data_3NDM # _model_server_result.job_id xz89nMUaoDqZRCZ-xqnYpw _model_server_result.datetime_utc '2025-02-05 19:10:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ndm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":900}' # _entry.id 3NDM # _exptl.entry_id 3NDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4R)-N-(7-chloro-1-oxo-1,4-dihydroisoquinolin-6-yl)-4-(4-chlorophenyl)pyrrolidine-3-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.95 _cell.angle_gamma 90 _cell.entry_id 3NDM _cell.length_a 162.784 _cell.length_b 83.553 _cell.length_c 177.962 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C20 H17 Cl2 N3 O2' _chem_comp.formula_weight 402.274 _chem_comp.id 3ND _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4R)-N-(7-chloro-1-oxo-1,4-dihydroisoquinolin-6-yl)-4-(4-chlorophenyl)pyrrolidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 3ND doub 1 n n C4 C1 3ND sing 2 n n C1 H1 3ND sing 3 n n C3 N2 3ND sing 4 n n O25 C3 3ND doub 5 n n C6 C3 3ND sing 6 n n C5 C4 3ND sing 7 n n C4 H4 3ND sing 8 n n C4 H4A 3ND sing 9 n n C6 C5 3ND doub 10 n y C10 C5 3ND sing 11 n y C7 C6 3ND sing 12 n y C8 C7 3ND doub 13 n y C7 H7 3ND sing 14 n n CL26 C8 3ND sing 15 n n C8 C9 3ND sing 16 n y N11 C9 3ND sing 17 n n C9 C10 3ND doub 18 n y C10 H10 3ND sing 19 n n C12 N11 3ND sing 20 n n N11 HN11 3ND sing 21 n n O27 C12 3ND doub 22 n n C13 C12 3ND sing 23 n n C14 C13 3ND sing 24 n n C13 C17 3ND sing 25 n n C13 H13 3ND sing 26 n n N15 C14 3ND sing 27 n n C14 H14 3ND sing 28 n n C14 H14A 3ND sing 29 n n N15 C16 3ND sing 30 n n N15 HN15 3ND sing 31 n n C16 C17 3ND sing 32 n n C16 H16 3ND sing 33 n n C16 H16A 3ND sing 34 n n C17 C18 3ND sing 35 n n C17 H17 3ND sing 36 n n C18 C19 3ND doub 37 n y C18 C23 3ND sing 38 n y C19 C20 3ND sing 39 n y C19 H19 3ND sing 40 n n C20 C21 3ND doub 41 n y C20 H20 3ND sing 42 n n C22 C21 3ND sing 43 n y C21 CL24 3ND sing 44 n n C23 C22 3ND doub 45 n y C22 H22 3ND sing 46 n n C23 H23 3ND sing 47 n n # _atom_sites.entry_id 3NDM _atom_sites.fract_transf_matrix[1][1] 0.006143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00354 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3ND B 1 900 900 3ND 3ND . F 2 3ND C 1 900 900 3ND 3ND . G 2 3ND D 1 900 900 3ND 3ND . H 3 HOH A 1 416 416 HOH HOH . H 3 HOH A 2 417 417 HOH HOH . H 3 HOH A 3 418 418 HOH HOH . H 3 HOH A 4 419 419 HOH HOH . H 3 HOH A 5 420 420 HOH HOH . H 3 HOH A 6 421 421 HOH HOH . H 3 HOH A 7 422 422 HOH HOH . H 3 HOH A 8 423 423 HOH HOH . H 3 HOH A 9 424 424 HOH HOH . H 3 HOH A 10 425 425 HOH HOH . H 3 HOH A 11 426 426 HOH HOH . H 3 HOH A 12 427 427 HOH HOH . H 3 HOH A 13 428 428 HOH HOH . H 3 HOH A 14 429 429 HOH HOH . H 3 HOH A 15 430 430 HOH HOH . H 3 HOH A 16 431 431 HOH HOH . H 3 HOH A 17 432 432 HOH HOH . H 3 HOH A 18 433 433 HOH HOH . H 3 HOH A 19 434 434 HOH HOH . H 3 HOH A 20 435 435 HOH HOH . I 3 HOH B 1 416 416 HOH HOH . I 3 HOH B 2 417 417 HOH HOH . I 3 HOH B 3 418 418 HOH HOH . I 3 HOH B 4 419 419 HOH HOH . I 3 HOH B 5 420 420 HOH HOH . I 3 HOH B 6 421 421 HOH HOH . I 3 HOH B 7 422 422 HOH HOH . I 3 HOH B 8 423 423 HOH HOH . I 3 HOH B 9 424 424 HOH HOH . I 3 HOH B 10 425 425 HOH HOH . I 3 HOH B 11 426 426 HOH HOH . I 3 HOH B 12 427 427 HOH HOH . I 3 HOH B 13 428 428 HOH HOH . I 3 HOH B 14 429 429 HOH HOH . I 3 HOH B 15 430 430 HOH HOH . I 3 HOH B 16 431 431 HOH HOH . J 3 HOH C 1 416 416 HOH HOH . J 3 HOH C 2 417 417 HOH HOH . J 3 HOH C 3 418 418 HOH HOH . J 3 HOH C 4 419 419 HOH HOH . J 3 HOH C 5 420 420 HOH HOH . J 3 HOH C 6 421 421 HOH HOH . J 3 HOH C 7 422 422 HOH HOH . J 3 HOH C 8 423 423 HOH HOH . J 3 HOH C 9 424 424 HOH HOH . J 3 HOH C 10 425 425 HOH HOH . J 3 HOH C 11 426 426 HOH HOH . J 3 HOH C 12 427 427 HOH HOH . J 3 HOH C 13 428 428 HOH HOH . J 3 HOH C 14 429 429 HOH HOH . J 3 HOH C 15 430 430 HOH HOH . K 3 HOH D 1 416 416 HOH HOH . K 3 HOH D 2 417 417 HOH HOH . K 3 HOH D 3 418 418 HOH HOH . K 3 HOH D 4 419 419 HOH HOH . K 3 HOH D 5 420 420 HOH HOH . K 3 HOH D 6 421 421 HOH HOH . K 3 HOH D 7 422 422 HOH HOH . K 3 HOH D 8 423 423 HOH HOH . K 3 HOH D 9 424 424 HOH HOH . K 3 HOH D 10 425 425 HOH HOH . K 3 HOH D 11 426 426 HOH HOH . K 3 HOH D 12 427 427 HOH HOH . K 3 HOH D 13 428 428 HOH HOH . K 3 HOH D 14 429 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3ND . . . F 2 -24.862 24.112 26.442 1 138.86 ? C1 3ND 900 C 1 HETATM 2 N N2 3ND . . . F 2 -25.937 24.854 26.091 1 138.86 ? N2 3ND 900 C 1 HETATM 3 C C3 3ND . . . F 2 -26.984 24.288 25.497 1 138.86 ? C3 3ND 900 C 1 HETATM 4 C C4 3ND . . . F 2 -24.778 22.794 26.23 1 138.86 ? C4 3ND 900 C 1 HETATM 5 C C5 3ND . . . F 2 -25.882 22.091 25.588 1 138.86 ? C5 3ND 900 C 1 HETATM 6 C C6 3ND . . . F 2 -27.001 22.854 25.217 1 138.86 ? C6 3ND 900 C 1 HETATM 7 C C7 3ND . . . F 2 -28.076 22.215 24.61 1 138.86 ? C7 3ND 900 C 1 HETATM 8 C C8 3ND . . . F 2 -28.014 20.864 24.391 1 138.86 ? C8 3ND 900 C 1 HETATM 9 C C9 3ND . . . F 2 -26.922 20.093 24.749 1 138.86 ? C9 3ND 900 C 1 HETATM 10 C C10 3ND . . . F 2 -25.843 20.71 25.351 1 138.86 ? C10 3ND 900 C 1 HETATM 11 N N11 3ND . . . F 2 -26.981 18.722 24.464 1 138.86 ? N11 3ND 900 C 1 HETATM 12 C C12 3ND . . . F 2 -26.153 18.129 23.577 1 138.86 ? C12 3ND 900 C 1 HETATM 13 C C13 3ND . . . F 2 -26.26 16.648 23.287 1 138.86 ? C13 3ND 900 C 1 HETATM 14 C C14 3ND . . . F 2 -26.036 16.298 21.785 1 138.86 ? C14 3ND 900 C 1 HETATM 15 N N15 3ND . . . F 2 -27.235 15.505 21.329 1 138.86 ? N15 3ND 900 C 1 HETATM 16 C C16 3ND . . . F 2 -27.857 14.974 22.583 1 138.86 ? C16 3ND 900 C 1 HETATM 17 C C17 3ND . . . F 2 -27.678 16.143 23.581 1 138.86 ? C17 3ND 900 C 1 HETATM 18 C C18 3ND . . . F 2 -27.579 15.701 24.997 1 138.86 ? C18 3ND 900 C 1 HETATM 19 C C19 3ND . . . F 2 -26.438 15.028 25.387 1 138.86 ? C19 3ND 900 C 1 HETATM 20 C C20 3ND . . . F 2 -26.301 14.623 26.702 1 138.86 ? C20 3ND 900 C 1 HETATM 21 C C21 3ND . . . F 2 -27.307 14.903 27.618 1 138.86 ? C21 3ND 900 C 1 HETATM 22 C C22 3ND . . . F 2 -28.454 15.589 27.223 1 138.86 ? C22 3ND 900 C 1 HETATM 23 C C23 3ND . . . F 2 -28.587 15.995 25.898 1 138.86 ? C23 3ND 900 C 1 HETATM 24 CL CL24 3ND . . . F 2 -27.131 14.391 29.264 1 138.86 ? CL24 3ND 900 C 1 HETATM 25 O O25 3ND . . . F 2 -27.914 24.997 25.202 1 138.86 ? O25 3ND 900 C 1 HETATM 26 CL CL26 3ND . . . F 2 -29.323 20.026 23.642 1 138.86 ? CL26 3ND 900 C 1 HETATM 27 O O27 3ND . . . F 2 -25.315 18.777 22.998 1 138.86 ? O27 3ND 900 C 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 110 _model_server_stats.create_model_time_ms 180 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #