data_3NE7 # _model_server_result.job_id 9FwC8dWTuAbII2S2RBHBSQ _model_server_result.datetime_utc '2025-07-03 08:49:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ne7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":165}' # _entry.id 3NE7 # _exptl.entry_id 3NE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NE7 _cell.length_a 69.224 _cell.length_b 69.224 _cell.length_c 90.628 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C ILE 114 A ILE 114 1_555 A N MSE 115 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C MSE 115 A MSE 115 1_555 A N LYS 116 A LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ILE 154 A ILE 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 155 A MSE 155 1_555 A N GLU 156 A GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 C S1P COA . A COA 161 1_555 D S2 BME . A BME 162 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc1 A NE2 HIS 100 A HIS 100 1_555 B NI NI . A NI 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 B NI NI . A NI 160 1_555 C O8A COA . A COA 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 224 n n C1 C2 GOL sing 225 n n C1 H11 GOL sing 226 n n C1 H12 GOL sing 227 n n O1 HO1 GOL sing 228 n n C2 O2 GOL sing 229 n n C2 C3 GOL sing 230 n n C2 H2 GOL sing 231 n n O2 HO2 GOL sing 232 n n C3 O3 GOL sing 233 n n C3 H31 GOL sing 234 n n C3 H32 GOL sing 235 n n O3 HO3 GOL sing 236 n n # _atom_sites.entry_id 3NE7 _atom_sites.fract_transf_matrix[1][1] 0.014446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 160 160 NI NI . C 3 COA A 1 161 161 COA COA . D 4 BME A 1 162 162 BME BME . E 4 BME A 1 163 163 BME BME . F 5 SO4 A 1 164 164 SO4 SO4 . G 6 GOL A 1 165 165 GOL GOL . H 7 UNL A 1 166 166 UNL UNL . I 8 HOH A 1 167 167 HOH HOH . I 8 HOH A 2 168 168 HOH HOH . I 8 HOH A 3 169 169 HOH HOH . I 8 HOH A 4 170 170 HOH HOH . I 8 HOH A 5 171 171 HOH HOH . I 8 HOH A 6 172 172 HOH HOH . I 8 HOH A 7 173 173 HOH HOH . I 8 HOH A 8 174 174 HOH HOH . I 8 HOH A 9 175 175 HOH HOH . I 8 HOH A 10 176 176 HOH HOH . I 8 HOH A 11 177 177 HOH HOH . I 8 HOH A 12 178 178 HOH HOH . I 8 HOH A 13 179 179 HOH HOH . I 8 HOH A 14 180 180 HOH HOH . I 8 HOH A 15 181 181 HOH HOH . I 8 HOH A 16 182 182 HOH HOH . I 8 HOH A 17 183 183 HOH HOH . I 8 HOH A 18 184 184 HOH HOH . I 8 HOH A 19 185 185 HOH HOH . I 8 HOH A 20 186 186 HOH HOH . I 8 HOH A 21 187 187 HOH HOH . I 8 HOH A 22 188 188 HOH HOH . I 8 HOH A 23 189 189 HOH HOH . I 8 HOH A 24 190 190 HOH HOH . I 8 HOH A 25 191 191 HOH HOH . I 8 HOH A 26 193 193 HOH HOH . I 8 HOH A 27 194 194 HOH HOH . I 8 HOH A 28 195 195 HOH HOH . I 8 HOH A 29 196 196 HOH HOH . I 8 HOH A 30 197 197 HOH HOH . I 8 HOH A 31 198 198 HOH HOH . I 8 HOH A 32 200 200 HOH HOH . I 8 HOH A 33 201 201 HOH HOH . I 8 HOH A 34 202 202 HOH HOH . I 8 HOH A 35 203 203 HOH HOH . I 8 HOH A 36 204 204 HOH HOH . I 8 HOH A 37 205 205 HOH HOH . I 8 HOH A 38 206 206 HOH HOH . I 8 HOH A 39 207 207 HOH HOH . I 8 HOH A 40 208 208 HOH HOH . I 8 HOH A 41 209 209 HOH HOH . I 8 HOH A 42 210 210 HOH HOH . I 8 HOH A 43 211 211 HOH HOH . I 8 HOH A 44 212 212 HOH HOH . I 8 HOH A 45 213 213 HOH HOH . I 8 HOH A 46 214 214 HOH HOH . I 8 HOH A 47 215 215 HOH HOH . I 8 HOH A 48 216 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -19.556 -7.215 0.273 1 35.02 ? C1 GOL 165 A 1 HETATM 2 O O1 GOL . . . G 6 -19.802 -6.009 0.975 1 31.87 ? O1 GOL 165 A 1 HETATM 3 C C2 GOL . . . G 6 -19.934 -8.449 1.085 1 37.25 ? C2 GOL 165 A 1 HETATM 4 O O2 GOL . . . G 6 -20.152 -8.121 2.421 1 36.45 ? O2 GOL 165 A 1 HETATM 5 C C3 GOL . . . G 6 -18.957 -9.604 0.885 1 37.86 ? C3 GOL 165 A 1 HETATM 6 O O3 GOL . . . G 6 -18.87 -10.422 2.035 1 40.02 ? O3 GOL 165 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #