data_3NC9
#
_model_server_result.job_id            YLVlPdyHltlF-f0fGwBE5g 
_model_server_result.datetime_utc      '2024-11-20 00:28:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    3NC9 
#
_exptl.entry_id    3NC9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.48 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[3-(methylsulfanyl)-1-phenyl-1H-indazol-6-yl]piperidine-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NC9 
_cell.length_a            82.696 
_cell.length_b            85.692 
_cell.length_c            136.852 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H22 N4 O S' 
_chem_comp.formula_weight    366.48 
_chem_comp.id                TR3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[3-(methylsulfanyl)-1-phenyl-1H-indazol-6-yl]piperidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TR3 doub 310 n y 
C1 C6 TR3 sing 311 n y 
C2 C3 TR3 sing 312 n y 
C3 C4 TR3 doub 313 n y 
C3 C12 TR3 sing 314 n y 
C4 C5 TR3 sing 315 n y 
C4 N11 TR3 sing 316 n y 
C5 C6 TR3 doub 317 n y 
C6 N27 TR3 sing 318 n n 
N10 N11 TR3 sing 319 n y 
N10 C12 TR3 doub 320 n y 
N11 C16 TR3 sing 321 n y 
C12 S24 TR3 sing 322 n n 
C13 C14 TR3 doub 323 n y 
C13 C18 TR3 sing 324 n y 
C14 C15 TR3 sing 325 n y 
C15 C16 TR3 doub 326 n y 
C16 C17 TR3 sing 327 n y 
C17 C18 TR3 doub 328 n y 
S24 C25 TR3 sing 329 n n 
C26 N27 TR3 sing 330 n n 
C26 O28 TR3 doub 331 n n 
C26 C32 TR3 sing 332 n n 
C30 C31 TR3 sing 333 n n 
C30 N35 TR3 sing 334 n n 
C31 C32 TR3 sing 335 n n 
C32 C33 TR3 sing 336 n n 
C33 C34 TR3 sing 337 n n 
C34 N35 TR3 sing 338 n n 
C1 H1 TR3 sing 339 n n 
C2 H2 TR3 sing 340 n n 
C5 H5 TR3 sing 341 n n 
C13 H13 TR3 sing 342 n n 
C14 H14 TR3 sing 343 n n 
C15 H15 TR3 sing 344 n n 
C17 H17 TR3 sing 345 n n 
C18 H18 TR3 sing 346 n n 
C25 H25 TR3 sing 347 n n 
C25 H25A TR3 sing 348 n n 
C25 H25B TR3 sing 349 n n 
N27 HN27 TR3 sing 350 n n 
C30 H30 TR3 sing 351 n n 
C30 H30A TR3 sing 352 n n 
C31 H31 TR3 sing 353 n n 
C31 H31A TR3 sing 354 n n 
C32 H32 TR3 sing 355 n n 
C33 H33 TR3 sing 356 n n 
C33 H33A TR3 sing 357 n n 
C34 H34 TR3 sing 358 n n 
C34 H34A TR3 sing 359 n n 
N35 HN35 TR3 sing 360 n n 
#
_atom_sites.entry_id                     3NC9 
_atom_sites.fract_transf_matrix[1][1]    0.012092 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TR3 B 1 299 1 TR3 TR3 . 
D 2 TR3 B 1 300 2 TR3 TR3 . 
E 3 SO4 B 1 301 2 SO4 SO4 . 
F 3 SO4 B 1 302 3 SO4 SO4 . 
G 4 HOH A 1 299 3 HOH HOH . 
G 4 HOH A 2 300 6 HOH HOH . 
G 4 HOH A 3 301 8 HOH HOH . 
G 4 HOH A 4 302 16 HOH HOH . 
G 4 HOH A 5 303 21 HOH HOH . 
G 4 HOH A 6 304 22 HOH HOH . 
G 4 HOH A 7 305 26 HOH HOH . 
G 4 HOH A 8 306 28 HOH HOH . 
G 4 HOH A 9 307 30 HOH HOH . 
G 4 HOH A 10 308 31 HOH HOH . 
G 4 HOH A 11 309 34 HOH HOH . 
G 4 HOH A 12 310 36 HOH HOH . 
G 4 HOH A 13 311 39 HOH HOH . 
H 4 HOH B 1 303 1 HOH HOH . 
H 4 HOH B 2 304 2 HOH HOH . 
H 4 HOH B 3 305 4 HOH HOH . 
H 4 HOH B 4 306 5 HOH HOH . 
H 4 HOH B 5 307 7 HOH HOH . 
H 4 HOH B 6 308 9 HOH HOH . 
H 4 HOH B 7 309 10 HOH HOH . 
H 4 HOH B 8 310 11 HOH HOH . 
H 4 HOH B 9 311 12 HOH HOH . 
H 4 HOH B 10 312 13 HOH HOH . 
H 4 HOH B 11 313 14 HOH HOH . 
H 4 HOH B 12 314 15 HOH HOH . 
H 4 HOH B 13 315 17 HOH HOH . 
H 4 HOH B 14 316 18 HOH HOH . 
H 4 HOH B 15 317 19 HOH HOH . 
H 4 HOH B 16 318 20 HOH HOH . 
H 4 HOH B 17 319 23 HOH HOH . 
H 4 HOH B 18 320 24 HOH HOH . 
H 4 HOH B 19 321 25 HOH HOH . 
H 4 HOH B 20 322 27 HOH HOH . 
H 4 HOH B 21 323 29 HOH HOH . 
H 4 HOH B 22 324 32 HOH HOH . 
H 4 HOH B 23 325 33 HOH HOH . 
H 4 HOH B 24 326 35 HOH HOH . 
H 4 HOH B 25 327 37 HOH HOH . 
H 4 HOH B 26 328 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TR3 . . . D 2 -22.423 21.301 55.044 1 55.73 ? C1 TR3 300 B 1 
HETATM 2 C C2 TR3 . . . D 2 -22.555 22.185 56.14 1 59.35 ? C2 TR3 300 B 1 
HETATM 3 C C3 TR3 . . . D 2 -23.523 23.222 56.127 1 56.85 ? C3 TR3 300 B 1 
HETATM 4 C C4 TR3 . . . D 2 -24.342 23.347 54.97 1 53.13 ? C4 TR3 300 B 1 
HETATM 5 C C5 TR3 . . . D 2 -24.216 22.485 53.873 1 57.59 ? C5 TR3 300 B 1 
HETATM 6 C C6 TR3 . . . D 2 -23.257 21.454 53.907 1 60.26 ? C6 TR3 300 B 1 
HETATM 7 N N10 TR3 . . . D 2 -24.908 24.992 56.459 1 51.99 ? N10 TR3 300 B 1 
HETATM 8 N N11 TR3 . . . D 2 -25.157 24.434 55.238 1 56.03 ? N11 TR3 300 B 1 
HETATM 9 C C12 TR3 . . . D 2 -23.954 24.28 56.992 1 52.32 ? C12 TR3 300 B 1 
HETATM 10 C C13 TR3 . . . D 2 -28.266 26.026 52.833 1 63.49 ? C13 TR3 300 B 1 
HETATM 11 C C14 TR3 . . . D 2 -28.348 26.124 54.233 1 57.26 ? C14 TR3 300 B 1 
HETATM 12 C C15 TR3 . . . D 2 -27.31 25.588 55.022 1 56.62 ? C15 TR3 300 B 1 
HETATM 13 C C16 TR3 . . . D 2 -26.186 24.967 54.421 1 61.49 ? C16 TR3 300 B 1 
HETATM 14 C C17 TR3 . . . D 2 -26.113 24.876 53.011 1 60.3 ? C17 TR3 300 B 1 
HETATM 15 C C18 TR3 . . . D 2 -27.153 25.409 52.225 1 62.62 ? C18 TR3 300 B 1 
HETATM 16 S S24 TR3 . . . D 2 -23.393 24.595 58.629 1 54.43 ? S24 TR3 300 B 1 
HETATM 17 C C25 TR3 . . . D 2 -24.277 23.379 59.639 1 51.17 ? C25 TR3 300 B 1 
HETATM 18 C C26 TR3 . . . D 2 -24.046 20.245 51.913 1 69.73 ? C26 TR3 300 B 1 
HETATM 19 N N27 TR3 . . . D 2 -23.141 20.513 52.861 1 64.6 ? N27 TR3 300 B 1 
HETATM 20 O O28 TR3 . . . D 2 -25.222 20.625 51.962 1 70.55 ? O28 TR3 300 B 1 
HETATM 21 C C30 TR3 . . . D 2 -24.118 17.753 48.899 1 78.48 ? C30 TR3 300 B 1 
HETATM 22 C C31 TR3 . . . D 2 -24.484 19.005 49.713 1 74.23 ? C31 TR3 300 B 1 
HETATM 23 C C32 TR3 . . . D 2 -23.637 19.085 50.998 1 71.06 ? C32 TR3 300 B 1 
HETATM 24 C C33 TR3 . . . D 2 -23.733 17.751 51.753 1 74 ? C33 TR3 300 B 1 
HETATM 25 C C34 TR3 . . . D 2 -23.319 16.59 50.836 1 83.07 ? C34 TR3 300 B 1 
HETATM 26 N N35 TR3 . . . D 2 -24.255 16.545 49.716 1 79.56 ? N35 TR3 300 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#