data_3NCF
#
_model_server_result.job_id            jrXUY5qxi6o5yTriQT6FOQ 
_model_server_result.datetime_utc      '2024-11-22 23:44:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ncf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":212}' 
#
_entry.id    3NCF 
#
_exptl.entry_id    3NCF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NCF 
_cell.length_a            123.252 
_cell.length_b            123.252 
_cell.length_c            73.108 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NCF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 45 A CYS 58 1_555 A SG CYS 161 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf2 A SG CYS 178 A CYS 191 1_555 A SG CYS 186 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 B SG CYS 12 B CYS 12 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
disulf ? disulf4 B SG CYS 51 B CYS 51 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc1 A OD1 ASP 55 A ASP 68 1_555 D NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc2 G O HOH . A HOH 230 1_555 D NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc3 G O HOH . A HOH 234 1_555 D NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc4 B OG1 THR 19 B THR 19 1_555 C NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc5 B OG1 THR 21 B THR 21 1_555 C NA NA . B NA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc6 B O TYR 54 B TYR 54 1_555 F NA NA . B NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc7 B O SER 61 B SER 61 1_555 F NA NA . B NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc8 B O LYS 66 B LYS 66 1_555 D NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc9 B O THR 69 B THR 69 1_555 D NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc10 C NA NA . B NA 211 1_555 H O HOH . B HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? 
metalc ? metalc11 D NA NA . B NA 212 1_555 H O HOH . B HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc12 F NA NA . B NA 214 1_555 H O HOH . B HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc13 F NA NA . B NA 214 1_555 H O HOH . B HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NCF 
_atom_sites.fract_transf_matrix[1][1]    0.008113 
_atom_sites.fract_transf_matrix[1][2]    0.004684 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013678 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA B 1 211 1 NA NA . 
D 3 NA B 1 212 2 NA NA . 
E 4 CL B 1 213 3 CL CL . 
F 3 NA B 1 214 4 NA NA . 
G 5 HOH A 1 5 5 HOH HOH . 
G 5 HOH A 2 6 6 HOH HOH . 
G 5 HOH A 3 11 11 HOH HOH . 
G 5 HOH A 4 12 12 HOH HOH . 
G 5 HOH A 5 200 200 HOH HOH . 
G 5 HOH A 6 201 201 HOH HOH . 
G 5 HOH A 7 202 16 HOH HOH . 
G 5 HOH A 8 203 18 HOH HOH . 
G 5 HOH A 9 204 21 HOH HOH . 
G 5 HOH A 10 205 22 HOH HOH . 
G 5 HOH A 11 206 23 HOH HOH . 
G 5 HOH A 12 207 207 HOH HOH . 
G 5 HOH A 13 208 25 HOH HOH . 
G 5 HOH A 14 209 28 HOH HOH . 
G 5 HOH A 15 210 31 HOH HOH . 
G 5 HOH A 16 211 211 HOH HOH . 
G 5 HOH A 17 212 32 HOH HOH . 
G 5 HOH A 18 213 213 HOH HOH . 
G 5 HOH A 19 214 36 HOH HOH . 
G 5 HOH A 20 216 216 HOH HOH . 
G 5 HOH A 21 217 37 HOH HOH . 
G 5 HOH A 22 218 41 HOH HOH . 
G 5 HOH A 23 219 43 HOH HOH . 
G 5 HOH A 24 220 45 HOH HOH . 
G 5 HOH A 25 221 46 HOH HOH . 
G 5 HOH A 26 222 48 HOH HOH . 
G 5 HOH A 27 223 58 HOH HOH . 
G 5 HOH A 28 224 59 HOH HOH . 
G 5 HOH A 29 225 64 HOH HOH . 
G 5 HOH A 30 226 65 HOH HOH . 
G 5 HOH A 31 227 67 HOH HOH . 
G 5 HOH A 32 228 70 HOH HOH . 
G 5 HOH A 33 229 74 HOH HOH . 
G 5 HOH A 34 230 81 HOH HOH . 
G 5 HOH A 35 231 84 HOH HOH . 
G 5 HOH A 36 232 88 HOH HOH . 
G 5 HOH A 37 233 89 HOH HOH . 
G 5 HOH A 38 234 90 HOH HOH . 
G 5 HOH A 39 235 91 HOH HOH . 
G 5 HOH A 40 236 92 HOH HOH . 
G 5 HOH A 41 237 93 HOH HOH . 
G 5 HOH A 42 238 94 HOH HOH . 
G 5 HOH A 43 239 97 HOH HOH . 
G 5 HOH A 44 240 100 HOH HOH . 
G 5 HOH A 45 241 101 HOH HOH . 
G 5 HOH A 46 242 102 HOH HOH . 
G 5 HOH A 47 243 103 HOH HOH . 
G 5 HOH A 48 244 106 HOH HOH . 
G 5 HOH A 49 245 108 HOH HOH . 
G 5 HOH A 50 246 109 HOH HOH . 
G 5 HOH A 51 247 111 HOH HOH . 
G 5 HOH A 52 248 113 HOH HOH . 
G 5 HOH A 53 249 114 HOH HOH . 
G 5 HOH A 54 250 115 HOH HOH . 
G 5 HOH A 55 251 116 HOH HOH . 
G 5 HOH A 56 252 117 HOH HOH . 
G 5 HOH A 57 253 119 HOH HOH . 
G 5 HOH A 58 254 120 HOH HOH . 
G 5 HOH A 59 255 122 HOH HOH . 
G 5 HOH A 60 256 123 HOH HOH . 
G 5 HOH A 61 257 124 HOH HOH . 
G 5 HOH A 62 258 127 HOH HOH . 
G 5 HOH A 63 259 128 HOH HOH . 
G 5 HOH A 64 260 129 HOH HOH . 
G 5 HOH A 65 261 132 HOH HOH . 
G 5 HOH A 66 262 135 HOH HOH . 
G 5 HOH A 67 263 139 HOH HOH . 
G 5 HOH A 68 264 144 HOH HOH . 
G 5 HOH A 69 265 147 HOH HOH . 
G 5 HOH A 70 266 148 HOH HOH . 
G 5 HOH A 71 267 149 HOH HOH . 
G 5 HOH A 72 268 150 HOH HOH . 
G 5 HOH A 73 269 151 HOH HOH . 
G 5 HOH A 74 270 154 HOH HOH . 
G 5 HOH A 75 271 157 HOH HOH . 
G 5 HOH A 76 272 168 HOH HOH . 
G 5 HOH A 77 273 174 HOH HOH . 
G 5 HOH A 78 274 175 HOH HOH . 
G 5 HOH A 79 275 176 HOH HOH . 
G 5 HOH A 80 276 177 HOH HOH . 
G 5 HOH A 81 277 186 HOH HOH . 
G 5 HOH A 82 278 187 HOH HOH . 
G 5 HOH A 83 279 190 HOH HOH . 
G 5 HOH A 84 280 191 HOH HOH . 
G 5 HOH A 85 281 192 HOH HOH . 
G 5 HOH A 86 282 193 HOH HOH . 
G 5 HOH A 87 283 194 HOH HOH . 
G 5 HOH A 88 284 195 HOH HOH . 
G 5 HOH A 89 285 196 HOH HOH . 
G 5 HOH A 90 288 199 HOH HOH . 
H 5 HOH B 1 215 215 HOH HOH . 
H 5 HOH B 2 216 2 HOH HOH . 
H 5 HOH B 3 217 3 HOH HOH . 
H 5 HOH B 4 218 4 HOH HOH . 
H 5 HOH B 5 219 7 HOH HOH . 
H 5 HOH B 6 220 8 HOH HOH . 
H 5 HOH B 7 221 9 HOH HOH . 
H 5 HOH B 8 222 10 HOH HOH . 
H 5 HOH B 9 223 13 HOH HOH . 
H 5 HOH B 10 224 14 HOH HOH . 
H 5 HOH B 11 225 15 HOH HOH . 
H 5 HOH B 12 226 17 HOH HOH . 
H 5 HOH B 13 227 19 HOH HOH . 
H 5 HOH B 14 228 20 HOH HOH . 
H 5 HOH B 15 229 24 HOH HOH . 
H 5 HOH B 16 230 26 HOH HOH . 
H 5 HOH B 17 231 27 HOH HOH . 
H 5 HOH B 18 232 29 HOH HOH . 
H 5 HOH B 19 233 30 HOH HOH . 
H 5 HOH B 20 234 33 HOH HOH . 
H 5 HOH B 21 235 34 HOH HOH . 
H 5 HOH B 22 236 35 HOH HOH . 
H 5 HOH B 23 237 38 HOH HOH . 
H 5 HOH B 24 238 39 HOH HOH . 
H 5 HOH B 25 239 40 HOH HOH . 
H 5 HOH B 26 240 42 HOH HOH . 
H 5 HOH B 27 241 44 HOH HOH . 
H 5 HOH B 28 242 47 HOH HOH . 
H 5 HOH B 29 243 49 HOH HOH . 
H 5 HOH B 30 244 50 HOH HOH . 
H 5 HOH B 31 245 51 HOH HOH . 
H 5 HOH B 32 246 52 HOH HOH . 
H 5 HOH B 33 247 53 HOH HOH . 
H 5 HOH B 34 248 54 HOH HOH . 
H 5 HOH B 35 249 55 HOH HOH . 
H 5 HOH B 36 250 56 HOH HOH . 
H 5 HOH B 37 251 57 HOH HOH . 
H 5 HOH B 38 252 60 HOH HOH . 
H 5 HOH B 39 253 61 HOH HOH . 
H 5 HOH B 40 254 62 HOH HOH . 
H 5 HOH B 41 255 63 HOH HOH . 
H 5 HOH B 42 256 66 HOH HOH . 
H 5 HOH B 43 257 68 HOH HOH . 
H 5 HOH B 44 258 69 HOH HOH . 
H 5 HOH B 45 259 71 HOH HOH . 
H 5 HOH B 46 260 72 HOH HOH . 
H 5 HOH B 47 261 73 HOH HOH . 
H 5 HOH B 48 262 75 HOH HOH . 
H 5 HOH B 49 263 76 HOH HOH . 
H 5 HOH B 50 264 77 HOH HOH . 
H 5 HOH B 51 265 78 HOH HOH . 
H 5 HOH B 52 266 79 HOH HOH . 
H 5 HOH B 53 267 80 HOH HOH . 
H 5 HOH B 54 268 82 HOH HOH . 
H 5 HOH B 55 269 83 HOH HOH . 
H 5 HOH B 56 270 85 HOH HOH . 
H 5 HOH B 57 271 86 HOH HOH . 
H 5 HOH B 58 272 87 HOH HOH . 
H 5 HOH B 59 273 95 HOH HOH . 
H 5 HOH B 60 274 96 HOH HOH . 
H 5 HOH B 61 275 98 HOH HOH . 
H 5 HOH B 62 276 99 HOH HOH . 
H 5 HOH B 63 277 104 HOH HOH . 
H 5 HOH B 64 278 105 HOH HOH . 
H 5 HOH B 65 279 107 HOH HOH . 
H 5 HOH B 66 280 110 HOH HOH . 
H 5 HOH B 67 281 112 HOH HOH . 
H 5 HOH B 68 282 118 HOH HOH . 
H 5 HOH B 69 283 121 HOH HOH . 
H 5 HOH B 70 284 125 HOH HOH . 
H 5 HOH B 71 285 126 HOH HOH . 
H 5 HOH B 72 286 197 HOH HOH . 
H 5 HOH B 73 287 198 HOH HOH . 
H 5 HOH B 74 288 133 HOH HOH . 
H 5 HOH B 75 289 134 HOH HOH . 
H 5 HOH B 76 290 136 HOH HOH . 
H 5 HOH B 77 291 137 HOH HOH . 
H 5 HOH B 78 292 138 HOH HOH . 
H 5 HOH B 79 293 140 HOH HOH . 
H 5 HOH B 80 294 141 HOH HOH . 
H 5 HOH B 81 295 142 HOH HOH . 
H 5 HOH B 82 296 143 HOH HOH . 
H 5 HOH B 83 297 145 HOH HOH . 
H 5 HOH B 84 298 146 HOH HOH . 
H 5 HOH B 85 299 152 HOH HOH . 
H 5 HOH B 86 300 153 HOH HOH . 
H 5 HOH B 87 301 155 HOH HOH . 
H 5 HOH B 88 302 156 HOH HOH . 
H 5 HOH B 89 303 158 HOH HOH . 
H 5 HOH B 90 304 159 HOH HOH . 
H 5 HOH B 91 305 160 HOH HOH . 
H 5 HOH B 92 306 161 HOH HOH . 
H 5 HOH B 93 307 162 HOH HOH . 
H 5 HOH B 94 308 163 HOH HOH . 
H 5 HOH B 95 309 164 HOH HOH . 
H 5 HOH B 96 310 165 HOH HOH . 
H 5 HOH B 97 311 166 HOH HOH . 
H 5 HOH B 98 312 167 HOH HOH . 
H 5 HOH B 99 313 169 HOH HOH . 
H 5 HOH B 100 314 170 HOH HOH . 
H 5 HOH B 101 315 171 HOH HOH . 
H 5 HOH B 102 316 172 HOH HOH . 
H 5 HOH B 103 317 173 HOH HOH . 
H 5 HOH B 104 318 178 HOH HOH . 
H 5 HOH B 105 319 179 HOH HOH . 
H 5 HOH B 106 320 180 HOH HOH . 
H 5 HOH B 107 321 181 HOH HOH . 
H 5 HOH B 108 322 182 HOH HOH . 
H 5 HOH B 109 323 183 HOH HOH . 
H 5 HOH B 110 324 184 HOH HOH . 
H 5 HOH B 111 325 185 HOH HOH . 
H 5 HOH B 112 326 188 HOH HOH . 
H 5 HOH B 113 327 189 HOH HOH . 
H 5 HOH B 114 328 202 HOH HOH . 
H 5 HOH B 115 329 203 HOH HOH . 
H 5 HOH B 116 330 204 HOH HOH . 
H 5 HOH B 117 331 205 HOH HOH . 
H 5 HOH B 118 332 206 HOH HOH . 
H 5 HOH B 119 333 208 HOH HOH . 
H 5 HOH B 120 334 209 HOH HOH . 
H 5 HOH B 121 335 210 HOH HOH . 
H 5 HOH B 122 336 212 HOH HOH . 
H 5 HOH B 123 337 214 HOH HOH . 
H 5 HOH B 124 338 1 HOH HOH . 
H 5 HOH B 125 339 130 HOH HOH . 
H 5 HOH B 126 340 131 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -29.977 
_atom_site.Cartn_y               -26.788 
_atom_site.Cartn_z               11.144 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.99 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           212 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#