data_3NDU # _model_server_result.job_id Y3B5CnjDAY-CyQv85-hn4A _model_server_result.datetime_utc '2025-01-10 09:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ndu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1003}' # _entry.id 3NDU # _exptl.entry_id 3NDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.32 _cell.angle_gamma 90 _cell.entry_id 3NDU _cell.length_a 51.19 _cell.length_b 62.705 _cell.length_c 59.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,BA,CA 1 1 C,D,T,U,V,W,X,Y,Z,AA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N ? 5 O N N ? 5 P N N ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARF 1 A ARF 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B C ARF 1 B ARF 1 1_555 B N PRO 2 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O ILE 94 A ILE 94 1_555 S NA NA . B NA 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 BA O HOH . A HOH 112 1_555 J NA NA . A NA 1015 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 G O ACT . A ACT 1007 1_555 J NA NA . A NA 1015 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.053 ? metalc ? metalc4 B OD2 ASP 61 B ASP 61 1_555 Q NA NA . B NA 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 B OXT PHE 100 B PHE 100 1_555 S NA NA . B NA 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NDU _atom_sites.fract_transf_matrix[1][1] 0.019535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ROC A 1 101 2 ROC ROC . F 3 DMS A 1 102 4 DMS DMS . G 4 ACT A 1 1007 1007 ACT ACT . H 5 CL A 1 1010 1010 CL CL . I 6 GOL A 1 1012 1012 GOL GOL . J 7 NA A 1 1015 1015 NA NA . K 4 ACT A 1 1017 1017 ACT ACT . L 5 CL A 1 1021 1021 CL CL . M 3 DMS B 1 101 2 DMS DMS . N 6 GOL B 1 1001 1001 GOL GOL . O 5 CL B 1 1003 1003 CL CL . P 5 CL B 1 1005 1005 CL CL . Q 7 NA B 1 1014 1014 NA NA . R 4 ACT B 1 1016 1016 ACT ACT . S 7 NA B 1 1020 1020 NA NA . T 3 DMS C 1 100 3 DMS DMS . U 3 DMS C 1 101 6 DMS DMS . V 5 CL C 1 1004 1004 CL CL . W 5 CL C 1 1006 1006 CL CL . X 4 ACT C 1 1008 1008 ACT ACT . Y 6 GOL C 1 1013 1013 GOL GOL . Z 2 ROC D 1 100 1 ROC ROC . AA 3 DMS D 1 101 1 DMS DMS . BA 8 HOH A 1 104 104 HOH HOH . BA 8 HOH A 2 105 3 HOH HOH . BA 8 HOH A 3 106 6 HOH HOH . BA 8 HOH A 4 107 15 HOH HOH . BA 8 HOH A 5 108 108 HOH HOH . BA 8 HOH A 6 109 17 HOH HOH . BA 8 HOH A 7 110 18 HOH HOH . BA 8 HOH A 8 111 111 HOH HOH . BA 8 HOH A 9 112 22 HOH HOH . BA 8 HOH A 10 113 24 HOH HOH . BA 8 HOH A 11 114 25 HOH HOH . BA 8 HOH A 12 115 30 HOH HOH . BA 8 HOH A 13 116 116 HOH HOH . BA 8 HOH A 14 117 40 HOH HOH . BA 8 HOH A 15 118 118 HOH HOH . BA 8 HOH A 16 119 43 HOH HOH . BA 8 HOH A 17 120 46 HOH HOH . BA 8 HOH A 18 121 51 HOH HOH . BA 8 HOH A 19 122 53 HOH HOH . BA 8 HOH A 20 123 61 HOH HOH . BA 8 HOH A 21 124 62 HOH HOH . BA 8 HOH A 22 125 64 HOH HOH . BA 8 HOH A 23 126 126 HOH HOH . BA 8 HOH A 24 127 68 HOH HOH . BA 8 HOH A 25 128 76 HOH HOH . BA 8 HOH A 26 129 129 HOH HOH . BA 8 HOH A 27 130 77 HOH HOH . BA 8 HOH A 28 131 131 HOH HOH . BA 8 HOH A 29 132 78 HOH HOH . BA 8 HOH A 30 133 81 HOH HOH . BA 8 HOH A 31 134 134 HOH HOH . BA 8 HOH A 32 135 88 HOH HOH . BA 8 HOH A 33 136 91 HOH HOH . BA 8 HOH A 34 137 94 HOH HOH . BA 8 HOH A 35 138 96 HOH HOH . BA 8 HOH A 36 139 98 HOH HOH . BA 8 HOH A 37 140 140 HOH HOH . BA 8 HOH A 38 141 141 HOH HOH . BA 8 HOH A 39 142 102 HOH HOH . BA 8 HOH A 40 147 147 HOH HOH . BA 8 HOH A 41 152 152 HOH HOH . BA 8 HOH A 42 162 162 HOH HOH . BA 8 HOH A 43 163 163 HOH HOH . BA 8 HOH A 44 164 164 HOH HOH . BA 8 HOH A 45 169 169 HOH HOH . BA 8 HOH A 46 182 182 HOH HOH . BA 8 HOH A 47 191 191 HOH HOH . BA 8 HOH A 48 192 192 HOH HOH . BA 8 HOH A 49 196 196 HOH HOH . BA 8 HOH A 50 211 211 HOH HOH . BA 8 HOH A 51 214 214 HOH HOH . BA 8 HOH A 52 215 215 HOH HOH . BA 8 HOH A 53 236 236 HOH HOH . BA 8 HOH A 54 249 249 HOH HOH . BA 8 HOH A 55 314 314 HOH HOH . BA 8 HOH A 56 337 337 HOH HOH . BA 8 HOH A 57 345 345 HOH HOH . BA 8 HOH A 58 350 350 HOH HOH . BA 8 HOH A 59 407 407 HOH HOH . BA 8 HOH A 60 408 408 HOH HOH . BA 8 HOH A 61 474 474 HOH HOH . BA 8 HOH A 62 513 513 HOH HOH . BA 8 HOH A 63 520 520 HOH HOH . BA 8 HOH A 64 544 544 HOH HOH . BA 8 HOH A 65 545 545 HOH HOH . BA 8 HOH A 66 547 547 HOH HOH . BA 8 HOH A 67 568 568 HOH HOH . BA 8 HOH A 68 569 569 HOH HOH . BA 8 HOH A 69 570 570 HOH HOH . BA 8 HOH A 70 572 572 HOH HOH . BA 8 HOH A 71 575 575 HOH HOH . BA 8 HOH A 72 579 579 HOH HOH . CA 8 HOH B 1 102 7 HOH HOH . CA 8 HOH B 2 103 2 HOH HOH . CA 8 HOH B 3 104 12 HOH HOH . CA 8 HOH B 4 105 26 HOH HOH . CA 8 HOH B 5 106 31 HOH HOH . CA 8 HOH B 6 107 42 HOH HOH . CA 8 HOH B 7 108 44 HOH HOH . CA 8 HOH B 8 109 109 HOH HOH . CA 8 HOH B 9 110 56 HOH HOH . CA 8 HOH B 10 111 58 HOH HOH . CA 8 HOH B 11 112 112 HOH HOH . CA 8 HOH B 12 113 59 HOH HOH . CA 8 HOH B 13 114 63 HOH HOH . CA 8 HOH B 14 115 65 HOH HOH . CA 8 HOH B 15 116 69 HOH HOH . CA 8 HOH B 16 117 117 HOH HOH . CA 8 HOH B 17 118 87 HOH HOH . CA 8 HOH B 18 119 95 HOH HOH . CA 8 HOH B 19 120 10 HOH HOH . CA 8 HOH B 20 125 125 HOH HOH . CA 8 HOH B 21 148 148 HOH HOH . CA 8 HOH B 22 153 153 HOH HOH . CA 8 HOH B 23 157 157 HOH HOH . CA 8 HOH B 24 161 161 HOH HOH . CA 8 HOH B 25 179 179 HOH HOH . CA 8 HOH B 26 188 188 HOH HOH . CA 8 HOH B 27 193 193 HOH HOH . CA 8 HOH B 28 197 197 HOH HOH . CA 8 HOH B 29 202 202 HOH HOH . CA 8 HOH B 30 212 212 HOH HOH . CA 8 HOH B 31 223 223 HOH HOH . CA 8 HOH B 32 227 227 HOH HOH . CA 8 HOH B 33 228 228 HOH HOH . CA 8 HOH B 34 229 229 HOH HOH . CA 8 HOH B 35 240 240 HOH HOH . CA 8 HOH B 36 289 289 HOH HOH . CA 8 HOH B 37 305 305 HOH HOH . CA 8 HOH B 38 320 320 HOH HOH . CA 8 HOH B 39 324 324 HOH HOH . CA 8 HOH B 40 332 332 HOH HOH . CA 8 HOH B 41 333 333 HOH HOH . CA 8 HOH B 42 338 338 HOH HOH . CA 8 HOH B 43 339 339 HOH HOH . CA 8 HOH B 44 342 342 HOH HOH . CA 8 HOH B 45 346 346 HOH HOH . CA 8 HOH B 46 351 351 HOH HOH . CA 8 HOH B 47 356 356 HOH HOH . CA 8 HOH B 48 365 365 HOH HOH . CA 8 HOH B 49 367 367 HOH HOH . CA 8 HOH B 50 375 375 HOH HOH . CA 8 HOH B 51 411 411 HOH HOH . CA 8 HOH B 52 470 470 HOH HOH . CA 8 HOH B 53 548 548 HOH HOH . CA 8 HOH B 54 550 550 HOH HOH . CA 8 HOH B 55 560 560 HOH HOH . CA 8 HOH B 56 561 561 HOH HOH . CA 8 HOH B 57 564 564 HOH HOH . CA 8 HOH B 58 571 571 HOH HOH . CA 8 HOH B 59 576 576 HOH HOH . CA 8 HOH B 60 582 582 HOH HOH . DA 8 HOH C 1 102 8 HOH HOH . DA 8 HOH C 2 103 103 HOH HOH . DA 8 HOH C 3 104 13 HOH HOH . DA 8 HOH C 4 105 105 HOH HOH . DA 8 HOH C 5 106 106 HOH HOH . DA 8 HOH C 6 107 14 HOH HOH . DA 8 HOH C 7 108 19 HOH HOH . DA 8 HOH C 8 109 23 HOH HOH . DA 8 HOH C 9 110 27 HOH HOH . DA 8 HOH C 10 111 29 HOH HOH . DA 8 HOH C 11 112 32 HOH HOH . DA 8 HOH C 12 113 36 HOH HOH . DA 8 HOH C 13 114 39 HOH HOH . DA 8 HOH C 14 115 45 HOH HOH . DA 8 HOH C 15 116 49 HOH HOH . DA 8 HOH C 16 117 52 HOH HOH . DA 8 HOH C 17 118 67 HOH HOH . DA 8 HOH C 18 119 71 HOH HOH . DA 8 HOH C 19 120 74 HOH HOH . DA 8 HOH C 20 121 79 HOH HOH . DA 8 HOH C 21 122 80 HOH HOH . DA 8 HOH C 22 123 123 HOH HOH . DA 8 HOH C 23 124 83 HOH HOH . DA 8 HOH C 24 125 84 HOH HOH . DA 8 HOH C 25 126 90 HOH HOH . DA 8 HOH C 26 127 99 HOH HOH . DA 8 HOH C 27 128 128 HOH HOH . DA 8 HOH C 28 129 1 HOH HOH . DA 8 HOH C 29 136 136 HOH HOH . DA 8 HOH C 30 137 137 HOH HOH . DA 8 HOH C 31 138 138 HOH HOH . DA 8 HOH C 32 142 142 HOH HOH . DA 8 HOH C 33 144 144 HOH HOH . DA 8 HOH C 34 149 149 HOH HOH . DA 8 HOH C 35 159 159 HOH HOH . DA 8 HOH C 36 168 168 HOH HOH . DA 8 HOH C 37 171 171 HOH HOH . DA 8 HOH C 38 174 174 HOH HOH . DA 8 HOH C 39 177 177 HOH HOH . DA 8 HOH C 40 198 198 HOH HOH . DA 8 HOH C 41 213 213 HOH HOH . DA 8 HOH C 42 263 263 HOH HOH . DA 8 HOH C 43 299 299 HOH HOH . DA 8 HOH C 44 300 300 HOH HOH . DA 8 HOH C 45 301 301 HOH HOH . DA 8 HOH C 46 303 303 HOH HOH . DA 8 HOH C 47 304 304 HOH HOH . DA 8 HOH C 48 315 315 HOH HOH . DA 8 HOH C 49 341 341 HOH HOH . DA 8 HOH C 50 344 344 HOH HOH . DA 8 HOH C 51 348 348 HOH HOH . DA 8 HOH C 52 349 349 HOH HOH . DA 8 HOH C 53 360 360 HOH HOH . DA 8 HOH C 54 388 388 HOH HOH . DA 8 HOH C 55 426 426 HOH HOH . DA 8 HOH C 56 479 479 HOH HOH . DA 8 HOH C 57 501 501 HOH HOH . DA 8 HOH C 58 502 502 HOH HOH . DA 8 HOH C 59 546 546 HOH HOH . DA 8 HOH C 60 549 549 HOH HOH . DA 8 HOH C 61 552 552 HOH HOH . DA 8 HOH C 62 565 565 HOH HOH . DA 8 HOH C 63 573 573 HOH HOH . DA 8 HOH C 64 574 574 HOH HOH . DA 8 HOH C 65 578 578 HOH HOH . DA 8 HOH C 66 581 581 HOH HOH . DA 8 HOH C 67 583 583 HOH HOH . DA 8 HOH C 68 584 584 HOH HOH . EA 8 HOH D 1 103 5 HOH HOH . EA 8 HOH D 2 104 9 HOH HOH . EA 8 HOH D 3 105 11 HOH HOH . EA 8 HOH D 4 106 16 HOH HOH . EA 8 HOH D 5 107 20 HOH HOH . EA 8 HOH D 6 108 28 HOH HOH . EA 8 HOH D 7 109 33 HOH HOH . EA 8 HOH D 8 110 34 HOH HOH . EA 8 HOH D 9 111 35 HOH HOH . EA 8 HOH D 10 112 37 HOH HOH . EA 8 HOH D 11 113 113 HOH HOH . EA 8 HOH D 12 114 38 HOH HOH . EA 8 HOH D 13 115 41 HOH HOH . EA 8 HOH D 14 116 55 HOH HOH . EA 8 HOH D 15 117 66 HOH HOH . EA 8 HOH D 16 118 70 HOH HOH . EA 8 HOH D 17 119 72 HOH HOH . EA 8 HOH D 18 120 73 HOH HOH . EA 8 HOH D 19 121 82 HOH HOH . EA 8 HOH D 20 122 85 HOH HOH . EA 8 HOH D 21 123 86 HOH HOH . EA 8 HOH D 22 124 93 HOH HOH . EA 8 HOH D 23 125 100 HOH HOH . EA 8 HOH D 24 126 101 HOH HOH . EA 8 HOH D 25 127 127 HOH HOH . EA 8 HOH D 26 130 130 HOH HOH . EA 8 HOH D 27 145 145 HOH HOH . EA 8 HOH D 28 150 150 HOH HOH . EA 8 HOH D 29 155 155 HOH HOH . EA 8 HOH D 30 166 166 HOH HOH . EA 8 HOH D 31 175 175 HOH HOH . EA 8 HOH D 32 176 176 HOH HOH . EA 8 HOH D 33 181 181 HOH HOH . EA 8 HOH D 34 184 184 HOH HOH . EA 8 HOH D 35 195 195 HOH HOH . EA 8 HOH D 36 203 203 HOH HOH . EA 8 HOH D 37 219 219 HOH HOH . EA 8 HOH D 38 222 222 HOH HOH . EA 8 HOH D 39 224 224 HOH HOH . EA 8 HOH D 40 233 233 HOH HOH . EA 8 HOH D 41 234 234 HOH HOH . EA 8 HOH D 42 241 241 HOH HOH . EA 8 HOH D 43 244 244 HOH HOH . EA 8 HOH D 44 270 270 HOH HOH . EA 8 HOH D 45 298 298 HOH HOH . EA 8 HOH D 46 302 302 HOH HOH . EA 8 HOH D 47 310 310 HOH HOH . EA 8 HOH D 48 322 322 HOH HOH . EA 8 HOH D 49 387 387 HOH HOH . EA 8 HOH D 50 425 425 HOH HOH . EA 8 HOH D 51 444 444 HOH HOH . EA 8 HOH D 52 454 454 HOH HOH . EA 8 HOH D 53 530 530 HOH HOH . EA 8 HOH D 54 541 541 HOH HOH . EA 8 HOH D 55 543 543 HOH HOH . EA 8 HOH D 56 553 553 HOH HOH . EA 8 HOH D 57 554 554 HOH HOH . EA 8 HOH D 58 557 557 HOH HOH . EA 8 HOH D 59 559 559 HOH HOH . EA 8 HOH D 60 563 563 HOH HOH . EA 8 HOH D 61 567 567 HOH HOH . EA 8 HOH D 62 585 585 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 5 _atom_site.Cartn_x 38.618 _atom_site.Cartn_y 20.65 _atom_site.Cartn_z 30.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #