data_3NEE # _model_server_result.job_id jDWh57rOlLyLk8lagt3XPQ _model_server_result.datetime_utc '2024-11-14 15:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3NEE # _exptl.entry_id 3NEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NEE _cell.length_a 43.516 _cell.length_b 85.161 _cell.length_c 64.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -43.516 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C20 H24 O4' _chem_comp.formula_weight 328.402 _chem_comp.id B72 _chem_comp.mon_nstd_flag . _chem_comp.name '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O2 B72 doub 70 n n C20 O1 B72 sing 71 n n C19 C20 B72 sing 72 n n C19 H119 B72 sing 73 n n C19 H219 B72 sing 74 n n O3 C19 B72 sing 75 n n C1 O3 B72 sing 76 n n C2 C1 B72 sing 77 n y C2 H2 B72 sing 78 n n C3 C2 B72 doub 79 n y C17 C3 B72 sing 80 n n C17 H117 B72 sing 81 n n C17 H217 B72 sing 82 n n C17 H317 B72 sing 83 n n C4 C5 B72 doub 84 n y C4 C3 B72 sing 85 n y C5 C6 B72 sing 86 n y C6 C1 B72 doub 87 n y C6 H6 B72 sing 88 n n C18 C5 B72 sing 89 n n C18 H118 B72 sing 90 n n C18 H218 B72 sing 91 n n C18 H318 B72 sing 92 n n C7 C4 B72 sing 93 n n C7 H17 B72 sing 94 n n C7 H27 B72 sing 95 n n C8 C9 B72 sing 96 n y C8 C7 B72 sing 97 n n C13 C8 B72 doub 98 n y C13 H13 B72 sing 99 n n C12 C11 B72 doub 100 n y C12 C13 B72 sing 101 n y C14 C12 B72 sing 102 n n C14 C15 B72 sing 103 n n C14 H14 B72 sing 104 n n C16 C14 B72 sing 105 n n C16 H116 B72 sing 106 n n C16 H216 B72 sing 107 n n C16 H316 B72 sing 108 n n C15 H115 B72 sing 109 n n C15 H215 B72 sing 110 n n C15 H315 B72 sing 111 n n C11 C10 B72 sing 112 n y O4 C11 B72 sing 113 n n O4 HO4 B72 sing 114 n n C10 C9 B72 doub 115 n y C10 H10 B72 sing 116 n n C9 H9 B72 sing 117 n n O1 H24 B72 sing 118 n n # _atom_sites.entry_id 3NEE _atom_sites.fract_transf_matrix[1][1] 0.02298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B72 A 1 1 1 B72 B72 . D 3 GOL A 1 126 1 GOL GOL . E 2 B72 B 1 1 1 B72 B72 . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 3 3 HOH HOH . F 4 HOH A 3 5 5 HOH HOH . F 4 HOH A 4 7 7 HOH HOH . F 4 HOH A 5 9 9 HOH HOH . F 4 HOH A 6 127 11 HOH HOH . F 4 HOH A 7 128 12 HOH HOH . F 4 HOH A 8 129 129 HOH HOH . F 4 HOH A 9 130 13 HOH HOH . F 4 HOH A 10 131 131 HOH HOH . F 4 HOH A 11 132 132 HOH HOH . F 4 HOH A 12 133 133 HOH HOH . F 4 HOH A 13 134 134 HOH HOH . F 4 HOH A 14 135 135 HOH HOH . F 4 HOH A 15 136 136 HOH HOH . F 4 HOH A 16 137 14 HOH HOH . F 4 HOH A 17 138 16 HOH HOH . F 4 HOH A 18 139 18 HOH HOH . F 4 HOH A 19 140 22 HOH HOH . F 4 HOH A 20 141 23 HOH HOH . F 4 HOH A 21 142 26 HOH HOH . F 4 HOH A 22 143 27 HOH HOH . F 4 HOH A 23 144 30 HOH HOH . F 4 HOH A 24 145 31 HOH HOH . F 4 HOH A 25 146 32 HOH HOH . F 4 HOH A 26 147 34 HOH HOH . F 4 HOH A 27 148 35 HOH HOH . F 4 HOH A 28 149 36 HOH HOH . F 4 HOH A 29 150 37 HOH HOH . F 4 HOH A 30 151 40 HOH HOH . F 4 HOH A 31 152 43 HOH HOH . F 4 HOH A 32 153 153 HOH HOH . F 4 HOH A 33 154 44 HOH HOH . F 4 HOH A 34 155 45 HOH HOH . F 4 HOH A 35 156 47 HOH HOH . F 4 HOH A 36 157 48 HOH HOH . F 4 HOH A 37 158 158 HOH HOH . F 4 HOH A 38 159 50 HOH HOH . F 4 HOH A 39 160 52 HOH HOH . F 4 HOH A 40 161 53 HOH HOH . F 4 HOH A 41 162 54 HOH HOH . F 4 HOH A 42 163 56 HOH HOH . F 4 HOH A 43 164 57 HOH HOH . F 4 HOH A 44 165 59 HOH HOH . F 4 HOH A 45 166 166 HOH HOH . F 4 HOH A 46 167 60 HOH HOH . F 4 HOH A 47 168 63 HOH HOH . F 4 HOH A 48 169 64 HOH HOH . F 4 HOH A 49 170 66 HOH HOH . F 4 HOH A 50 171 67 HOH HOH . F 4 HOH A 51 172 68 HOH HOH . F 4 HOH A 52 173 69 HOH HOH . F 4 HOH A 53 174 174 HOH HOH . F 4 HOH A 54 175 71 HOH HOH . F 4 HOH A 55 176 72 HOH HOH . F 4 HOH A 56 177 73 HOH HOH . F 4 HOH A 57 178 74 HOH HOH . F 4 HOH A 58 179 75 HOH HOH . F 4 HOH A 59 180 180 HOH HOH . F 4 HOH A 60 181 181 HOH HOH . F 4 HOH A 61 182 182 HOH HOH . F 4 HOH A 62 183 80 HOH HOH . F 4 HOH A 63 184 83 HOH HOH . F 4 HOH A 64 185 84 HOH HOH . F 4 HOH A 65 186 89 HOH HOH . F 4 HOH A 66 187 90 HOH HOH . F 4 HOH A 67 188 93 HOH HOH . F 4 HOH A 68 189 189 HOH HOH . F 4 HOH A 69 190 95 HOH HOH . F 4 HOH A 70 191 99 HOH HOH . F 4 HOH A 71 192 101 HOH HOH . F 4 HOH A 72 193 102 HOH HOH . F 4 HOH A 73 194 103 HOH HOH . F 4 HOH A 74 195 195 HOH HOH . F 4 HOH A 75 196 104 HOH HOH . F 4 HOH A 76 197 106 HOH HOH . F 4 HOH A 77 198 110 HOH HOH . F 4 HOH A 78 199 199 HOH HOH . F 4 HOH A 79 200 111 HOH HOH . F 4 HOH A 80 201 119 HOH HOH . F 4 HOH A 81 202 121 HOH HOH . F 4 HOH A 82 203 122 HOH HOH . F 4 HOH A 83 204 204 HOH HOH . F 4 HOH A 84 205 205 HOH HOH . F 4 HOH A 85 206 125 HOH HOH . F 4 HOH A 86 207 126 HOH HOH . F 4 HOH A 87 211 211 HOH HOH . G 4 HOH B 1 4 4 HOH HOH . G 4 HOH B 2 6 6 HOH HOH . G 4 HOH B 3 8 8 HOH HOH . G 4 HOH B 4 126 1 HOH HOH . G 4 HOH B 5 127 10 HOH HOH . G 4 HOH B 6 128 128 HOH HOH . G 4 HOH B 7 129 15 HOH HOH . G 4 HOH B 8 130 130 HOH HOH . G 4 HOH B 9 131 17 HOH HOH . G 4 HOH B 10 132 19 HOH HOH . G 4 HOH B 11 133 20 HOH HOH . G 4 HOH B 12 134 21 HOH HOH . G 4 HOH B 13 135 24 HOH HOH . G 4 HOH B 14 136 25 HOH HOH . G 4 HOH B 15 137 137 HOH HOH . G 4 HOH B 16 138 28 HOH HOH . G 4 HOH B 17 139 29 HOH HOH . G 4 HOH B 18 140 140 HOH HOH . G 4 HOH B 19 141 39 HOH HOH . G 4 HOH B 20 142 41 HOH HOH . G 4 HOH B 21 143 42 HOH HOH . G 4 HOH B 22 144 144 HOH HOH . G 4 HOH B 23 145 145 HOH HOH . G 4 HOH B 24 146 146 HOH HOH . G 4 HOH B 25 147 46 HOH HOH . G 4 HOH B 26 148 49 HOH HOH . G 4 HOH B 27 149 51 HOH HOH . G 4 HOH B 28 150 150 HOH HOH . G 4 HOH B 29 151 151 HOH HOH . G 4 HOH B 30 152 152 HOH HOH . G 4 HOH B 31 153 55 HOH HOH . G 4 HOH B 32 154 154 HOH HOH . G 4 HOH B 33 155 61 HOH HOH . G 4 HOH B 34 156 62 HOH HOH . G 4 HOH B 35 157 65 HOH HOH . G 4 HOH B 36 158 70 HOH HOH . G 4 HOH B 37 159 77 HOH HOH . G 4 HOH B 38 160 78 HOH HOH . G 4 HOH B 39 161 161 HOH HOH . G 4 HOH B 40 162 162 HOH HOH . G 4 HOH B 41 163 81 HOH HOH . G 4 HOH B 42 164 82 HOH HOH . G 4 HOH B 43 165 86 HOH HOH . G 4 HOH B 44 166 87 HOH HOH . G 4 HOH B 45 167 167 HOH HOH . G 4 HOH B 46 168 94 HOH HOH . G 4 HOH B 47 169 169 HOH HOH . G 4 HOH B 48 170 96 HOH HOH . G 4 HOH B 49 171 98 HOH HOH . G 4 HOH B 50 172 107 HOH HOH . G 4 HOH B 51 173 173 HOH HOH . G 4 HOH B 52 174 108 HOH HOH . G 4 HOH B 53 175 109 HOH HOH . G 4 HOH B 54 176 176 HOH HOH . G 4 HOH B 55 177 177 HOH HOH . G 4 HOH B 56 178 178 HOH HOH . G 4 HOH B 57 179 118 HOH HOH . G 4 HOH B 58 180 120 HOH HOH . G 4 HOH B 59 183 183 HOH HOH . G 4 HOH B 60 184 184 HOH HOH . G 4 HOH B 61 186 186 HOH HOH . G 4 HOH B 62 190 190 HOH HOH . G 4 HOH B 63 191 191 HOH HOH . G 4 HOH B 64 196 196 HOH HOH . G 4 HOH B 65 201 201 HOH HOH . G 4 HOH B 66 203 203 HOH HOH . G 4 HOH B 67 206 206 HOH HOH . G 4 HOH B 68 207 207 HOH HOH . G 4 HOH B 69 208 208 HOH HOH . G 4 HOH B 70 209 209 HOH HOH . G 4 HOH B 71 210 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B72 . . . E 2 -23.553 -2.85 -35.048 0.5 35.65 ? O1 B72 1 B 1 HETATM 2 C C20 B72 . . . E 2 -22.874 -1.877 -34.653 0.5 34.66 ? C20 B72 1 B 1 HETATM 3 O O2 B72 . . . E 2 -23.139 -0.677 -34.909 0.5 35.02 ? O2 B72 1 B 1 HETATM 4 C C19 B72 . . . E 2 -21.641 -2.179 -33.804 0.5 32.88 ? C19 B72 1 B 1 HETATM 5 O O3 B72 . . . E 2 -21.012 -0.953 -33.425 0.5 30.46 ? O3 B72 1 B 1 HETATM 6 C C1 B72 . . . E 2 -21.392 -0.606 -32.161 0.5 27.38 ? C1 B72 1 B 1 HETATM 7 C C2 B72 . . . E 2 -20.774 0.464 -31.526 0.5 26.07 ? C2 B72 1 B 1 HETATM 8 C C3 B72 . . . E 2 -21.148 0.82 -30.236 0.5 24.26 ? C3 B72 1 B 1 HETATM 9 C C17 B72 . . . E 2 -20.472 2.001 -29.53 0.5 24.63 ? C17 B72 1 B 1 HETATM 10 C C4 B72 . . . E 2 -22.146 0.115 -29.574 0.5 23.42 ? C4 B72 1 B 1 HETATM 11 C C5 B72 . . . E 2 -22.766 -0.95 -30.22 0.5 23.72 ? C5 B72 1 B 1 HETATM 12 C C6 B72 . . . E 2 -22.392 -1.321 -31.508 0.5 25.64 ? C6 B72 1 B 1 HETATM 13 C C18 B72 . . . E 2 -23.863 -1.727 -29.482 0.5 24.36 ? C18 B72 1 B 1 HETATM 14 C C7 B72 . . . E 2 -22.581 0.497 -28.171 0.5 21.67 ? C7 B72 1 B 1 HETATM 15 C C8 B72 . . . E 2 -21.724 -0.189 -27.11 0.5 20.86 ? C8 B72 1 B 1 HETATM 16 C C13 B72 . . . E 2 -21.803 0.287 -25.819 0.5 20.79 ? C13 B72 1 B 1 HETATM 17 C C12 B72 . . . E 2 -21.055 -0.297 -24.811 0.5 20.8 ? C12 B72 1 B 1 HETATM 18 C C14 B72 . . . E 2 -21.157 0.243 -23.378 0.5 21.87 ? C14 B72 1 B 1 HETATM 19 C C16 B72 . . . E 2 -21.769 1.647 -23.412 0.5 23.32 ? C16 B72 1 B 1 HETATM 20 C C15 B72 . . . E 2 -22.047 -0.674 -22.54 0.5 22.9 ? C15 B72 1 B 1 HETATM 21 C C11 B72 . . . E 2 -20.216 -1.359 -25.108 0.5 20.02 ? C11 B72 1 B 1 HETATM 22 O O4 B72 . . . E 2 -19.494 -1.897 -24.098 0.5 21.66 ? O4 B72 1 B 1 HETATM 23 C C10 B72 . . . E 2 -20.126 -1.858 -26.407 0.5 18.95 ? C10 B72 1 B 1 HETATM 24 C C9 B72 . . . E 2 -20.878 -1.267 -27.42 0.5 19.63 ? C9 B72 1 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #