data_3NDW
#
_model_server_result.job_id            G5MyqEMmUXpeKPMhmQiaTg 
_model_server_result.datetime_utc      '2024-11-24 03:22:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ndw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":103}' 
#
_entry.id    3NDW 
#
_exptl.entry_id    3NDW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NDW 
_cell.length_a            51.254 
_cell.length_b            58.793 
_cell.length_c            61.334 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NDW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 K N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OE1 
_struct_conn.ptnr1_label_comp_id            GLU 
_struct_conn.ptnr1_label_seq_id             21 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             GLU 
_struct_conn.ptnr1_auth_seq_id              21 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            NA 
_struct_conn.ptnr2_label_comp_id            NA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NA 
_struct_conn.ptnr2_auth_seq_id              103 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.138 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NDW 
_atom_sites.fract_transf_matrix[1][1]    0.019511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RIT A 1 100 1 RIT RIT . 
D 3 DMS A 1 101 3 DMS DMS . 
E 4 SO4 A 1 102 51 SO4 SO4 . 
F 5 NA A 1 103 54 NA NA . 
G 3 DMS B 1 100 1 DMS DMS . 
H 3 DMS B 1 101 4 DMS DMS . 
I 4 SO4 B 1 102 50 SO4 SO4 . 
J 6 ACT B 1 103 52 ACT ACT . 
K 5 NA B 1 104 53 NA NA . 
L 7 HOH A 1 104 104 HOH HOH . 
L 7 HOH A 2 105 105 HOH HOH . 
L 7 HOH A 3 106 2 HOH HOH . 
L 7 HOH A 4 107 3 HOH HOH . 
L 7 HOH A 5 108 5 HOH HOH . 
L 7 HOH A 6 109 7 HOH HOH . 
L 7 HOH A 7 110 11 HOH HOH . 
L 7 HOH A 8 111 16 HOH HOH . 
L 7 HOH A 9 112 112 HOH HOH . 
L 7 HOH A 10 113 17 HOH HOH . 
L 7 HOH A 11 114 18 HOH HOH . 
L 7 HOH A 12 115 115 HOH HOH . 
L 7 HOH A 13 116 19 HOH HOH . 
L 7 HOH A 14 117 26 HOH HOH . 
L 7 HOH A 15 118 32 HOH HOH . 
L 7 HOH A 16 119 119 HOH HOH . 
L 7 HOH A 17 120 120 HOH HOH . 
L 7 HOH A 18 121 33 HOH HOH . 
L 7 HOH A 19 122 34 HOH HOH . 
L 7 HOH A 20 123 123 HOH HOH . 
L 7 HOH A 21 124 36 HOH HOH . 
L 7 HOH A 22 125 41 HOH HOH . 
L 7 HOH A 23 126 42 HOH HOH . 
L 7 HOH A 24 127 43 HOH HOH . 
L 7 HOH A 25 128 47 HOH HOH . 
L 7 HOH A 26 129 48 HOH HOH . 
L 7 HOH A 27 130 49 HOH HOH . 
L 7 HOH A 28 131 52 HOH HOH . 
L 7 HOH A 29 132 54 HOH HOH . 
L 7 HOH A 30 133 55 HOH HOH . 
L 7 HOH A 31 134 60 HOH HOH . 
L 7 HOH A 32 135 135 HOH HOH . 
L 7 HOH A 33 136 63 HOH HOH . 
L 7 HOH A 34 137 66 HOH HOH . 
L 7 HOH A 35 138 68 HOH HOH . 
L 7 HOH A 36 139 74 HOH HOH . 
L 7 HOH A 37 140 75 HOH HOH . 
L 7 HOH A 38 141 76 HOH HOH . 
L 7 HOH A 39 142 77 HOH HOH . 
L 7 HOH A 40 143 79 HOH HOH . 
L 7 HOH A 41 144 144 HOH HOH . 
L 7 HOH A 42 145 80 HOH HOH . 
L 7 HOH A 43 146 81 HOH HOH . 
L 7 HOH A 44 147 147 HOH HOH . 
L 7 HOH A 45 148 82 HOH HOH . 
L 7 HOH A 46 149 149 HOH HOH . 
L 7 HOH A 47 150 84 HOH HOH . 
L 7 HOH A 48 151 89 HOH HOH . 
L 7 HOH A 49 152 97 HOH HOH . 
L 7 HOH A 50 153 153 HOH HOH . 
L 7 HOH A 51 154 98 HOH HOH . 
L 7 HOH A 52 155 155 HOH HOH . 
L 7 HOH A 53 156 156 HOH HOH . 
L 7 HOH A 54 157 157 HOH HOH . 
L 7 HOH A 55 158 99 HOH HOH . 
L 7 HOH A 56 159 100 HOH HOH . 
L 7 HOH A 57 160 101 HOH HOH . 
L 7 HOH A 58 161 161 HOH HOH . 
L 7 HOH A 59 162 102 HOH HOH . 
L 7 HOH A 60 163 103 HOH HOH . 
L 7 HOH A 61 164 164 HOH HOH . 
L 7 HOH A 62 165 165 HOH HOH . 
L 7 HOH A 63 167 167 HOH HOH . 
L 7 HOH A 64 173 173 HOH HOH . 
L 7 HOH A 65 175 175 HOH HOH . 
L 7 HOH A 66 176 176 HOH HOH . 
L 7 HOH A 67 178 178 HOH HOH . 
L 7 HOH A 68 180 180 HOH HOH . 
L 7 HOH A 69 181 181 HOH HOH . 
L 7 HOH A 70 183 183 HOH HOH . 
L 7 HOH A 71 185 185 HOH HOH . 
L 7 HOH A 72 189 189 HOH HOH . 
L 7 HOH A 73 190 190 HOH HOH . 
L 7 HOH A 74 193 193 HOH HOH . 
L 7 HOH A 75 196 196 HOH HOH . 
L 7 HOH A 76 198 198 HOH HOH . 
L 7 HOH A 77 206 206 HOH HOH . 
L 7 HOH A 78 210 210 HOH HOH . 
L 7 HOH A 79 213 213 HOH HOH . 
L 7 HOH A 80 214 214 HOH HOH . 
L 7 HOH A 81 216 216 HOH HOH . 
L 7 HOH A 82 221 221 HOH HOH . 
L 7 HOH A 83 222 222 HOH HOH . 
L 7 HOH A 84 223 223 HOH HOH . 
L 7 HOH A 85 226 226 HOH HOH . 
L 7 HOH A 86 227 227 HOH HOH . 
L 7 HOH A 87 229 229 HOH HOH . 
L 7 HOH A 88 234 234 HOH HOH . 
L 7 HOH A 89 241 241 HOH HOH . 
L 7 HOH A 90 246 246 HOH HOH . 
L 7 HOH A 91 250 250 HOH HOH . 
L 7 HOH A 92 252 252 HOH HOH . 
L 7 HOH A 93 260 260 HOH HOH . 
L 7 HOH A 94 264 264 HOH HOH . 
L 7 HOH A 95 267 267 HOH HOH . 
L 7 HOH A 96 270 270 HOH HOH . 
L 7 HOH A 97 271 271 HOH HOH . 
L 7 HOH A 98 281 281 HOH HOH . 
L 7 HOH A 99 282 282 HOH HOH . 
L 7 HOH A 100 292 292 HOH HOH . 
L 7 HOH A 101 293 293 HOH HOH . 
L 7 HOH A 102 295 295 HOH HOH . 
L 7 HOH A 103 296 296 HOH HOH . 
L 7 HOH A 104 300 300 HOH HOH . 
L 7 HOH A 105 301 301 HOH HOH . 
L 7 HOH A 106 302 302 HOH HOH . 
L 7 HOH A 107 303 303 HOH HOH . 
L 7 HOH A 108 306 306 HOH HOH . 
L 7 HOH A 109 307 307 HOH HOH . 
L 7 HOH A 110 310 310 HOH HOH . 
L 7 HOH A 111 313 313 HOH HOH . 
L 7 HOH A 112 323 323 HOH HOH . 
L 7 HOH A 113 324 324 HOH HOH . 
L 7 HOH A 114 327 327 HOH HOH . 
M 7 HOH B 1 105 1 HOH HOH . 
M 7 HOH B 2 106 6 HOH HOH . 
M 7 HOH B 3 107 9 HOH HOH . 
M 7 HOH B 4 108 108 HOH HOH . 
M 7 HOH B 5 109 10 HOH HOH . 
M 7 HOH B 6 110 110 HOH HOH . 
M 7 HOH B 7 111 12 HOH HOH . 
M 7 HOH B 8 112 13 HOH HOH . 
M 7 HOH B 9 113 113 HOH HOH . 
M 7 HOH B 10 114 14 HOH HOH . 
M 7 HOH B 11 115 15 HOH HOH . 
M 7 HOH B 12 116 20 HOH HOH . 
M 7 HOH B 13 117 117 HOH HOH . 
M 7 HOH B 14 118 118 HOH HOH . 
M 7 HOH B 15 119 22 HOH HOH . 
M 7 HOH B 16 120 23 HOH HOH . 
M 7 HOH B 17 121 25 HOH HOH . 
M 7 HOH B 18 122 122 HOH HOH . 
M 7 HOH B 19 123 27 HOH HOH . 
M 7 HOH B 20 124 124 HOH HOH . 
M 7 HOH B 21 125 125 HOH HOH . 
M 7 HOH B 22 126 126 HOH HOH . 
M 7 HOH B 23 127 28 HOH HOH . 
M 7 HOH B 24 128 128 HOH HOH . 
M 7 HOH B 25 129 129 HOH HOH . 
M 7 HOH B 26 130 29 HOH HOH . 
M 7 HOH B 27 131 131 HOH HOH . 
M 7 HOH B 28 132 30 HOH HOH . 
M 7 HOH B 29 133 133 HOH HOH . 
M 7 HOH B 30 134 31 HOH HOH . 
M 7 HOH B 31 135 35 HOH HOH . 
M 7 HOH B 32 136 37 HOH HOH . 
M 7 HOH B 33 137 38 HOH HOH . 
M 7 HOH B 34 138 39 HOH HOH . 
M 7 HOH B 35 139 40 HOH HOH . 
M 7 HOH B 36 140 44 HOH HOH . 
M 7 HOH B 37 141 46 HOH HOH . 
M 7 HOH B 38 142 50 HOH HOH . 
M 7 HOH B 39 143 51 HOH HOH . 
M 7 HOH B 40 144 53 HOH HOH . 
M 7 HOH B 41 145 145 HOH HOH . 
M 7 HOH B 42 146 56 HOH HOH . 
M 7 HOH B 43 147 57 HOH HOH . 
M 7 HOH B 44 148 148 HOH HOH . 
M 7 HOH B 45 149 58 HOH HOH . 
M 7 HOH B 46 150 59 HOH HOH . 
M 7 HOH B 47 151 61 HOH HOH . 
M 7 HOH B 48 152 152 HOH HOH . 
M 7 HOH B 49 153 65 HOH HOH . 
M 7 HOH B 50 154 67 HOH HOH . 
M 7 HOH B 51 155 69 HOH HOH . 
M 7 HOH B 52 156 70 HOH HOH . 
M 7 HOH B 53 157 72 HOH HOH . 
M 7 HOH B 54 158 158 HOH HOH . 
M 7 HOH B 55 159 159 HOH HOH . 
M 7 HOH B 56 160 160 HOH HOH . 
M 7 HOH B 57 161 78 HOH HOH . 
M 7 HOH B 58 162 86 HOH HOH . 
M 7 HOH B 59 163 87 HOH HOH . 
M 7 HOH B 60 164 88 HOH HOH . 
M 7 HOH B 61 165 90 HOH HOH . 
M 7 HOH B 62 166 166 HOH HOH . 
M 7 HOH B 63 167 91 HOH HOH . 
M 7 HOH B 64 168 93 HOH HOH . 
M 7 HOH B 65 169 169 HOH HOH . 
M 7 HOH B 66 170 95 HOH HOH . 
M 7 HOH B 67 174 174 HOH HOH . 
M 7 HOH B 68 177 177 HOH HOH . 
M 7 HOH B 69 182 182 HOH HOH . 
M 7 HOH B 70 184 184 HOH HOH . 
M 7 HOH B 71 186 186 HOH HOH . 
M 7 HOH B 72 191 191 HOH HOH . 
M 7 HOH B 73 192 192 HOH HOH . 
M 7 HOH B 74 194 194 HOH HOH . 
M 7 HOH B 75 199 199 HOH HOH . 
M 7 HOH B 76 200 200 HOH HOH . 
M 7 HOH B 77 204 204 HOH HOH . 
M 7 HOH B 78 207 207 HOH HOH . 
M 7 HOH B 79 209 209 HOH HOH . 
M 7 HOH B 80 211 211 HOH HOH . 
M 7 HOH B 81 212 212 HOH HOH . 
M 7 HOH B 82 217 217 HOH HOH . 
M 7 HOH B 83 220 220 HOH HOH . 
M 7 HOH B 84 224 224 HOH HOH . 
M 7 HOH B 85 228 228 HOH HOH . 
M 7 HOH B 86 230 230 HOH HOH . 
M 7 HOH B 87 231 231 HOH HOH . 
M 7 HOH B 88 232 232 HOH HOH . 
M 7 HOH B 89 233 233 HOH HOH . 
M 7 HOH B 90 236 236 HOH HOH . 
M 7 HOH B 91 240 240 HOH HOH . 
M 7 HOH B 92 242 242 HOH HOH . 
M 7 HOH B 93 243 243 HOH HOH . 
M 7 HOH B 94 245 245 HOH HOH . 
M 7 HOH B 95 248 248 HOH HOH . 
M 7 HOH B 96 249 249 HOH HOH . 
M 7 HOH B 97 253 253 HOH HOH . 
M 7 HOH B 98 254 254 HOH HOH . 
M 7 HOH B 99 256 256 HOH HOH . 
M 7 HOH B 100 258 258 HOH HOH . 
M 7 HOH B 101 259 259 HOH HOH . 
M 7 HOH B 102 263 263 HOH HOH . 
M 7 HOH B 103 266 266 HOH HOH . 
M 7 HOH B 104 268 268 HOH HOH . 
M 7 HOH B 105 273 273 HOH HOH . 
M 7 HOH B 106 283 283 HOH HOH . 
M 7 HOH B 107 287 287 HOH HOH . 
M 7 HOH B 108 288 288 HOH HOH . 
M 7 HOH B 109 289 289 HOH HOH . 
M 7 HOH B 110 291 291 HOH HOH . 
M 7 HOH B 111 297 297 HOH HOH . 
M 7 HOH B 112 298 298 HOH HOH . 
M 7 HOH B 113 304 304 HOH HOH . 
M 7 HOH B 114 309 309 HOH HOH . 
M 7 HOH B 115 311 311 HOH HOH . 
M 7 HOH B 116 312 312 HOH HOH . 
M 7 HOH B 117 321 321 HOH HOH . 
M 7 HOH B 118 322 322 HOH HOH . 
M 7 HOH B 119 325 325 HOH HOH . 
M 7 HOH B 120 326 326 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               8.994 
_atom_site.Cartn_y               14.543 
_atom_site.Cartn_z               17.938 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        74.39 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           103 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#