data_3NCU # _model_server_result.job_id 6hUGYpiijmbrTN_frJSrdA _model_server_result.datetime_utc '2024-11-04 23:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ncu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3NCU # _exptl.entry_id 3NCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NCU _cell.length_a 83.462 _cell.length_b 83.462 _cell.length_c 110.364 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' GDP 1 C GDP 1 1_555 C P A 2 C A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 D O3' GDP 1 D GDP 1 1_555 D P A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 19 A CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 22 A CYS 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 73 A CYS 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 78 A CYS 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 F ZN ZN . B ZN 2 1_555 B SG CYS 19 B CYS 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 F ZN ZN . B ZN 2 1_555 B SG CYS 22 B CYS 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 F ZN ZN . B ZN 2 1_555 B SG CYS 73 B CYS 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc8 F ZN ZN . B ZN 2 1_555 B SG CYS 78 B CYS 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? hydrog WATSON-CRICK hydrog1 C N1 GDP 1 C GDP 1 1_555 D N3 C 12 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 GDP 1 C GDP 1 1_555 D O2 C 12 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 GDP 1 C GDP 1 1_555 D N4 C 12 D C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 A 2 C A 2 1_555 D N3 U 11 D U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 A 2 C A 2 1_555 D O4 U 11 D U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 C 3 C C 3 1_555 D N1 G 10 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 C 3 C C 3 1_555 D O6 G 10 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 C 3 C C 3 1_555 D N2 G 10 D G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N1 G 4 C G 4 1_555 D N3 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N2 G 4 C G 4 1_555 D O2 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O6 G 4 C G 4 1_555 D N4 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N3 C 5 C C 5 1_555 D N1 G 8 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N4 C 5 C C 5 1_555 D O6 G 8 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O2 C 5 C C 5 1_555 D N2 G 8 D G 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N3 U 6 C U 6 1_555 D N1 A 7 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O4 U 6 C U 6 1_555 D N6 A 7 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 A 7 C A 7 1_555 D N3 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N6 A 7 C A 7 1_555 D O4 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 G 8 C G 8 1_555 D N3 C 5 D C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N2 G 8 C G 8 1_555 D O2 C 5 D C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O6 G 8 C G 8 1_555 D N4 C 5 D C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 C 9 C C 9 1_555 D N1 G 4 D G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 C 9 C C 9 1_555 D O6 G 4 D G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 C 9 C C 9 1_555 D N2 G 4 D G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog25 C O6 G 10 C G 10 1_555 D N6 A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N1 G 10 C G 10 1_555 D N3 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N2 G 10 C G 10 1_555 D O2 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O6 G 10 C G 10 1_555 D N4 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N3 U 11 C U 11 1_555 D N1 A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O4 U 11 C U 11 1_555 D N6 A 2 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 C 12 C C 12 1_555 D N1 GDP 1 D GDP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N4 C 12 C C 12 1_555 D O6 GDP 1 D GDP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O2 C 12 C C 12 1_555 D N2 GDP 1 D GDP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NCU _atom_sites.fract_transf_matrix[1][1] 0.011982 _atom_sites.fract_transf_matrix[1][2] 0.006918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1 1 ZN ZN . F 3 ZN B 1 2 2 ZN ZN . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 4 4 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 8 8 HOH HOH . G 4 HOH A 6 9 9 HOH HOH . G 4 HOH A 7 11 11 HOH HOH . G 4 HOH A 8 15 15 HOH HOH . G 4 HOH A 9 17 17 HOH HOH . G 4 HOH A 10 23 23 HOH HOH . G 4 HOH A 11 24 24 HOH HOH . G 4 HOH A 12 25 25 HOH HOH . G 4 HOH A 13 27 27 HOH HOH . G 4 HOH A 14 29 29 HOH HOH . G 4 HOH A 15 32 32 HOH HOH . G 4 HOH A 16 35 35 HOH HOH . G 4 HOH A 17 36 36 HOH HOH . G 4 HOH A 18 37 37 HOH HOH . G 4 HOH A 19 38 38 HOH HOH . G 4 HOH A 20 39 39 HOH HOH . G 4 HOH A 21 41 41 HOH HOH . G 4 HOH A 22 43 43 HOH HOH . G 4 HOH A 23 49 49 HOH HOH . G 4 HOH A 24 51 51 HOH HOH . G 4 HOH A 25 53 53 HOH HOH . G 4 HOH A 26 54 54 HOH HOH . G 4 HOH A 27 55 55 HOH HOH . G 4 HOH A 28 56 56 HOH HOH . G 4 HOH A 29 59 59 HOH HOH . G 4 HOH A 30 63 63 HOH HOH . G 4 HOH A 31 66 66 HOH HOH . G 4 HOH A 32 70 70 HOH HOH . G 4 HOH A 33 72 72 HOH HOH . G 4 HOH A 34 75 75 HOH HOH . G 4 HOH A 35 78 78 HOH HOH . G 4 HOH A 36 80 80 HOH HOH . G 4 HOH A 37 81 81 HOH HOH . G 4 HOH A 38 84 84 HOH HOH . G 4 HOH A 39 86 86 HOH HOH . G 4 HOH A 40 94 94 HOH HOH . G 4 HOH A 41 96 96 HOH HOH . G 4 HOH A 42 99 99 HOH HOH . G 4 HOH A 43 100 100 HOH HOH . G 4 HOH A 44 101 101 HOH HOH . G 4 HOH A 45 105 105 HOH HOH . G 4 HOH A 46 107 107 HOH HOH . G 4 HOH A 47 108 108 HOH HOH . G 4 HOH A 48 109 109 HOH HOH . G 4 HOH A 49 926 1 HOH HOH . H 4 HOH B 1 7 7 HOH HOH . H 4 HOH B 2 10 10 HOH HOH . H 4 HOH B 3 12 12 HOH HOH . H 4 HOH B 4 14 14 HOH HOH . H 4 HOH B 5 16 16 HOH HOH . H 4 HOH B 6 19 19 HOH HOH . H 4 HOH B 7 21 21 HOH HOH . H 4 HOH B 8 22 22 HOH HOH . H 4 HOH B 9 26 26 HOH HOH . H 4 HOH B 10 28 28 HOH HOH . H 4 HOH B 11 30 30 HOH HOH . H 4 HOH B 12 31 31 HOH HOH . H 4 HOH B 13 33 33 HOH HOH . H 4 HOH B 14 34 34 HOH HOH . H 4 HOH B 15 42 42 HOH HOH . H 4 HOH B 16 44 44 HOH HOH . H 4 HOH B 17 45 45 HOH HOH . H 4 HOH B 18 46 46 HOH HOH . H 4 HOH B 19 47 47 HOH HOH . H 4 HOH B 20 48 48 HOH HOH . H 4 HOH B 21 50 50 HOH HOH . H 4 HOH B 22 52 52 HOH HOH . H 4 HOH B 23 58 58 HOH HOH . H 4 HOH B 24 60 60 HOH HOH . H 4 HOH B 25 61 61 HOH HOH . H 4 HOH B 26 62 62 HOH HOH . H 4 HOH B 27 64 64 HOH HOH . H 4 HOH B 28 65 65 HOH HOH . H 4 HOH B 29 69 69 HOH HOH . H 4 HOH B 30 71 71 HOH HOH . H 4 HOH B 31 73 73 HOH HOH . H 4 HOH B 32 74 74 HOH HOH . H 4 HOH B 33 76 76 HOH HOH . H 4 HOH B 34 79 79 HOH HOH . H 4 HOH B 35 83 83 HOH HOH . H 4 HOH B 36 85 85 HOH HOH . H 4 HOH B 37 87 87 HOH HOH . H 4 HOH B 38 88 88 HOH HOH . H 4 HOH B 39 89 89 HOH HOH . H 4 HOH B 40 90 90 HOH HOH . H 4 HOH B 41 91 91 HOH HOH . H 4 HOH B 42 92 92 HOH HOH . H 4 HOH B 43 93 93 HOH HOH . H 4 HOH B 44 95 95 HOH HOH . H 4 HOH B 45 97 97 HOH HOH . I 4 HOH C 1 13 5 HOH HOH . I 4 HOH C 2 68 68 HOH HOH . I 4 HOH C 3 82 82 HOH HOH . I 4 HOH C 4 98 98 HOH HOH . J 4 HOH D 1 20 20 HOH HOH . J 4 HOH D 2 40 40 HOH HOH . J 4 HOH D 3 57 57 HOH HOH . J 4 HOH D 4 106 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.953 _atom_site.Cartn_y -34.835 _atom_site.Cartn_z 7.954 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #