data_3NE7 # _model_server_result.job_id -npj6fqlL8zHaF6odgsA4w _model_server_result.datetime_utc '2025-07-03 01:50:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ne7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":161}' # _entry.id 3NE7 # _exptl.entry_id 3NE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NE7 _cell.length_a 69.224 _cell.length_b 69.224 _cell.length_c 90.628 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C ILE 114 A ILE 114 1_555 A N MSE 115 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C MSE 115 A MSE 115 1_555 A N LYS 116 A LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ILE 154 A ILE 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 155 A MSE 155 1_555 A N GLU 156 A GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 C S1P COA . A COA 161 1_555 D S2 BME . A BME 162 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc1 A NE2 HIS 100 A HIS 100 1_555 B NI NI . A NI 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 B NI NI . A NI 160 1_555 C O8A COA . A COA 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 79 n y N1A C6A COA doub 80 n y C2A N3A COA doub 81 n y C2A H2A COA sing 82 n n N3A C4A COA sing 83 n y C4A C5A COA doub 84 n y C4A N9A COA sing 85 n y C5A C6A COA sing 86 n y C5A N7A COA sing 87 n y C6A N6A COA sing 88 n n N6A H61A COA sing 89 n n N6A H62A COA sing 90 n n N7A C8A COA doub 91 n y C8A N9A COA sing 92 n y C8A H8A COA sing 93 n n N9A C1B COA sing 94 n n C1B C2B COA sing 95 n n C1B O4B COA sing 96 n n C1B H1B COA sing 97 n n C2B O2B COA sing 98 n n C2B C3B COA sing 99 n n C2B H2B COA sing 100 n n O2B HO2A COA sing 101 n n C3B O3B COA sing 102 n n C3B C4B COA sing 103 n n C3B H3B COA sing 104 n n O3B P3B COA sing 105 n n P3B O7A COA doub 106 n n P3B O8A COA sing 107 n n P3B O9A COA sing 108 n n O8A HOA8 COA sing 109 n n O9A HOA9 COA sing 110 n n C4B O4B COA sing 111 n n C4B C5B COA sing 112 n n C4B H4B COA sing 113 n n C5B O5B COA sing 114 n n C5B H51A COA sing 115 n n C5B H52A COA sing 116 n n O5B P1A COA sing 117 n n P1A O1A COA doub 118 n n P1A O2A COA sing 119 n n P1A O3A COA sing 120 n n O2A HOA2 COA sing 121 n n O3A P2A COA sing 122 n n P2A O4A COA doub 123 n n P2A O5A COA sing 124 n n P2A O6A COA sing 125 n n O5A HOA5 COA sing 126 n n O6A CCP COA sing 127 n n CBP CCP COA sing 128 n n CBP CDP COA sing 129 n n CBP CEP COA sing 130 n n CBP CAP COA sing 131 n n CCP H121 COA sing 132 n n CCP H122 COA sing 133 n n CDP H131 COA sing 134 n n CDP H132 COA sing 135 n n CDP H133 COA sing 136 n n CEP H141 COA sing 137 n n CEP H142 COA sing 138 n n CEP H143 COA sing 139 n n CAP OAP COA sing 140 n n CAP C9P COA sing 141 n n CAP H10 COA sing 142 n n OAP HO1 COA sing 143 n n C9P O9P COA doub 144 n n C9P N8P COA sing 145 n n N8P C7P COA sing 146 n n N8P HN8 COA sing 147 n n C7P C6P COA sing 148 n n C7P H71 COA sing 149 n n C7P H72 COA sing 150 n n C6P C5P COA sing 151 n n C6P H61 COA sing 152 n n C6P H62 COA sing 153 n n C5P O5P COA doub 154 n n C5P N4P COA sing 155 n n N4P C3P COA sing 156 n n N4P HN4 COA sing 157 n n C3P C2P COA sing 158 n n C3P H31 COA sing 159 n n C3P H32 COA sing 160 n n C2P S1P COA sing 161 n n C2P H21 COA sing 162 n n C2P H22 COA sing 163 n n S1P HS1 COA sing 164 n n # _atom_sites.entry_id 3NE7 _atom_sites.fract_transf_matrix[1][1] 0.014446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 160 160 NI NI . C 3 COA A 1 161 161 COA COA . D 4 BME A 1 162 162 BME BME . E 4 BME A 1 163 163 BME BME . F 5 SO4 A 1 164 164 SO4 SO4 . G 6 GOL A 1 165 165 GOL GOL . H 7 UNL A 1 166 166 UNL UNL . I 8 HOH A 1 167 167 HOH HOH . I 8 HOH A 2 168 168 HOH HOH . I 8 HOH A 3 169 169 HOH HOH . I 8 HOH A 4 170 170 HOH HOH . I 8 HOH A 5 171 171 HOH HOH . I 8 HOH A 6 172 172 HOH HOH . I 8 HOH A 7 173 173 HOH HOH . I 8 HOH A 8 174 174 HOH HOH . I 8 HOH A 9 175 175 HOH HOH . I 8 HOH A 10 176 176 HOH HOH . I 8 HOH A 11 177 177 HOH HOH . I 8 HOH A 12 178 178 HOH HOH . I 8 HOH A 13 179 179 HOH HOH . I 8 HOH A 14 180 180 HOH HOH . I 8 HOH A 15 181 181 HOH HOH . I 8 HOH A 16 182 182 HOH HOH . I 8 HOH A 17 183 183 HOH HOH . I 8 HOH A 18 184 184 HOH HOH . I 8 HOH A 19 185 185 HOH HOH . I 8 HOH A 20 186 186 HOH HOH . I 8 HOH A 21 187 187 HOH HOH . I 8 HOH A 22 188 188 HOH HOH . I 8 HOH A 23 189 189 HOH HOH . I 8 HOH A 24 190 190 HOH HOH . I 8 HOH A 25 191 191 HOH HOH . I 8 HOH A 26 193 193 HOH HOH . I 8 HOH A 27 194 194 HOH HOH . I 8 HOH A 28 195 195 HOH HOH . I 8 HOH A 29 196 196 HOH HOH . I 8 HOH A 30 197 197 HOH HOH . I 8 HOH A 31 198 198 HOH HOH . I 8 HOH A 32 200 200 HOH HOH . I 8 HOH A 33 201 201 HOH HOH . I 8 HOH A 34 202 202 HOH HOH . I 8 HOH A 35 203 203 HOH HOH . I 8 HOH A 36 204 204 HOH HOH . I 8 HOH A 37 205 205 HOH HOH . I 8 HOH A 38 206 206 HOH HOH . I 8 HOH A 39 207 207 HOH HOH . I 8 HOH A 40 208 208 HOH HOH . I 8 HOH A 41 209 209 HOH HOH . I 8 HOH A 42 210 210 HOH HOH . I 8 HOH A 43 211 211 HOH HOH . I 8 HOH A 44 212 212 HOH HOH . I 8 HOH A 45 213 213 HOH HOH . I 8 HOH A 46 214 214 HOH HOH . I 8 HOH A 47 215 215 HOH HOH . I 8 HOH A 48 216 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 -9.16 -8.311 -3.284 1 26.1 ? N1A COA 161 A 1 HETATM 2 C C2A COA . . . C 3 -10.112 -9.041 -3.914 1 23.94 ? C2A COA 161 A 1 HETATM 3 N N3A COA . . . C 3 -11.436 -8.836 -3.711 1 23.13 ? N3A COA 161 A 1 HETATM 4 C C4A COA . . . C 3 -11.843 -7.863 -2.841 1 24.8 ? C4A COA 161 A 1 HETATM 5 C C5A COA . . . C 3 -10.807 -7.067 -2.146 1 22.47 ? C5A COA 161 A 1 HETATM 6 C C6A COA . . . C 3 -9.482 -7.331 -2.399 1 24.91 ? C6A COA 161 A 1 HETATM 7 N N6A COA . . . C 3 -8.524 -6.615 -1.774 1 25.44 ? N6A COA 161 A 1 HETATM 8 N N7A COA . . . C 3 -11.453 -6.187 -1.38 1 23.97 ? N7A COA 161 A 1 HETATM 9 C C8A COA . . . C 3 -12.783 -6.392 -1.538 1 23.84 ? C8A COA 161 A 1 HETATM 10 N N9A COA . . . C 3 -13.031 -7.382 -2.408 1 23.63 ? N9A COA 161 A 1 HETATM 11 C C1B COA . . . C 3 -14.382 -7.808 -2.845 1 23.05 ? C1B COA 161 A 1 HETATM 12 C C2B COA . . . C 3 -14.626 -9.309 -2.766 1 23.83 ? C2B COA 161 A 1 HETATM 13 O O2B COA . . . C 3 -15.62 -9.679 -3.743 1 24.96 ? O2B COA 161 A 1 HETATM 14 C C3B COA . . . C 3 -15.063 -9.426 -1.314 1 21.71 ? C3B COA 161 A 1 HETATM 15 O O3B COA . . . C 3 -15.817 -10.553 -0.972 1 19.91 ? O3B COA 161 A 1 HETATM 16 P P3B COA . . . C 3 -15.127 -11.884 -0.388 1 21.93 ? P3B COA 161 A 1 HETATM 17 O O7A COA . . . C 3 -15.045 -11.721 1.129 1 21.9 ? O7A COA 161 A 1 HETATM 18 O O8A COA . . . C 3 -13.81 -12.032 -1.08 1 20.69 ? O8A COA 161 A 1 HETATM 19 O O9A COA . . . C 3 -16.135 -12.893 -0.797 1 19.15 ? O9A COA 161 A 1 HETATM 20 C C4B COA . . . C 3 -15.85 -8.16 -1.07 1 21.42 ? C4B COA 161 A 1 HETATM 21 O O4B COA . . . C 3 -15.368 -7.202 -2.008 1 21.75 ? O4B COA 161 A 1 HETATM 22 C C5B COA . . . C 3 -15.667 -7.649 0.359 1 23.22 ? C5B COA 161 A 1 HETATM 23 O O5B COA . . . C 3 -16.59 -6.57 0.573 1 22.06 ? O5B COA 161 A 1 HETATM 24 P P1A COA . . . C 3 -16.21 -5.275 1.382 1 22.88 ? P1A COA 161 A 1 HETATM 25 O O1A COA . . . C 3 -15.206 -5.597 2.458 1 25.38 ? O1A COA 161 A 1 HETATM 26 O O2A COA . . . C 3 -17.523 -4.687 1.734 1 22.83 ? O2A COA 161 A 1 HETATM 27 O O3A COA . . . C 3 -15.503 -4.42 0.217 1 22.78 ? O3A COA 161 A 1 HETATM 28 P P2A COA . . . C 3 -14.623 -3.078 0.36 1 19.81 ? P2A COA 161 A 1 HETATM 29 O O4A COA . . . C 3 -13.196 -3.441 -0.068 1 18.51 ? O4A COA 161 A 1 HETATM 30 O O5A COA . . . C 3 -14.828 -2.448 1.735 1 22.41 ? O5A COA 161 A 1 HETATM 31 O O6A COA . . . C 3 -15.188 -2.118 -0.793 1 20.51 ? O6A COA 161 A 1 HETATM 32 C CBP COA . . . C 3 -14.516 -1.751 -3.112 1 16.65 ? CBP COA 161 A 1 HETATM 33 C CCP COA . . . C 3 -15.28 -2.624 -2.155 1 18.15 ? CCP COA 161 A 1 HETATM 34 C CDP COA . . . C 3 -14.799 -2.171 -4.569 1 14.73 ? CDP COA 161 A 1 HETATM 35 C CEP COA . . . C 3 -14.977 -0.337 -2.925 1 13.05 ? CEP COA 161 A 1 HETATM 36 C CAP COA . . . C 3 -13.029 -1.751 -2.714 1 17.74 ? CAP COA 161 A 1 HETATM 37 O OAP COA . . . C 3 -12.558 -3.099 -2.679 1 20.83 ? OAP COA 161 A 1 HETATM 38 C C9P COA . . . C 3 -12.215 -0.891 -3.676 1 20.03 ? C9P COA 161 A 1 HETATM 39 O O9P COA . . . C 3 -12.064 0.306 -3.449 1 18.99 ? O9P COA 161 A 1 HETATM 40 N N8P COA . . . C 3 -11.725 -1.467 -4.767 1 19.02 ? N8P COA 161 A 1 HETATM 41 C C7P COA . . . C 3 -10.917 -0.828 -5.811 1 23.16 ? C7P COA 161 A 1 HETATM 42 C C6P COA . . . C 3 -11.713 0.194 -6.638 1 23.66 ? C6P COA 161 A 1 HETATM 43 C C5P COA . . . C 3 -12.935 -0.399 -7.316 1 27.13 ? C5P COA 161 A 1 HETATM 44 O O5P COA . . . C 3 -12.883 -1.499 -7.883 1 30.69 ? O5P COA 161 A 1 HETATM 45 N N4P COA . . . C 3 -14.025 0.358 -7.238 1 26.3 ? N4P COA 161 A 1 HETATM 46 C C3P COA . A . C 3 -15.411 0.185 -7.673 0.5 26.83 ? C3P COA 161 A 1 HETATM 47 C C3P COA . B . C 3 -15.313 0.099 -7.85 0.5 29.63 ? C3P COA 161 A 1 HETATM 48 C C2P COA . A . C 3 -15.458 0.099 -9.188 0.5 29.56 ? C2P COA 161 A 1 HETATM 49 C C2P COA . B . C 3 -14.905 0.253 -9.324 0.5 32.95 ? C2P COA 161 A 1 HETATM 50 S S1P COA . A . C 3 -14.983 1.67 -9.928 0.5 30.52 ? S1P COA 161 A 1 HETATM 51 S S1P COA . B . C 3 -16.296 0.307 -10.469 0.5 37.45 ? S1P COA 161 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #