data_3ND9 # _model_server_result.job_id ek_e-esU-3bb6ZHkMIJ1XQ _model_server_result.datetime_utc '2024-10-18 15:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":589}' # _entry.id 3ND9 # _exptl.entry_id 3ND9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ND9 _cell.length_a 128.381 _cell.length_b 128.381 _cell.length_c 105.057 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ND9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 237 n n C1 H1C1 MRD sing 238 n n C1 H1C2 MRD sing 239 n n C1 H1C3 MRD sing 240 n n C2 O2 MRD sing 241 n n C2 CM MRD sing 242 n n C2 C3 MRD sing 243 n n O2 H2 MRD sing 244 n n CM HMC1 MRD sing 245 n n CM HMC2 MRD sing 246 n n CM HMC3 MRD sing 247 n n C3 C4 MRD sing 248 n n C3 H3C1 MRD sing 249 n n C3 H3C2 MRD sing 250 n n C4 O4 MRD sing 251 n n C4 C5 MRD sing 252 n n C4 H4 MRD sing 253 n n O4 HA MRD sing 254 n n C5 H5C1 MRD sing 255 n n C5 H5C2 MRD sing 256 n n C5 H5C3 MRD sing 257 n n # _atom_sites.entry_id 3ND9 _atom_sites.fract_transf_matrix[1][1] 0.007789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD A 1 589 1 MRD MPD . C 2 MRD A 1 590 1 MRD MPD . D 3 HOH A 1 591 1 HOH HOH . D 3 HOH A 2 592 2 HOH HOH . D 3 HOH A 3 593 3 HOH HOH . D 3 HOH A 4 594 4 HOH HOH . D 3 HOH A 5 595 5 HOH HOH . D 3 HOH A 6 596 6 HOH HOH . D 3 HOH A 7 597 7 HOH HOH . D 3 HOH A 8 598 9 HOH HOH . D 3 HOH A 9 599 10 HOH HOH . D 3 HOH A 10 600 11 HOH HOH . D 3 HOH A 11 601 12 HOH HOH . D 3 HOH A 12 602 13 HOH HOH . D 3 HOH A 13 603 14 HOH HOH . D 3 HOH A 14 604 15 HOH HOH . D 3 HOH A 15 605 16 HOH HOH . D 3 HOH A 16 606 17 HOH HOH . D 3 HOH A 17 607 18 HOH HOH . D 3 HOH A 18 608 19 HOH HOH . D 3 HOH A 19 609 20 HOH HOH . D 3 HOH A 20 610 21 HOH HOH . D 3 HOH A 21 611 22 HOH HOH . D 3 HOH A 22 612 23 HOH HOH . D 3 HOH A 23 613 24 HOH HOH . D 3 HOH A 24 614 25 HOH HOH . D 3 HOH A 25 615 27 HOH HOH . D 3 HOH A 26 616 28 HOH HOH . D 3 HOH A 27 617 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . B 2 42.803 -1.081 13.187 1 81.82 ? C1 MRD 589 A 1 HETATM 2 C C2 MRD . . . B 2 43.409 0.001 14.081 1 80.55 ? C2 MRD 589 A 1 HETATM 3 O O2 MRD . . . B 2 44.444 0.665 13.323 1 80.15 ? O2 MRD 589 A 1 HETATM 4 C CM MRD . . . B 2 42.382 1.078 14.424 1 79.52 ? CM MRD 589 A 1 HETATM 5 C C3 MRD . . . B 2 44.037 -0.703 15.284 1 79.74 ? C3 MRD 589 A 1 HETATM 6 C C4 MRD . . . B 2 43.492 -0.264 16.635 1 80.93 ? C4 MRD 589 A 1 HETATM 7 O O4 MRD . . . B 2 44.443 -0.628 17.608 1 80.88 ? O4 MRD 589 A 1 HETATM 8 C C5 MRD . . . B 2 42.136 -0.89 16.985 1 82.34 ? C5 MRD 589 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #