data_3NDT
#
_model_server_result.job_id            UiOfFJYxOFbfwphgReMoTg 
_model_server_result.datetime_utc      '2024-11-18 19:19:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ndt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":101}' 
#
_entry.id    3NDT 
#
_exptl.entry_id    3NDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.32 
_cell.angle_gamma         90 
_cell.entry_id            3NDT 
_cell.length_a            51.294 
_cell.length_b            62.785 
_cell.length_c            59.171 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,T,U 1 1 
C,D,O,P,Q,R,S,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARF 1 A ARF 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 B C ARF 1 B ARF 1 1_555 B N PRO 2 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NDT 
_atom_sites.fract_transf_matrix[1][1]    0.019495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002851 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015927 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01708 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ROC A 1 101 2 ROC ROC . 
F 3 CL A 1 102 9 CL CL . 
G 4 DMS A 1 103 10 DMS DMS . 
H 4 DMS A 1 104 12 DMS DMS . 
I 5 NA B 1 101 1 NA NA . 
J 3 CL B 1 102 4 CL CL . 
K 3 CL B 1 103 5 CL CL . 
L 3 CL B 1 104 6 CL CL . 
M 3 CL B 1 105 7 CL CL . 
N 3 CL B 1 106 8 CL CL . 
O 5 NA C 1 100 2 NA NA . 
P 3 CL C 1 101 3 CL CL . 
Q 4 DMS C 1 102 11 DMS DMS . 
R 4 DMS C 1 103 13 DMS DMS . 
S 2 ROC D 1 100 1 ROC ROC . 
T 6 HOH A 1 106 3 HOH HOH . 
T 6 HOH A 2 107 6 HOH HOH . 
T 6 HOH A 3 108 15 HOH HOH . 
T 6 HOH A 4 109 17 HOH HOH . 
T 6 HOH A 5 110 18 HOH HOH . 
T 6 HOH A 6 111 22 HOH HOH . 
T 6 HOH A 7 112 24 HOH HOH . 
T 6 HOH A 8 113 25 HOH HOH . 
T 6 HOH A 9 114 30 HOH HOH . 
T 6 HOH A 10 115 40 HOH HOH . 
T 6 HOH A 11 116 43 HOH HOH . 
T 6 HOH A 12 117 46 HOH HOH . 
T 6 HOH A 13 118 50 HOH HOH . 
T 6 HOH A 14 119 61 HOH HOH . 
T 6 HOH A 15 120 62 HOH HOH . 
T 6 HOH A 16 121 64 HOH HOH . 
T 6 HOH A 17 122 69 HOH HOH . 
T 6 HOH A 18 123 77 HOH HOH . 
T 6 HOH A 19 124 79 HOH HOH . 
T 6 HOH A 20 125 80 HOH HOH . 
T 6 HOH A 21 126 93 HOH HOH . 
T 6 HOH A 22 154 154 HOH HOH . 
T 6 HOH A 23 164 164 HOH HOH . 
T 6 HOH A 24 206 206 HOH HOH . 
T 6 HOH A 25 208 208 HOH HOH . 
T 6 HOH A 26 257 257 HOH HOH . 
T 6 HOH A 27 285 285 HOH HOH . 
T 6 HOH A 28 294 294 HOH HOH . 
T 6 HOH A 29 301 301 HOH HOH . 
T 6 HOH A 30 308 308 HOH HOH . 
T 6 HOH A 31 311 311 HOH HOH . 
T 6 HOH A 32 313 313 HOH HOH . 
T 6 HOH A 33 319 319 HOH HOH . 
T 6 HOH A 34 324 324 HOH HOH . 
T 6 HOH A 35 325 325 HOH HOH . 
U 6 HOH B 1 107 7 HOH HOH . 
U 6 HOH B 2 108 10 HOH HOH . 
U 6 HOH B 3 109 21 HOH HOH . 
U 6 HOH B 4 110 26 HOH HOH . 
U 6 HOH B 5 111 31 HOH HOH . 
U 6 HOH B 6 112 42 HOH HOH . 
U 6 HOH B 7 113 44 HOH HOH . 
U 6 HOH B 8 114 66 HOH HOH . 
U 6 HOH B 9 115 70 HOH HOH . 
U 6 HOH B 10 116 89 HOH HOH . 
U 6 HOH B 11 117 117 HOH HOH . 
U 6 HOH B 12 118 92 HOH HOH . 
U 6 HOH B 13 119 2 HOH HOH . 
U 6 HOH B 14 159 159 HOH HOH . 
U 6 HOH B 15 166 166 HOH HOH . 
U 6 HOH B 16 198 198 HOH HOH . 
U 6 HOH B 17 209 209 HOH HOH . 
U 6 HOH B 18 264 264 HOH HOH . 
U 6 HOH B 19 267 267 HOH HOH . 
U 6 HOH B 20 268 268 HOH HOH . 
U 6 HOH B 21 275 275 HOH HOH . 
U 6 HOH B 22 276 276 HOH HOH . 
U 6 HOH B 23 278 278 HOH HOH . 
U 6 HOH B 24 280 280 HOH HOH . 
U 6 HOH B 25 295 295 HOH HOH . 
U 6 HOH B 26 297 297 HOH HOH . 
U 6 HOH B 27 299 299 HOH HOH . 
U 6 HOH B 28 300 300 HOH HOH . 
U 6 HOH B 29 310 310 HOH HOH . 
U 6 HOH B 30 312 312 HOH HOH . 
U 6 HOH B 31 317 317 HOH HOH . 
U 6 HOH B 32 323 323 HOH HOH . 
U 6 HOH B 33 326 326 HOH HOH . 
V 6 HOH C 1 104 8 HOH HOH . 
V 6 HOH C 2 105 13 HOH HOH . 
V 6 HOH C 3 106 106 HOH HOH . 
V 6 HOH C 4 107 14 HOH HOH . 
V 6 HOH C 5 108 19 HOH HOH . 
V 6 HOH C 6 109 23 HOH HOH . 
V 6 HOH C 7 110 27 HOH HOH . 
V 6 HOH C 8 111 29 HOH HOH . 
V 6 HOH C 9 112 32 HOH HOH . 
V 6 HOH C 10 113 36 HOH HOH . 
V 6 HOH C 11 114 39 HOH HOH . 
V 6 HOH C 12 115 45 HOH HOH . 
V 6 HOH C 13 116 48 HOH HOH . 
V 6 HOH C 14 117 49 HOH HOH . 
V 6 HOH C 15 118 74 HOH HOH . 
V 6 HOH C 16 119 75 HOH HOH . 
V 6 HOH C 17 120 85 HOH HOH . 
V 6 HOH C 18 121 86 HOH HOH . 
V 6 HOH C 19 122 90 HOH HOH . 
V 6 HOH C 20 123 100 HOH HOH . 
V 6 HOH C 21 124 28 HOH HOH . 
V 6 HOH C 22 130 130 HOH HOH . 
V 6 HOH C 23 162 162 HOH HOH . 
V 6 HOH C 24 210 210 HOH HOH . 
V 6 HOH C 25 265 265 HOH HOH . 
V 6 HOH C 26 279 279 HOH HOH . 
V 6 HOH C 27 281 281 HOH HOH . 
V 6 HOH C 28 284 284 HOH HOH . 
V 6 HOH C 29 290 290 HOH HOH . 
V 6 HOH C 30 293 293 HOH HOH . 
V 6 HOH C 31 296 296 HOH HOH . 
V 6 HOH C 32 298 298 HOH HOH . 
V 6 HOH C 33 315 315 HOH HOH . 
V 6 HOH C 34 318 318 HOH HOH . 
V 6 HOH C 35 321 321 HOH HOH . 
V 6 HOH C 36 327 327 HOH HOH . 
W 6 HOH D 1 101 101 HOH HOH . 
W 6 HOH D 2 102 1 HOH HOH . 
W 6 HOH D 3 103 5 HOH HOH . 
W 6 HOH D 4 104 9 HOH HOH . 
W 6 HOH D 5 105 11 HOH HOH . 
W 6 HOH D 6 106 12 HOH HOH . 
W 6 HOH D 7 107 16 HOH HOH . 
W 6 HOH D 8 108 20 HOH HOH . 
W 6 HOH D 9 110 33 HOH HOH . 
W 6 HOH D 10 111 34 HOH HOH . 
W 6 HOH D 11 112 35 HOH HOH . 
W 6 HOH D 12 113 113 HOH HOH . 
W 6 HOH D 13 114 37 HOH HOH . 
W 6 HOH D 14 115 38 HOH HOH . 
W 6 HOH D 15 116 41 HOH HOH . 
W 6 HOH D 16 117 55 HOH HOH . 
W 6 HOH D 17 118 65 HOH HOH . 
W 6 HOH D 18 119 67 HOH HOH . 
W 6 HOH D 19 120 71 HOH HOH . 
W 6 HOH D 20 121 76 HOH HOH . 
W 6 HOH D 21 122 98 HOH HOH . 
W 6 HOH D 22 158 158 HOH HOH . 
W 6 HOH D 23 207 207 HOH HOH . 
W 6 HOH D 24 216 216 HOH HOH . 
W 6 HOH D 25 266 266 HOH HOH . 
W 6 HOH D 26 283 283 HOH HOH . 
W 6 HOH D 27 302 302 HOH HOH . 
W 6 HOH D 28 303 303 HOH HOH . 
W 6 HOH D 29 306 306 HOH HOH . 
W 6 HOH D 30 307 307 HOH HOH . 
W 6 HOH D 31 309 309 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               35.598 
_atom_site.Cartn_y               2.122 
_atom_site.Cartn_z               42.799 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        65.5 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#