data_3NCG # _model_server_result.job_id 4sfWg9CGH-aMzz-ngLxJHA _model_server_result.datetime_utc '2024-11-16 07:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ncg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":561}' # _entry.id 3NCG # _exptl.entry_id 3NCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.388 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-methylethyl)-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.78 _cell.angle_gamma 90 _cell.entry_id 3NCG _cell.length_a 59.991 _cell.length_b 55.968 _cell.length_c 81.972 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 341 A ASP 393 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A OD1 ASN 343 A ASN 395 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A OD1 ASP 345 A ASP 397 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc4 A O MET 347 A MET 399 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 A OE1 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc6 A OE2 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 A OD1 ASP 391 A ASP 443 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 A OD1 ASP 393 A ASP 445 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 A OG SER 395 A SER 447 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 A O SER 397 A SER 449 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 A OE2 GLU 399 A GLU 451 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc12 A OE1 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 A OE2 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc14 A OD1 ASP 427 A ASP 479 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc15 A OD1 ASP 429 A ASP 481 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc16 A OG SER 431 A SER 483 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc17 A O LYS 433 A LYS 485 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc18 A OE2 GLU 438 A GLU 490 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc19 A OE1 GLU 438 A GLU 490 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? # _chem_comp.formula 'C19 H19 N5' _chem_comp.formula_weight 317.388 _chem_comp.id BK1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-methylethyl)-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-Amino-1-iso-propyl-3-(1-naphthylmethyl)pyrazolo[3,4-d]pyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 BK1 doub 70 n y C6 N1 BK1 sing 71 n y N3 C2 BK1 sing 72 n y C2 H2 BK1 sing 73 n n C4 N3 BK1 doub 74 n y NAX C4 BK1 sing 75 n y C4 C5 BK1 sing 76 n y CAR C5 BK1 sing 77 n y C5 C6 BK1 doub 78 n y C6 NAC BK1 sing 79 n n CAW CAA BK1 sing 80 n n CAA HAA BK1 sing 81 n n CAA HAAA BK1 sing 82 n n CAA HAAB BK1 sing 83 n n CAB CAW BK1 sing 84 n n CAB HAB BK1 sing 85 n n CAB HABA BK1 sing 86 n n CAB HABB BK1 sing 87 n n NAC HNAC BK1 sing 88 n n NAC HNAA BK1 sing 89 n n CAE CAD BK1 doub 90 n y CAD CAH BK1 sing 91 n y CAD HAD BK1 sing 92 n n CAJ CAE BK1 sing 93 n y CAE HAE BK1 sing 94 n n CAG CAF BK1 sing 95 n y CAF CAI BK1 doub 96 n y CAF HAF BK1 sing 97 n n CAQ CAG BK1 doub 98 n y CAG HAG BK1 sing 99 n n CAS CAH BK1 doub 100 n y CAH HAH BK1 sing 101 n n CAS CAI BK1 sing 102 n y CAI HAI BK1 sing 103 n n CAJ CAT BK1 doub 104 n y CAJ HAJ BK1 sing 105 n n CAR CAL BK1 sing 106 n n CAL CAQ BK1 sing 107 n n CAL HAL BK1 sing 108 n n CAL HALA BK1 sing 109 n n NAX NAO BK1 sing 110 n y NAO CAR BK1 doub 111 n y CAQ CAT BK1 sing 112 n y CAT CAS BK1 sing 113 n y CAW NAX BK1 sing 114 n n CAW HAW BK1 sing 115 n n # _atom_sites.entry_id 3NCG _atom_sites.fract_transf_matrix[1][1] 0.016669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 551 551 CA CA . C 2 CA A 1 552 552 CA CA . D 2 CA A 1 553 553 CA CA . E 3 BK1 A 1 561 561 BK1 BK1 . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK1 . . . E 3 27.49 6.233 6.704 1 32.82 ? N1 BK1 561 A 1 HETATM 2 C C2 BK1 . . . E 3 27.529 5.508 5.605 1 34.5 ? C2 BK1 561 A 1 HETATM 3 N N3 BK1 . . . E 3 26.896 5.889 4.502 1 37.13 ? N3 BK1 561 A 1 HETATM 4 C C4 BK1 . . . E 3 26.205 7.029 4.462 1 30.65 ? C4 BK1 561 A 1 HETATM 5 C C5 BK1 . . . E 3 26.131 7.835 5.593 1 34.16 ? C5 BK1 561 A 1 HETATM 6 C C6 BK1 . . . E 3 26.811 7.392 6.741 1 33.39 ? C6 BK1 561 A 1 HETATM 7 C CAA BK1 . . . E 3 25.378 8.241 1.14 1 36.31 ? CAA BK1 561 A 1 HETATM 8 C CAB BK1 . . . E 3 23.824 6.596 2.118 1 27.67 ? CAB BK1 561 A 1 HETATM 9 N NAC BK1 . . . E 3 26.815 8.045 7.883 1 33.79 ? NAC BK1 561 A 1 HETATM 10 C CAD BK1 . . . E 3 24.634 15.087 7.333 1 26.94 ? CAD BK1 561 A 1 HETATM 11 C CAE BK1 . . . E 3 23.712 14.101 7.039 1 29.55 ? CAE BK1 561 A 1 HETATM 12 C CAF BK1 . . . E 3 28.196 11.934 6.494 1 30.66 ? CAF BK1 561 A 1 HETATM 13 C CAG BK1 . . . E 3 27.254 10.953 6.2 1 28.03 ? CAG BK1 561 A 1 HETATM 14 C CAH BK1 . . . E 3 25.984 14.772 7.273 1 38.67 ? CAH BK1 561 A 1 HETATM 15 C CAI BK1 . . . E 3 27.785 13.21 6.861 1 31.35 ? CAI BK1 561 A 1 HETATM 16 C CAJ BK1 . . . E 3 24.139 12.828 6.672 1 32.82 ? CAJ BK1 561 A 1 HETATM 17 C CAL BK1 . . . E 3 24.832 10.159 5.937 1 35.07 ? CAL BK1 561 A 1 HETATM 18 N NAO BK1 . . . E 3 25.005 8.677 3.925 1 36.93 ? NAO BK1 561 A 1 HETATM 19 C CAQ BK1 . . . E 3 25.89 11.24 6.259 1 32.78 ? CAQ BK1 561 A 1 HETATM 20 C CAR BK1 . . . E 3 25.336 8.914 5.191 1 32.41 ? CAR BK1 561 A 1 HETATM 21 C CAS BK1 . . . E 3 26.425 13.497 6.917 1 31.81 ? CAS BK1 561 A 1 HETATM 22 C CAT BK1 . . . E 3 25.496 12.523 6.609 1 27.92 ? CAT BK1 561 A 1 HETATM 23 C CAW BK1 . . . E 3 25.276 7.111 2.154 1 32.28 ? CAW BK1 561 A 1 HETATM 24 N NAX BK1 . . . E 3 25.512 7.626 3.513 1 33.15 ? NAX BK1 561 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 24 #