data_3NDG
#
_model_server_result.job_id            pQnixZnjptnIawajXLckNA 
_model_server_result.datetime_utc      '2024-10-11 11:23:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ndg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3}' 
#
_entry.id    3NDG 
#
_exptl.entry_id    3NDG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NDG 
_cell.length_a            49.355 
_cell.length_b            67.908 
_cell.length_c            75.569 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NDG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            7EP 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             7EP 
_struct_conn.ptnr1_auth_seq_id              1 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            OG 
_struct_conn.ptnr2_label_comp_id            SER 
_struct_conn.ptnr2_label_seq_id             42 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             SER 
_struct_conn.ptnr2_auth_seq_id              84 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.326 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 309 n n 
P O2 PO4 sing 310 n n 
P O3 PO4 sing 311 n n 
P O4 PO4 sing 312 n n 
#
_atom_sites.entry_id                     3NDG 
_atom_sites.fract_transf_matrix[1][1]    0.020261 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 2 2 PO4 PO4 . 
C 2 PO4 A 1 3 3 PO4 PO4 . 
D 3 7EP A 1 1 1 7EP 7EP . 
E 4 HOH A 1 4 4 HOH HOH . 
E 4 HOH A 2 5 5 HOH HOH . 
E 4 HOH A 3 6 6 HOH HOH . 
E 4 HOH A 4 7 7 HOH HOH . 
E 4 HOH A 5 8 8 HOH HOH . 
E 4 HOH A 6 9 9 HOH HOH . 
E 4 HOH A 7 10 10 HOH HOH . 
E 4 HOH A 8 11 11 HOH HOH . 
E 4 HOH A 9 12 12 HOH HOH . 
E 4 HOH A 10 13 13 HOH HOH . 
E 4 HOH A 11 14 14 HOH HOH . 
E 4 HOH A 12 15 15 HOH HOH . 
E 4 HOH A 13 16 16 HOH HOH . 
E 4 HOH A 14 17 17 HOH HOH . 
E 4 HOH A 15 18 18 HOH HOH . 
E 4 HOH A 16 19 19 HOH HOH . 
E 4 HOH A 17 20 20 HOH HOH . 
E 4 HOH A 18 21 21 HOH HOH . 
E 4 HOH A 19 22 22 HOH HOH . 
E 4 HOH A 20 23 23 HOH HOH . 
E 4 HOH A 21 24 24 HOH HOH . 
E 4 HOH A 22 25 25 HOH HOH . 
E 4 HOH A 23 26 26 HOH HOH . 
E 4 HOH A 24 27 27 HOH HOH . 
E 4 HOH A 25 28 28 HOH HOH . 
E 4 HOH A 26 29 29 HOH HOH . 
E 4 HOH A 27 30 30 HOH HOH . 
E 4 HOH A 28 31 31 HOH HOH . 
E 4 HOH A 29 32 32 HOH HOH . 
E 4 HOH A 30 33 33 HOH HOH . 
E 4 HOH A 31 34 34 HOH HOH . 
E 4 HOH A 32 35 35 HOH HOH . 
E 4 HOH A 33 36 36 HOH HOH . 
E 4 HOH A 34 37 37 HOH HOH . 
E 4 HOH A 35 38 38 HOH HOH . 
E 4 HOH A 36 39 39 HOH HOH . 
E 4 HOH A 37 40 40 HOH HOH . 
E 4 HOH A 38 41 41 HOH HOH . 
E 4 HOH A 39 42 42 HOH HOH . 
E 4 HOH A 40 308 1 HOH HOH . 
E 4 HOH A 41 309 2 HOH HOH . 
E 4 HOH A 42 310 3 HOH HOH . 
E 4 HOH A 43 311 43 HOH HOH . 
E 4 HOH A 44 312 44 HOH HOH . 
E 4 HOH A 45 313 45 HOH HOH . 
E 4 HOH A 46 314 46 HOH HOH . 
E 4 HOH A 47 315 47 HOH HOH . 
E 4 HOH A 48 316 48 HOH HOH . 
E 4 HOH A 49 317 49 HOH HOH . 
E 4 HOH A 50 318 50 HOH HOH . 
E 4 HOH A 51 319 51 HOH HOH . 
E 4 HOH A 52 320 52 HOH HOH . 
E 4 HOH A 53 321 53 HOH HOH . 
E 4 HOH A 54 322 54 HOH HOH . 
E 4 HOH A 55 323 55 HOH HOH . 
E 4 HOH A 56 324 56 HOH HOH . 
E 4 HOH A 57 325 57 HOH HOH . 
E 4 HOH A 58 326 58 HOH HOH . 
E 4 HOH A 59 327 59 HOH HOH . 
E 4 HOH A 60 328 60 HOH HOH . 
E 4 HOH A 61 329 61 HOH HOH . 
E 4 HOH A 62 330 62 HOH HOH . 
E 4 HOH A 63 331 63 HOH HOH . 
E 4 HOH A 64 332 65 HOH HOH . 
E 4 HOH A 65 333 66 HOH HOH . 
E 4 HOH A 66 334 67 HOH HOH . 
E 4 HOH A 67 335 68 HOH HOH . 
E 4 HOH A 68 336 69 HOH HOH . 
E 4 HOH A 69 337 70 HOH HOH . 
E 4 HOH A 70 338 71 HOH HOH . 
E 4 HOH A 71 339 72 HOH HOH . 
E 4 HOH A 72 340 73 HOH HOH . 
E 4 HOH A 73 341 74 HOH HOH . 
E 4 HOH A 74 342 75 HOH HOH . 
E 4 HOH A 75 343 76 HOH HOH . 
E 4 HOH A 76 344 77 HOH HOH . 
E 4 HOH A 77 345 78 HOH HOH . 
E 4 HOH A 78 346 80 HOH HOH . 
E 4 HOH A 79 347 81 HOH HOH . 
E 4 HOH A 80 348 82 HOH HOH . 
E 4 HOH A 81 349 83 HOH HOH . 
E 4 HOH A 82 350 84 HOH HOH . 
E 4 HOH A 83 351 85 HOH HOH . 
E 4 HOH A 84 352 86 HOH HOH . 
E 4 HOH A 85 353 87 HOH HOH . 
E 4 HOH A 86 354 88 HOH HOH . 
E 4 HOH A 87 355 89 HOH HOH . 
E 4 HOH A 88 356 90 HOH HOH . 
E 4 HOH A 89 357 91 HOH HOH . 
E 4 HOH A 90 358 92 HOH HOH . 
E 4 HOH A 91 359 93 HOH HOH . 
E 4 HOH A 92 360 94 HOH HOH . 
E 4 HOH A 93 361 95 HOH HOH . 
E 4 HOH A 94 362 96 HOH HOH . 
E 4 HOH A 95 363 97 HOH HOH . 
E 4 HOH A 96 364 98 HOH HOH . 
E 4 HOH A 97 365 99 HOH HOH . 
E 4 HOH A 98 366 100 HOH HOH . 
E 4 HOH A 99 367 101 HOH HOH . 
E 4 HOH A 100 368 102 HOH HOH . 
E 4 HOH A 101 369 103 HOH HOH . 
E 4 HOH A 102 370 104 HOH HOH . 
E 4 HOH A 103 371 105 HOH HOH . 
E 4 HOH A 104 372 106 HOH HOH . 
E 4 HOH A 105 373 107 HOH HOH . 
E 4 HOH A 106 374 108 HOH HOH . 
E 4 HOH A 107 375 109 HOH HOH . 
E 4 HOH A 108 376 110 HOH HOH . 
E 4 HOH A 109 377 111 HOH HOH . 
E 4 HOH A 110 378 112 HOH HOH . 
E 4 HOH A 111 379 113 HOH HOH . 
E 4 HOH A 112 380 114 HOH HOH . 
E 4 HOH A 113 381 115 HOH HOH . 
E 4 HOH A 114 382 116 HOH HOH . 
E 4 HOH A 115 383 117 HOH HOH . 
E 4 HOH A 116 384 118 HOH HOH . 
E 4 HOH A 117 385 119 HOH HOH . 
E 4 HOH A 118 386 120 HOH HOH . 
E 4 HOH A 119 387 121 HOH HOH . 
E 4 HOH A 120 388 122 HOH HOH . 
E 4 HOH A 121 389 123 HOH HOH . 
E 4 HOH A 122 390 124 HOH HOH . 
E 4 HOH A 123 391 125 HOH HOH . 
E 4 HOH A 124 392 126 HOH HOH . 
E 4 HOH A 125 393 127 HOH HOH . 
E 4 HOH A 126 394 128 HOH HOH . 
E 4 HOH A 127 395 129 HOH HOH . 
E 4 HOH A 128 396 130 HOH HOH . 
E 4 HOH A 129 397 131 HOH HOH . 
E 4 HOH A 130 398 132 HOH HOH . 
E 4 HOH A 131 399 133 HOH HOH . 
E 4 HOH A 132 400 134 HOH HOH . 
E 4 HOH A 133 401 135 HOH HOH . 
E 4 HOH A 134 402 136 HOH HOH . 
E 4 HOH A 135 403 137 HOH HOH . 
E 4 HOH A 136 404 138 HOH HOH . 
E 4 HOH A 137 405 139 HOH HOH . 
E 4 HOH A 138 406 140 HOH HOH . 
E 4 HOH A 139 407 141 HOH HOH . 
E 4 HOH A 140 408 142 HOH HOH . 
E 4 HOH A 141 409 143 HOH HOH . 
E 4 HOH A 142 410 144 HOH HOH . 
E 4 HOH A 143 411 145 HOH HOH . 
E 4 HOH A 144 412 146 HOH HOH . 
E 4 HOH A 145 413 147 HOH HOH . 
E 4 HOH A 146 414 148 HOH HOH . 
E 4 HOH A 147 415 149 HOH HOH . 
E 4 HOH A 148 416 150 HOH HOH . 
E 4 HOH A 149 417 151 HOH HOH . 
E 4 HOH A 150 418 152 HOH HOH . 
E 4 HOH A 151 419 153 HOH HOH . 
E 4 HOH A 152 420 154 HOH HOH . 
E 4 HOH A 153 421 155 HOH HOH . 
E 4 HOH A 154 422 156 HOH HOH . 
E 4 HOH A 155 423 157 HOH HOH . 
E 4 HOH A 156 424 158 HOH HOH . 
E 4 HOH A 157 425 159 HOH HOH . 
E 4 HOH A 158 426 160 HOH HOH . 
E 4 HOH A 159 427 161 HOH HOH . 
E 4 HOH A 160 428 162 HOH HOH . 
E 4 HOH A 161 429 163 HOH HOH . 
E 4 HOH A 162 430 164 HOH HOH . 
E 4 HOH A 163 431 165 HOH HOH . 
E 4 HOH A 164 432 166 HOH HOH . 
E 4 HOH A 165 433 167 HOH HOH . 
E 4 HOH A 166 434 168 HOH HOH . 
E 4 HOH A 167 435 169 HOH HOH . 
E 4 HOH A 168 436 171 HOH HOH . 
E 4 HOH A 169 437 172 HOH HOH . 
E 4 HOH A 170 438 173 HOH HOH . 
E 4 HOH A 171 439 174 HOH HOH . 
E 4 HOH A 172 440 175 HOH HOH . 
E 4 HOH A 173 441 176 HOH HOH . 
E 4 HOH A 174 442 177 HOH HOH . 
E 4 HOH A 175 443 178 HOH HOH . 
E 4 HOH A 176 444 179 HOH HOH . 
E 4 HOH A 177 445 180 HOH HOH . 
E 4 HOH A 178 446 181 HOH HOH . 
E 4 HOH A 179 447 182 HOH HOH . 
E 4 HOH A 180 448 183 HOH HOH . 
E 4 HOH A 181 449 184 HOH HOH . 
E 4 HOH A 182 450 185 HOH HOH . 
E 4 HOH A 183 451 186 HOH HOH . 
E 4 HOH A 184 452 187 HOH HOH . 
E 4 HOH A 185 453 189 HOH HOH . 
E 4 HOH A 186 454 190 HOH HOH . 
E 4 HOH A 187 455 191 HOH HOH . 
E 4 HOH A 188 456 192 HOH HOH . 
E 4 HOH A 189 457 193 HOH HOH . 
E 4 HOH A 190 458 194 HOH HOH . 
E 4 HOH A 191 459 195 HOH HOH . 
E 4 HOH A 192 460 196 HOH HOH . 
E 4 HOH A 193 461 197 HOH HOH . 
E 4 HOH A 194 462 198 HOH HOH . 
E 4 HOH A 195 463 200 HOH HOH . 
E 4 HOH A 196 464 201 HOH HOH . 
E 4 HOH A 197 465 202 HOH HOH . 
E 4 HOH A 198 466 203 HOH HOH . 
E 4 HOH A 199 467 204 HOH HOH . 
E 4 HOH A 200 468 205 HOH HOH . 
E 4 HOH A 201 469 206 HOH HOH . 
E 4 HOH A 202 470 207 HOH HOH . 
E 4 HOH A 203 471 208 HOH HOH . 
E 4 HOH A 204 472 209 HOH HOH . 
E 4 HOH A 205 473 210 HOH HOH . 
E 4 HOH A 206 474 211 HOH HOH . 
E 4 HOH A 207 475 212 HOH HOH . 
E 4 HOH A 208 476 213 HOH HOH . 
E 4 HOH A 209 477 214 HOH HOH . 
E 4 HOH A 210 478 215 HOH HOH . 
E 4 HOH A 211 479 216 HOH HOH . 
E 4 HOH A 212 480 217 HOH HOH . 
E 4 HOH A 213 481 218 HOH HOH . 
E 4 HOH A 214 482 219 HOH HOH . 
E 4 HOH A 215 483 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 2 -33.293 -16.161 1.627 1 44.63 ? P PO4 3 A 1 
HETATM 2 O O1 PO4 . . . C 2 -32.305 -15.091 1.2 1 42.71 ? O1 PO4 3 A 1 
HETATM 3 O O2 PO4 . . . C 2 -34.683 -15.708 1.218 1 42.03 ? O2 PO4 3 A 1 
HETATM 4 O O3 PO4 . . . C 2 -32.94 -17.453 0.931 1 44.44 ? O3 PO4 3 A 1 
HETATM 5 O O4 PO4 . . . C 2 -33.227 -16.41 3.117 1 40.8 ? O4 PO4 3 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#