data_3NDX
#
_model_server_result.job_id            G2-jvm236gG5AM-txaD46Q 
_model_server_result.datetime_utc      '2024-11-24 03:58:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ndx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":101}' 
#
_entry.id    3NDX 
#
_exptl.entry_id    3NDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NDX 
_cell.length_a            51.16 
_cell.length_b            58.567 
_cell.length_c            61.143 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3NDX 
_atom_sites.fract_transf_matrix[1][1]    0.019547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016355 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RIT A 1 100 100 RIT RIT . 
D 3 DMS A 1 991 991 DMS DMS . 
E 4 GOL A 1 1041 1041 GOL GOL . 
F 5 CL A 1 308 308 CL CL . 
G 6 SO4 B 1 100 100 SO4 SO4 . 
H 4 GOL B 1 101 101 GOL GOL . 
I 3 DMS B 1 992 992 DMS DMS . 
J 3 DMS B 1 993 993 DMS DMS . 
K 3 DMS B 1 994 994 DMS DMS . 
L 6 SO4 B 1 1040 1040 SO4 SO4 . 
M 7 HOH A 1 101 101 HOH HOH . 
M 7 HOH A 2 102 102 HOH HOH . 
M 7 HOH A 3 103 103 HOH HOH . 
M 7 HOH A 4 104 104 HOH HOH . 
M 7 HOH A 5 105 105 HOH HOH . 
M 7 HOH A 6 106 106 HOH HOH . 
M 7 HOH A 7 107 107 HOH HOH . 
M 7 HOH A 8 108 108 HOH HOH . 
M 7 HOH A 9 109 109 HOH HOH . 
M 7 HOH A 10 110 110 HOH HOH . 
M 7 HOH A 11 111 111 HOH HOH . 
M 7 HOH A 12 112 112 HOH HOH . 
M 7 HOH A 13 113 113 HOH HOH . 
M 7 HOH A 14 114 114 HOH HOH . 
M 7 HOH A 15 115 115 HOH HOH . 
M 7 HOH A 16 116 116 HOH HOH . 
M 7 HOH A 17 117 117 HOH HOH . 
M 7 HOH A 18 118 118 HOH HOH . 
M 7 HOH A 19 119 119 HOH HOH . 
M 7 HOH A 20 120 120 HOH HOH . 
M 7 HOH A 21 121 121 HOH HOH . 
M 7 HOH A 22 122 122 HOH HOH . 
M 7 HOH A 23 123 123 HOH HOH . 
M 7 HOH A 24 124 124 HOH HOH . 
M 7 HOH A 25 125 125 HOH HOH . 
M 7 HOH A 26 126 126 HOH HOH . 
M 7 HOH A 27 127 127 HOH HOH . 
M 7 HOH A 28 128 128 HOH HOH . 
M 7 HOH A 29 129 129 HOH HOH . 
M 7 HOH A 30 130 130 HOH HOH . 
M 7 HOH A 31 131 131 HOH HOH . 
M 7 HOH A 32 132 132 HOH HOH . 
M 7 HOH A 33 133 133 HOH HOH . 
M 7 HOH A 34 134 134 HOH HOH . 
M 7 HOH A 35 135 135 HOH HOH . 
M 7 HOH A 36 136 136 HOH HOH . 
M 7 HOH A 37 137 137 HOH HOH . 
M 7 HOH A 38 138 138 HOH HOH . 
M 7 HOH A 39 139 139 HOH HOH . 
M 7 HOH A 40 140 140 HOH HOH . 
M 7 HOH A 41 141 141 HOH HOH . 
M 7 HOH A 42 142 142 HOH HOH . 
M 7 HOH A 43 143 143 HOH HOH . 
M 7 HOH A 44 144 144 HOH HOH . 
M 7 HOH A 45 145 145 HOH HOH . 
M 7 HOH A 46 146 146 HOH HOH . 
M 7 HOH A 47 147 147 HOH HOH . 
M 7 HOH A 48 148 148 HOH HOH . 
M 7 HOH A 49 149 149 HOH HOH . 
M 7 HOH A 50 150 150 HOH HOH . 
M 7 HOH A 51 151 151 HOH HOH . 
M 7 HOH A 52 152 152 HOH HOH . 
M 7 HOH A 53 153 153 HOH HOH . 
M 7 HOH A 54 154 154 HOH HOH . 
M 7 HOH A 55 155 155 HOH HOH . 
M 7 HOH A 56 156 156 HOH HOH . 
M 7 HOH A 57 157 157 HOH HOH . 
M 7 HOH A 58 158 158 HOH HOH . 
M 7 HOH A 59 159 159 HOH HOH . 
M 7 HOH A 60 160 160 HOH HOH . 
M 7 HOH A 61 161 161 HOH HOH . 
M 7 HOH A 62 162 162 HOH HOH . 
M 7 HOH A 63 163 163 HOH HOH . 
M 7 HOH A 64 164 164 HOH HOH . 
M 7 HOH A 65 165 165 HOH HOH . 
M 7 HOH A 66 166 166 HOH HOH . 
M 7 HOH A 67 167 167 HOH HOH . 
M 7 HOH A 68 168 168 HOH HOH . 
M 7 HOH A 69 170 170 HOH HOH . 
M 7 HOH A 70 171 171 HOH HOH . 
M 7 HOH A 71 172 172 HOH HOH . 
M 7 HOH A 72 174 174 HOH HOH . 
M 7 HOH A 73 175 175 HOH HOH . 
M 7 HOH A 74 176 176 HOH HOH . 
M 7 HOH A 75 177 177 HOH HOH . 
M 7 HOH A 76 184 184 HOH HOH . 
M 7 HOH A 77 190 190 HOH HOH . 
M 7 HOH A 78 191 191 HOH HOH . 
M 7 HOH A 79 193 193 HOH HOH . 
M 7 HOH A 80 201 201 HOH HOH . 
M 7 HOH A 81 209 209 HOH HOH . 
M 7 HOH A 82 210 210 HOH HOH . 
M 7 HOH A 83 216 216 HOH HOH . 
M 7 HOH A 84 217 217 HOH HOH . 
M 7 HOH A 85 218 218 HOH HOH . 
M 7 HOH A 86 219 219 HOH HOH . 
M 7 HOH A 87 220 220 HOH HOH . 
M 7 HOH A 88 223 223 HOH HOH . 
M 7 HOH A 89 224 224 HOH HOH . 
M 7 HOH A 90 229 229 HOH HOH . 
M 7 HOH A 91 230 230 HOH HOH . 
M 7 HOH A 92 231 231 HOH HOH . 
M 7 HOH A 93 234 234 HOH HOH . 
M 7 HOH A 94 239 239 HOH HOH . 
M 7 HOH A 95 241 241 HOH HOH . 
M 7 HOH A 96 242 242 HOH HOH . 
M 7 HOH A 97 244 244 HOH HOH . 
M 7 HOH A 98 245 245 HOH HOH . 
M 7 HOH A 99 248 248 HOH HOH . 
M 7 HOH A 100 249 249 HOH HOH . 
M 7 HOH A 101 253 253 HOH HOH . 
M 7 HOH A 102 254 254 HOH HOH . 
M 7 HOH A 103 255 255 HOH HOH . 
M 7 HOH A 104 259 259 HOH HOH . 
M 7 HOH A 105 260 260 HOH HOH . 
M 7 HOH A 106 265 265 HOH HOH . 
M 7 HOH A 107 267 267 HOH HOH . 
M 7 HOH A 108 269 269 HOH HOH . 
M 7 HOH A 109 271 271 HOH HOH . 
M 7 HOH A 110 273 273 HOH HOH . 
M 7 HOH A 111 277 277 HOH HOH . 
M 7 HOH A 112 279 279 HOH HOH . 
M 7 HOH A 113 282 282 HOH HOH . 
M 7 HOH A 114 289 289 HOH HOH . 
M 7 HOH A 115 290 290 HOH HOH . 
M 7 HOH A 116 296 296 HOH HOH . 
M 7 HOH A 117 302 302 HOH HOH . 
M 7 HOH A 118 303 303 HOH HOH . 
M 7 HOH A 119 305 305 HOH HOH . 
M 7 HOH A 120 306 306 HOH HOH . 
M 7 HOH A 121 311 311 HOH HOH . 
M 7 HOH A 122 315 315 HOH HOH . 
M 7 HOH A 123 318 318 HOH HOH . 
M 7 HOH A 124 322 322 HOH HOH . 
M 7 HOH A 125 323 323 HOH HOH . 
M 7 HOH A 126 325 325 HOH HOH . 
M 7 HOH A 127 327 327 HOH HOH . 
M 7 HOH A 128 334 334 HOH HOH . 
M 7 HOH A 129 335 335 HOH HOH . 
M 7 HOH A 130 338 338 HOH HOH . 
M 7 HOH A 131 340 340 HOH HOH . 
N 7 HOH B 1 102 102 HOH HOH . 
N 7 HOH B 2 103 103 HOH HOH . 
N 7 HOH B 3 104 104 HOH HOH . 
N 7 HOH B 4 105 105 HOH HOH . 
N 7 HOH B 5 106 106 HOH HOH . 
N 7 HOH B 6 107 107 HOH HOH . 
N 7 HOH B 7 108 108 HOH HOH . 
N 7 HOH B 8 109 109 HOH HOH . 
N 7 HOH B 9 110 110 HOH HOH . 
N 7 HOH B 10 111 111 HOH HOH . 
N 7 HOH B 11 112 112 HOH HOH . 
N 7 HOH B 12 113 113 HOH HOH . 
N 7 HOH B 13 114 114 HOH HOH . 
N 7 HOH B 14 115 115 HOH HOH . 
N 7 HOH B 15 116 116 HOH HOH . 
N 7 HOH B 16 117 117 HOH HOH . 
N 7 HOH B 17 118 118 HOH HOH . 
N 7 HOH B 18 119 119 HOH HOH . 
N 7 HOH B 19 120 120 HOH HOH . 
N 7 HOH B 20 121 121 HOH HOH . 
N 7 HOH B 21 122 122 HOH HOH . 
N 7 HOH B 22 123 123 HOH HOH . 
N 7 HOH B 23 124 124 HOH HOH . 
N 7 HOH B 24 125 125 HOH HOH . 
N 7 HOH B 25 126 126 HOH HOH . 
N 7 HOH B 26 127 127 HOH HOH . 
N 7 HOH B 27 128 128 HOH HOH . 
N 7 HOH B 28 129 129 HOH HOH . 
N 7 HOH B 29 130 130 HOH HOH . 
N 7 HOH B 30 131 131 HOH HOH . 
N 7 HOH B 31 132 132 HOH HOH . 
N 7 HOH B 32 133 133 HOH HOH . 
N 7 HOH B 33 134 134 HOH HOH . 
N 7 HOH B 34 135 135 HOH HOH . 
N 7 HOH B 35 136 136 HOH HOH . 
N 7 HOH B 36 137 137 HOH HOH . 
N 7 HOH B 37 138 138 HOH HOH . 
N 7 HOH B 38 139 139 HOH HOH . 
N 7 HOH B 39 140 140 HOH HOH . 
N 7 HOH B 40 141 141 HOH HOH . 
N 7 HOH B 41 142 142 HOH HOH . 
N 7 HOH B 42 143 143 HOH HOH . 
N 7 HOH B 43 144 144 HOH HOH . 
N 7 HOH B 44 145 145 HOH HOH . 
N 7 HOH B 45 146 146 HOH HOH . 
N 7 HOH B 46 147 147 HOH HOH . 
N 7 HOH B 47 148 148 HOH HOH . 
N 7 HOH B 48 149 149 HOH HOH . 
N 7 HOH B 49 150 150 HOH HOH . 
N 7 HOH B 50 151 151 HOH HOH . 
N 7 HOH B 51 152 152 HOH HOH . 
N 7 HOH B 52 153 153 HOH HOH . 
N 7 HOH B 53 154 154 HOH HOH . 
N 7 HOH B 54 155 155 HOH HOH . 
N 7 HOH B 55 156 156 HOH HOH . 
N 7 HOH B 56 157 157 HOH HOH . 
N 7 HOH B 57 158 158 HOH HOH . 
N 7 HOH B 58 159 159 HOH HOH . 
N 7 HOH B 59 160 160 HOH HOH . 
N 7 HOH B 60 161 161 HOH HOH . 
N 7 HOH B 61 162 162 HOH HOH . 
N 7 HOH B 62 163 163 HOH HOH . 
N 7 HOH B 63 164 164 HOH HOH . 
N 7 HOH B 64 165 165 HOH HOH . 
N 7 HOH B 65 166 166 HOH HOH . 
N 7 HOH B 66 167 167 HOH HOH . 
N 7 HOH B 67 168 168 HOH HOH . 
N 7 HOH B 68 169 169 HOH HOH . 
N 7 HOH B 69 170 170 HOH HOH . 
N 7 HOH B 70 171 171 HOH HOH . 
N 7 HOH B 71 172 172 HOH HOH . 
N 7 HOH B 72 173 173 HOH HOH . 
N 7 HOH B 73 174 174 HOH HOH . 
N 7 HOH B 74 175 175 HOH HOH . 
N 7 HOH B 75 176 176 HOH HOH . 
N 7 HOH B 76 177 177 HOH HOH . 
N 7 HOH B 77 178 178 HOH HOH . 
N 7 HOH B 78 179 179 HOH HOH . 
N 7 HOH B 79 180 180 HOH HOH . 
N 7 HOH B 80 181 181 HOH HOH . 
N 7 HOH B 81 182 182 HOH HOH . 
N 7 HOH B 82 183 183 HOH HOH . 
N 7 HOH B 83 184 184 HOH HOH . 
N 7 HOH B 84 185 185 HOH HOH . 
N 7 HOH B 85 186 186 HOH HOH . 
N 7 HOH B 86 187 187 HOH HOH . 
N 7 HOH B 87 188 188 HOH HOH . 
N 7 HOH B 88 189 189 HOH HOH . 
N 7 HOH B 89 195 195 HOH HOH . 
N 7 HOH B 90 196 196 HOH HOH . 
N 7 HOH B 91 197 197 HOH HOH . 
N 7 HOH B 92 203 203 HOH HOH . 
N 7 HOH B 93 205 205 HOH HOH . 
N 7 HOH B 94 214 214 HOH HOH . 
N 7 HOH B 95 215 215 HOH HOH . 
N 7 HOH B 96 221 221 HOH HOH . 
N 7 HOH B 97 222 222 HOH HOH . 
N 7 HOH B 98 226 226 HOH HOH . 
N 7 HOH B 99 227 227 HOH HOH . 
N 7 HOH B 100 228 228 HOH HOH . 
N 7 HOH B 101 232 232 HOH HOH . 
N 7 HOH B 102 235 235 HOH HOH . 
N 7 HOH B 103 237 237 HOH HOH . 
N 7 HOH B 104 238 238 HOH HOH . 
N 7 HOH B 105 240 240 HOH HOH . 
N 7 HOH B 106 243 243 HOH HOH . 
N 7 HOH B 107 251 251 HOH HOH . 
N 7 HOH B 108 257 257 HOH HOH . 
N 7 HOH B 109 261 261 HOH HOH . 
N 7 HOH B 110 272 272 HOH HOH . 
N 7 HOH B 111 280 280 HOH HOH . 
N 7 HOH B 112 283 283 HOH HOH . 
N 7 HOH B 113 284 284 HOH HOH . 
N 7 HOH B 114 293 293 HOH HOH . 
N 7 HOH B 115 304 304 HOH HOH . 
N 7 HOH B 116 307 307 HOH HOH . 
N 7 HOH B 117 312 312 HOH HOH . 
N 7 HOH B 118 313 313 HOH HOH . 
N 7 HOH B 119 314 314 HOH HOH . 
N 7 HOH B 120 328 328 HOH HOH . 
N 7 HOH B 121 331 331 HOH HOH . 
N 7 HOH B 122 336 336 HOH HOH . 
N 7 HOH B 123 337 337 HOH HOH . 
N 7 HOH B 124 341 341 HOH HOH . 
N 7 HOH B 125 342 342 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 19.61 0.544 31.523 1 36.78 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . H 4 19.922 1.583 32.425 1 46.72 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . H 4 18.087 0.352 31.429 1 27.69 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . H 4 17.721 -0.623 32.449 1 57.64 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . H 4 17.621 -0.074 30.071 1 25.01 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . H 4 17.232 -1.403 30.022 1 59.69 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#