEM 406 A 1 
HETATM 25 C C4C HEM . . . C 2 33.886 -21.114 -12.271 1 12.14 ? C4C HEM 406 A 1 
HETATM 26 C CMC HEM . . . C 2 37.002 -19.005 -12.125 1 11.91 ? CMC HEM 406 A 1 
HETATM 27 C CAC HEM . . . C 2 36.239 -21.99 -13.104 1 11.78 ? CAC HEM 406 A 1 
HETATM 28 C CBC HEM . . . C 2 37.49 -22.125 -12.665 1 12.66 ? CBC HEM 406 A 1 
HETATM 29 C C1D HEM . . . C 2 31.841 -22.453 -12.448 1 12.52 ? C1D HEM 406 A 1 
HETATM 30 C C2D HEM . . . C 2 31.089 -23.6 -12.93 1 14.23 ? C2D HEM 406 A 1 
HETATM 31 C C3D HEM . . . C 2 29.628 -23.336 -12.546 1 15.95 ? C3D HEM 406 A 1 
HETATM 32 C C4D HEM . . . C 2 29.662 -22.054 -11.864 1 14.5 ? C4D HEM 406 A 1 
HETATM 33 C CMD HEM . . . C 2 31.608 -24.846 -13.676 1 13.6 ? CMD HEM 406 A 1 
HETATM 34 C CAD HEM . . . C 2 28.393 -24.254 -12.801 1 19.21 ? CAD HEM 406 A 1 
HETATM 35 C CBD HEM . . . C 2 27.328 -23.601 -13.693 1 23.02 ? CBD HEM 406 A 1 
HETATM 36 C CGD HEM . . . C 2 27.238 -24.38 -14.992 1 25.86 ? CGD HEM 406 A 1 
HETATM 37 O O1D HEM . . . C 2 26.719 -25.53 -14.94 1 27.31 ? O1D HEM 406 A 1 
HETATM 38 O O2D HEM . . . C 2 27.677 -23.883 -16.077 1 26.83 ? O2D HEM 406 A 1 
HETATM 39 N NA HEM . . . C 2 29.482 -19.375 -10.592 1 12.79 ? NA HEM 406 A 1 
HETATM 40 N NB HEM . . . C 2 31.922 -17.83 -10.508 1 13.29 ? NB HEM 406 A 1 
HETATM 41 N NC HEM . . . C 2 33.369 -19.956 -11.724 1 12.23 ? NC HEM 406 A 1 
HETATM 42 N ND HEM . . . C 2 30.966 -21.572 -11.832 1 12.91 ? ND HEM 406 A 1 
HETATM 43 FE FE HEM . . . C 2 31.34 -19.746 -11.126 1 13.69 ? FE HEM 406 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#