data_3NDP
#
_model_server_result.job_id            1YUaZuUqVx-jSaZhRueW0w 
_model_server_result.datetime_utc      '2024-11-21 23:18:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ndp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1504}' 
#
_entry.id    3NDP 
#
_exptl.entry_id    3NDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NDP 
_cell.length_a            77.79 
_cell.length_b            77.79 
_cell.length_c            144.64 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 77.79 77.79 72.32 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 290 n n 
S O2 SO4 doub 291 n n 
S O3 SO4 sing 292 n n 
S O4 SO4 sing 293 n n 
#
_atom_sites.entry_id                     3NDP 
_atom_sites.fract_transf_matrix[1][1]    0.012855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 501 501 SO4 SO4 . 
D 2 SO4 A 1 502 502 SO4 SO4 . 
E 2 SO4 A 1 503 503 SO4 SO4 . 
F 2 SO4 A 1 504 504 SO4 SO4 . 
G 2 SO4 B 1 1501 1501 SO4 SO4 . 
H 2 SO4 B 1 1502 1502 SO4 SO4 . 
I 2 SO4 B 1 1503 1503 SO4 SO4 . 
J 2 SO4 B 1 1504 1504 SO4 SO4 . 
K 3 HOH A 1 232 232 HOH HOH . 
K 3 HOH A 2 233 3 HOH HOH . 
K 3 HOH A 3 234 234 HOH HOH . 
K 3 HOH A 4 235 4 HOH HOH . 
K 3 HOH A 5 236 236 HOH HOH . 
K 3 HOH A 6 237 5 HOH HOH . 
K 3 HOH A 7 238 238 HOH HOH . 
K 3 HOH A 8 239 6 HOH HOH . 
K 3 HOH A 9 240 8 HOH HOH . 
K 3 HOH A 10 241 10 HOH HOH . 
K 3 HOH A 11 242 242 HOH HOH . 
K 3 HOH A 12 243 243 HOH HOH . 
K 3 HOH A 13 244 11 HOH HOH . 
K 3 HOH A 14 245 12 HOH HOH . 
K 3 HOH A 15 246 246 HOH HOH . 
K 3 HOH A 16 247 247 HOH HOH . 
K 3 HOH A 17 248 248 HOH HOH . 
K 3 HOH A 18 249 13 HOH HOH . 
K 3 HOH A 19 250 250 HOH HOH . 
K 3 HOH A 20 251 251 HOH HOH . 
K 3 HOH A 21 252 252 HOH HOH . 
K 3 HOH A 22 253 253 HOH HOH . 
K 3 HOH A 23 254 254 HOH HOH . 
K 3 HOH A 24 255 255 HOH HOH . 
K 3 HOH A 25 256 14 HOH HOH . 
K 3 HOH A 26 257 257 HOH HOH . 
K 3 HOH A 27 258 258 HOH HOH . 
K 3 HOH A 28 259 15 HOH HOH . 
K 3 HOH A 29 260 260 HOH HOH . 
K 3 HOH A 30 261 261 HOH HOH . 
K 3 HOH A 31 262 262 HOH HOH . 
K 3 HOH A 32 263 16 HOH HOH . 
K 3 HOH A 33 264 17 HOH HOH . 
K 3 HOH A 34 265 265 HOH HOH . 
K 3 HOH A 35 266 19 HOH HOH . 
K 3 HOH A 36 267 267 HOH HOH . 
K 3 HOH A 37 268 268 HOH HOH . 
K 3 HOH A 38 269 20 HOH HOH . 
K 3 HOH A 39 270 270 HOH HOH . 
K 3 HOH A 40 271 271 HOH HOH . 
K 3 HOH A 41 272 272 HOH HOH . 
K 3 HOH A 42 273 21 HOH HOH . 
K 3 HOH A 43 274 274 HOH HOH . 
K 3 HOH A 44 275 275 HOH HOH . 
K 3 HOH A 45 276 23 HOH HOH . 
K 3 HOH A 46 277 277 HOH HOH . 
K 3 HOH A 47 278 24 HOH HOH . 
K 3 HOH A 48 279 26 HOH HOH . 
K 3 HOH A 49 280 29 HOH HOH . 
K 3 HOH A 50 281 281 HOH HOH . 
K 3 HOH A 51 282 36 HOH HOH . 
K 3 HOH A 52 283 39 HOH HOH . 
K 3 HOH A 53 284 40 HOH HOH . 
K 3 HOH A 54 285 42 HOH HOH . 
K 3 HOH A 55 286 43 HOH HOH . 
K 3 HOH A 56 287 44 HOH HOH . 
K 3 HOH A 57 288 47 HOH HOH . 
K 3 HOH A 58 289 49 HOH HOH . 
K 3 HOH A 59 290 50 HOH HOH . 
K 3 HOH A 60 291 51 HOH HOH . 
K 3 HOH A 61 292 52 HOH HOH . 
K 3 HOH A 62 293 55 HOH HOH . 
K 3 HOH A 63 294 56 HOH HOH . 
K 3 HOH A 64 295 57 HOH HOH . 
K 3 HOH A 65 296 59 HOH HOH . 
K 3 HOH A 66 297 60 HOH HOH . 
K 3 HOH A 67 298 61 HOH HOH . 
K 3 HOH A 68 299 62 HOH HOH . 
K 3 HOH A 69 300 63 HOH HOH . 
K 3 HOH A 70 301 64 HOH HOH . 
K 3 HOH A 71 302 65 HOH HOH . 
K 3 HOH A 72 303 66 HOH HOH . 
K 3 HOH A 73 304 68 HOH HOH . 
K 3 HOH A 74 305 69 HOH HOH . 
K 3 HOH A 75 306 70 HOH HOH . 
K 3 HOH A 76 307 71 HOH HOH . 
K 3 HOH A 77 308 72 HOH HOH . 
K 3 HOH A 78 309 73 HOH HOH . 
K 3 HOH A 79 310 76 HOH HOH . 
K 3 HOH A 80 311 77 HOH HOH . 
K 3 HOH A 81 312 80 HOH HOH . 
K 3 HOH A 82 313 83 HOH HOH . 
K 3 HOH A 83 314 84 HOH HOH . 
K 3 HOH A 84 315 85 HOH HOH . 
K 3 HOH A 85 316 86 HOH HOH . 
K 3 HOH A 86 317 87 HOH HOH . 
K 3 HOH A 87 318 88 HOH HOH . 
K 3 HOH A 88 319 91 HOH HOH . 
K 3 HOH A 89 320 92 HOH HOH . 
K 3 HOH A 90 321 95 HOH HOH . 
K 3 HOH A 91 322 96 HOH HOH . 
K 3 HOH A 92 323 99 HOH HOH . 
K 3 HOH A 93 324 101 HOH HOH . 
K 3 HOH A 94 325 108 HOH HOH . 
K 3 HOH A 95 326 110 HOH HOH . 
K 3 HOH A 96 327 114 HOH HOH . 
K 3 HOH A 97 328 116 HOH HOH . 
K 3 HOH A 98 329 117 HOH HOH . 
K 3 HOH A 99 330 119 HOH HOH . 
K 3 HOH A 100 331 121 HOH HOH . 
K 3 HOH A 101 332 122 HOH HOH . 
K 3 HOH A 102 333 125 HOH HOH . 
K 3 HOH A 103 334 127 HOH HOH . 
K 3 HOH A 104 335 129 HOH HOH . 
K 3 HOH A 105 336 130 HOH HOH . 
K 3 HOH A 106 337 131 HOH HOH . 
K 3 HOH A 107 338 132 HOH HOH . 
K 3 HOH A 108 339 134 HOH HOH . 
K 3 HOH A 109 340 136 HOH HOH . 
K 3 HOH A 110 341 137 HOH HOH . 
K 3 HOH A 111 342 138 HOH HOH . 
K 3 HOH A 112 343 139 HOH HOH . 
K 3 HOH A 113 344 141 HOH HOH . 
K 3 HOH A 114 345 143 HOH HOH . 
K 3 HOH A 115 346 145 HOH HOH . 
K 3 HOH A 116 347 146 HOH HOH . 
K 3 HOH A 117 348 147 HOH HOH . 
K 3 HOH A 118 349 148 HOH HOH . 
K 3 HOH A 119 350 149 HOH HOH . 
K 3 HOH A 120 351 151 HOH HOH . 
K 3 HOH A 121 352 152 HOH HOH . 
K 3 HOH A 122 353 154 HOH HOH . 
K 3 HOH A 123 354 155 HOH HOH . 
K 3 HOH A 124 355 157 HOH HOH . 
K 3 HOH A 125 356 159 HOH HOH . 
K 3 HOH A 126 357 160 HOH HOH . 
K 3 HOH A 127 358 162 HOH HOH . 
K 3 HOH A 128 359 163 HOH HOH . 
K 3 HOH A 129 360 165 HOH HOH . 
K 3 HOH A 130 361 167 HOH HOH . 
K 3 HOH A 131 362 168 HOH HOH . 
K 3 HOH A 132 363 170 HOH HOH . 
K 3 HOH A 133 364 173 HOH HOH . 
K 3 HOH A 134 365 174 HOH HOH . 
K 3 HOH A 135 366 175 HOH HOH . 
K 3 HOH A 136 367 177 HOH HOH . 
K 3 HOH A 137 368 180 HOH HOH . 
K 3 HOH A 138 369 181 HOH HOH . 
K 3 HOH A 139 370 182 HOH HOH . 
K 3 HOH A 140 371 183 HOH HOH . 
K 3 HOH A 141 372 185 HOH HOH . 
K 3 HOH A 142 373 187 HOH HOH . 
K 3 HOH A 143 374 188 HOH HOH . 
K 3 HOH A 144 375 189 HOH HOH . 
K 3 HOH A 145 376 191 HOH HOH . 
K 3 HOH A 146 377 193 HOH HOH . 
K 3 HOH A 147 378 195 HOH HOH . 
K 3 HOH A 148 379 196 HOH HOH . 
K 3 HOH A 149 380 197 HOH HOH . 
K 3 HOH A 150 381 201 HOH HOH . 
K 3 HOH A 151 382 203 HOH HOH . 
K 3 HOH A 152 383 205 HOH HOH . 
K 3 HOH A 153 384 207 HOH HOH . 
K 3 HOH A 154 385 208 HOH HOH . 
K 3 HOH A 155 386 209 HOH HOH . 
K 3 HOH A 156 387 212 HOH HOH . 
K 3 HOH A 157 388 213 HOH HOH . 
K 3 HOH A 158 389 215 HOH HOH . 
K 3 HOH A 159 390 217 HOH HOH . 
K 3 HOH A 160 391 218 HOH HOH . 
K 3 HOH A 161 392 219 HOH HOH . 
K 3 HOH A 162 393 220 HOH HOH . 
K 3 HOH A 163 394 221 HOH HOH . 
K 3 HOH A 164 395 222 HOH HOH . 
K 3 HOH A 165 396 224 HOH HOH . 
K 3 HOH A 166 397 225 HOH HOH . 
K 3 HOH A 167 398 226 HOH HOH . 
K 3 HOH A 168 399 227 HOH HOH . 
K 3 HOH A 169 400 228 HOH HOH . 
K 3 HOH A 170 401 229 HOH HOH . 
L 3 HOH B 1 232 1 HOH HOH . 
L 3 HOH B 2 233 233 HOH HOH . 
L 3 HOH B 3 234 2 HOH HOH . 
L 3 HOH B 4 235 235 HOH HOH . 
L 3 HOH B 5 236 7 HOH HOH . 
L 3 HOH B 6 237 237 HOH HOH . 
L 3 HOH B 7 238 9 HOH HOH . 
L 3 HOH B 8 239 239 HOH HOH . 
L 3 HOH B 9 240 240 HOH HOH . 
L 3 HOH B 10 241 241 HOH HOH . 
L 3 HOH B 11 242 18 HOH HOH . 
L 3 HOH B 12 243 22 HOH HOH . 
L 3 HOH B 13 244 244 HOH HOH . 
L 3 HOH B 14 245 245 HOH HOH . 
L 3 HOH B 15 246 25 HOH HOH . 
L 3 HOH B 16 247 27 HOH HOH . 
L 3 HOH B 17 248 28 HOH HOH . 
L 3 HOH B 18 249 249 HOH HOH . 
L 3 HOH B 19 250 30 HOH HOH . 
L 3 HOH B 20 251 31 HOH HOH . 
L 3 HOH B 21 252 32 HOH HOH . 
L 3 HOH B 22 253 33 HOH HOH . 
L 3 HOH B 23 254 34 HOH HOH . 
L 3 HOH B 24 255 35 HOH HOH . 
L 3 HOH B 25 256 256 HOH HOH . 
L 3 HOH B 26 257 37 HOH HOH . 
L 3 HOH B 27 258 38 HOH HOH . 
L 3 HOH B 28 259 259 HOH HOH . 
L 3 HOH B 29 260 41 HOH HOH . 
L 3 HOH B 30 261 45 HOH HOH . 
L 3 HOH B 31 262 46 HOH HOH . 
L 3 HOH B 32 263 263 HOH HOH . 
L 3 HOH B 33 264 264 HOH HOH . 
L 3 HOH B 34 265 48 HOH HOH . 
L 3 HOH B 35 266 266 HOH HOH . 
L 3 HOH B 36 267 53 HOH HOH . 
L 3 HOH B 37 268 54 HOH HOH . 
L 3 HOH B 38 269 269 HOH HOH . 
L 3 HOH B 39 270 58 HOH HOH . 
L 3 HOH B 40 271 67 HOH HOH . 
L 3 HOH B 41 272 74 HOH HOH . 
L 3 HOH B 42 273 273 HOH HOH . 
L 3 HOH B 43 274 75 HOH HOH . 
L 3 HOH B 44 275 78 HOH HOH . 
L 3 HOH B 45 276 276 HOH HOH . 
L 3 HOH B 46 277 79 HOH HOH . 
L 3 HOH B 47 278 278 HOH HOH . 
L 3 HOH B 48 279 279 HOH HOH . 
L 3 HOH B 49 280 280 HOH HOH . 
L 3 HOH B 50 281 81 HOH HOH . 
L 3 HOH B 51 282 282 HOH HOH . 
L 3 HOH B 52 283 82 HOH HOH . 
L 3 HOH B 53 284 89 HOH HOH . 
L 3 HOH B 54 285 90 HOH HOH . 
L 3 HOH B 55 286 93 HOH HOH . 
L 3 HOH B 56 287 94 HOH HOH . 
L 3 HOH B 57 288 97 HOH HOH . 
L 3 HOH B 58 289 98 HOH HOH . 
L 3 HOH B 59 290 100 HOH HOH . 
L 3 HOH B 60 291 102 HOH HOH . 
L 3 HOH B 61 292 103 HOH HOH . 
L 3 HOH B 62 293 104 HOH HOH . 
L 3 HOH B 63 294 105 HOH HOH . 
L 3 HOH B 64 295 106 HOH HOH . 
L 3 HOH B 65 296 107 HOH HOH . 
L 3 HOH B 66 297 109 HOH HOH . 
L 3 HOH B 67 298 111 HOH HOH . 
L 3 HOH B 68 299 112 HOH HOH . 
L 3 HOH B 69 300 113 HOH HOH . 
L 3 HOH B 70 301 115 HOH HOH . 
L 3 HOH B 71 302 118 HOH HOH . 
L 3 HOH B 72 303 120 HOH HOH . 
L 3 HOH B 73 304 123 HOH HOH . 
L 3 HOH B 74 305 124 HOH HOH . 
L 3 HOH B 75 306 126 HOH HOH . 
L 3 HOH B 76 307 128 HOH HOH . 
L 3 HOH B 77 308 133 HOH HOH . 
L 3 HOH B 78 309 135 HOH HOH . 
L 3 HOH B 79 310 140 HOH HOH . 
L 3 HOH B 80 311 142 HOH HOH . 
L 3 HOH B 81 312 144 HOH HOH . 
L 3 HOH B 82 313 150 HOH HOH . 
L 3 HOH B 83 314 153 HOH HOH . 
L 3 HOH B 84 315 156 HOH HOH . 
L 3 HOH B 85 316 158 HOH HOH . 
L 3 HOH B 86 317 161 HOH HOH . 
L 3 HOH B 87 318 164 HOH HOH . 
L 3 HOH B 88 319 166 HOH HOH . 
L 3 HOH B 89 320 169 HOH HOH . 
L 3 HOH B 90 321 171 HOH HOH . 
L 3 HOH B 91 322 172 HOH HOH . 
L 3 HOH B 92 323 176 HOH HOH . 
L 3 HOH B 93 324 178 HOH HOH . 
L 3 HOH B 94 325 179 HOH HOH . 
L 3 HOH B 95 326 184 HOH HOH . 
L 3 HOH B 96 327 186 HOH HOH . 
L 3 HOH B 97 328 190 HOH HOH . 
L 3 HOH B 98 329 192 HOH HOH . 
L 3 HOH B 99 330 194 HOH HOH . 
L 3 HOH B 100 331 198 HOH HOH . 
L 3 HOH B 101 332 199 HOH HOH . 
L 3 HOH B 102 333 200 HOH HOH . 
L 3 HOH B 103 334 202 HOH HOH . 
L 3 HOH B 104 335 204 HOH HOH . 
L 3 HOH B 105 336 206 HOH HOH . 
L 3 HOH B 106 337 210 HOH HOH . 
L 3 HOH B 107 338 211 HOH HOH . 
L 3 HOH B 108 339 214 HOH HOH . 
L 3 HOH B 109 340 216 HOH HOH . 
L 3 HOH B 110 341 223 HOH HOH . 
L 3 HOH B 111 342 230 HOH HOH . 
L 3 HOH B 112 343 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 2 78.627 -11.232 37.757 1 88.69 ? S SO4 1504 B 1 
HETATM 2 O O1 SO4 . . . J 2 78.126 -11.764 36.475 1 88.11 ? O1 SO4 1504 B 1 
HETATM 3 O O2 SO4 . . . J 2 80.104 -11.213 37.734 1 88.14 ? O2 SO4 1504 B 1 
HETATM 4 O O3 SO4 . . . J 2 78.121 -9.859 37.955 1 88.15 ? O3 SO4 1504 B 1 
HETATM 5 O O4 SO4 . . . J 2 78.163 -12.095 38.862 1 88.05 ? O4 SO4 1504 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#