data_3NCG # _model_server_result.job_id xCARoB8zieflB5cAc3aRlA _model_server_result.datetime_utc '2024-11-16 07:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ncg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":552}' # _entry.id 3NCG # _exptl.entry_id 3NCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.78 _cell.angle_gamma 90 _cell.entry_id 3NCG _cell.length_a 59.991 _cell.length_b 55.968 _cell.length_c 81.972 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 341 A ASP 393 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A OD1 ASN 343 A ASN 395 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A OD1 ASP 345 A ASP 397 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc4 A O MET 347 A MET 399 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 A OE1 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc6 A OE2 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 A OD1 ASP 391 A ASP 443 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 A OD1 ASP 393 A ASP 445 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 A OG SER 395 A SER 447 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 A O SER 397 A SER 449 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 A OE2 GLU 399 A GLU 451 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc12 A OE1 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 A OE2 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc14 A OD1 ASP 427 A ASP 479 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc15 A OD1 ASP 429 A ASP 481 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc16 A OG SER 431 A SER 483 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc17 A O LYS 433 A LYS 485 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc18 A OE2 GLU 438 A GLU 490 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc19 A OE1 GLU 438 A GLU 490 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NCG _atom_sites.fract_transf_matrix[1][1] 0.016669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 551 551 CA CA . C 2 CA A 1 552 552 CA CA . D 2 CA A 1 553 553 CA CA . E 3 BK1 A 1 561 561 BK1 BK1 . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.883 _atom_site.Cartn_y 14.001 _atom_site.Cartn_z 30.393 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 552 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #