data_3NEE
#
_model_server_result.job_id            EUIQZBb1Ne9Xayki5O1IUA 
_model_server_result.datetime_utc      '2024-11-14 15:38:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nee 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":126}' 
#
_entry.id    3NEE 
#
_exptl.entry_id    3NEE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NEE 
_cell.length_a            43.516 
_cell.length_b            85.161 
_cell.length_c            64.044 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NEE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -43.516 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 159 n n 
C1 C2 GOL sing 160 n n 
C1 H11 GOL sing 161 n n 
C1 H12 GOL sing 162 n n 
O1 HO1 GOL sing 163 n n 
C2 O2 GOL sing 164 n n 
C2 C3 GOL sing 165 n n 
C2 H2 GOL sing 166 n n 
O2 HO2 GOL sing 167 n n 
C3 O3 GOL sing 168 n n 
C3 H31 GOL sing 169 n n 
C3 H32 GOL sing 170 n n 
O3 HO3 GOL sing 171 n n 
#
_atom_sites.entry_id                     3NEE 
_atom_sites.fract_transf_matrix[1][1]    0.02298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B72 A 1 1 1 B72 B72 . 
D 3 GOL A 1 126 1 GOL GOL . 
E 2 B72 B 1 1 1 B72 B72 . 
F 4 HOH A 1 2 2 HOH HOH . 
F 4 HOH A 2 3 3 HOH HOH . 
F 4 HOH A 3 5 5 HOH HOH . 
F 4 HOH A 4 7 7 HOH HOH . 
F 4 HOH A 5 9 9 HOH HOH . 
F 4 HOH A 6 127 11 HOH HOH . 
F 4 HOH A 7 128 12 HOH HOH . 
F 4 HOH A 8 129 129 HOH HOH . 
F 4 HOH A 9 130 13 HOH HOH . 
F 4 HOH A 10 131 131 HOH HOH . 
F 4 HOH A 11 132 132 HOH HOH . 
F 4 HOH A 12 133 133 HOH HOH . 
F 4 HOH A 13 134 134 HOH HOH . 
F 4 HOH A 14 135 135 HOH HOH . 
F 4 HOH A 15 136 136 HOH HOH . 
F 4 HOH A 16 137 14 HOH HOH . 
F 4 HOH A 17 138 16 HOH HOH . 
F 4 HOH A 18 139 18 HOH HOH . 
F 4 HOH A 19 140 22 HOH HOH . 
F 4 HOH A 20 141 23 HOH HOH . 
F 4 HOH A 21 142 26 HOH HOH . 
F 4 HOH A 22 143 27 HOH HOH . 
F 4 HOH A 23 144 30 HOH HOH . 
F 4 HOH A 24 145 31 HOH HOH . 
F 4 HOH A 25 146 32 HOH HOH . 
F 4 HOH A 26 147 34 HOH HOH . 
F 4 HOH A 27 148 35 HOH HOH . 
F 4 HOH A 28 149 36 HOH HOH . 
F 4 HOH A 29 150 37 HOH HOH . 
F 4 HOH A 30 151 40 HOH HOH . 
F 4 HOH A 31 152 43 HOH HOH . 
F 4 HOH A 32 153 153 HOH HOH . 
F 4 HOH A 33 154 44 HOH HOH . 
F 4 HOH A 34 155 45 HOH HOH . 
F 4 HOH A 35 156 47 HOH HOH . 
F 4 HOH A 36 157 48 HOH HOH . 
F 4 HOH A 37 158 158 HOH HOH . 
F 4 HOH A 38 159 50 HOH HOH . 
F 4 HOH A 39 160 52 HOH HOH . 
F 4 HOH A 40 161 53 HOH HOH . 
F 4 HOH A 41 162 54 HOH HOH . 
F 4 HOH A 42 163 56 HOH HOH . 
F 4 HOH A 43 164 57 HOH HOH . 
F 4 HOH A 44 165 59 HOH HOH . 
F 4 HOH A 45 166 166 HOH HOH . 
F 4 HOH A 46 167 60 HOH HOH . 
F 4 HOH A 47 168 63 HOH HOH . 
F 4 HOH A 48 169 64 HOH HOH . 
F 4 HOH A 49 170 66 HOH HOH . 
F 4 HOH A 50 171 67 HOH HOH . 
F 4 HOH A 51 172 68 HOH HOH . 
F 4 HOH A 52 173 69 HOH HOH . 
F 4 HOH A 53 174 174 HOH HOH . 
F 4 HOH A 54 175 71 HOH HOH . 
F 4 HOH A 55 176 72 HOH HOH . 
F 4 HOH A 56 177 73 HOH HOH . 
F 4 HOH A 57 178 74 HOH HOH . 
F 4 HOH A 58 179 75 HOH HOH . 
F 4 HOH A 59 180 180 HOH HOH . 
F 4 HOH A 60 181 181 HOH HOH . 
F 4 HOH A 61 182 182 HOH HOH . 
F 4 HOH A 62 183 80 HOH HOH . 
F 4 HOH A 63 184 83 HOH HOH . 
F 4 HOH A 64 185 84 HOH HOH . 
F 4 HOH A 65 186 89 HOH HOH . 
F 4 HOH A 66 187 90 HOH HOH . 
F 4 HOH A 67 188 93 HOH HOH . 
F 4 HOH A 68 189 189 HOH HOH . 
F 4 HOH A 69 190 95 HOH HOH . 
F 4 HOH A 70 191 99 HOH HOH . 
F 4 HOH A 71 192 101 HOH HOH . 
F 4 HOH A 72 193 102 HOH HOH . 
F 4 HOH A 73 194 103 HOH HOH . 
F 4 HOH A 74 195 195 HOH HOH . 
F 4 HOH A 75 196 104 HOH HOH . 
F 4 HOH A 76 197 106 HOH HOH . 
F 4 HOH A 77 198 110 HOH HOH . 
F 4 HOH A 78 199 199 HOH HOH . 
F 4 HOH A 79 200 111 HOH HOH . 
F 4 HOH A 80 201 119 HOH HOH . 
F 4 HOH A 81 202 121 HOH HOH . 
F 4 HOH A 82 203 122 HOH HOH . 
F 4 HOH A 83 204 204 HOH HOH . 
F 4 HOH A 84 205 205 HOH HOH . 
F 4 HOH A 85 206 125 HOH HOH . 
F 4 HOH A 86 207 126 HOH HOH . 
F 4 HOH A 87 211 211 HOH HOH . 
G 4 HOH B 1 4 4 HOH HOH . 
G 4 HOH B 2 6 6 HOH HOH . 
G 4 HOH B 3 8 8 HOH HOH . 
G 4 HOH B 4 126 1 HOH HOH . 
G 4 HOH B 5 127 10 HOH HOH . 
G 4 HOH B 6 128 128 HOH HOH . 
G 4 HOH B 7 129 15 HOH HOH . 
G 4 HOH B 8 130 130 HOH HOH . 
G 4 HOH B 9 131 17 HOH HOH . 
G 4 HOH B 10 132 19 HOH HOH . 
G 4 HOH B 11 133 20 HOH HOH . 
G 4 HOH B 12 134 21 HOH HOH . 
G 4 HOH B 13 135 24 HOH HOH . 
G 4 HOH B 14 136 25 HOH HOH . 
G 4 HOH B 15 137 137 HOH HOH . 
G 4 HOH B 16 138 28 HOH HOH . 
G 4 HOH B 17 139 29 HOH HOH . 
G 4 HOH B 18 140 140 HOH HOH . 
G 4 HOH B 19 141 39 HOH HOH . 
G 4 HOH B 20 142 41 HOH HOH . 
G 4 HOH B 21 143 42 HOH HOH . 
G 4 HOH B 22 144 144 HOH HOH . 
G 4 HOH B 23 145 145 HOH HOH . 
G 4 HOH B 24 146 146 HOH HOH . 
G 4 HOH B 25 147 46 HOH HOH . 
G 4 HOH B 26 148 49 HOH HOH . 
G 4 HOH B 27 149 51 HOH HOH . 
G 4 HOH B 28 150 150 HOH HOH . 
G 4 HOH B 29 151 151 HOH HOH . 
G 4 HOH B 30 152 152 HOH HOH . 
G 4 HOH B 31 153 55 HOH HOH . 
G 4 HOH B 32 154 154 HOH HOH . 
G 4 HOH B 33 155 61 HOH HOH . 
G 4 HOH B 34 156 62 HOH HOH . 
G 4 HOH B 35 157 65 HOH HOH . 
G 4 HOH B 36 158 70 HOH HOH . 
G 4 HOH B 37 159 77 HOH HOH . 
G 4 HOH B 38 160 78 HOH HOH . 
G 4 HOH B 39 161 161 HOH HOH . 
G 4 HOH B 40 162 162 HOH HOH . 
G 4 HOH B 41 163 81 HOH HOH . 
G 4 HOH B 42 164 82 HOH HOH . 
G 4 HOH B 43 165 86 HOH HOH . 
G 4 HOH B 44 166 87 HOH HOH . 
G 4 HOH B 45 167 167 HOH HOH . 
G 4 HOH B 46 168 94 HOH HOH . 
G 4 HOH B 47 169 169 HOH HOH . 
G 4 HOH B 48 170 96 HOH HOH . 
G 4 HOH B 49 171 98 HOH HOH . 
G 4 HOH B 50 172 107 HOH HOH . 
G 4 HOH B 51 173 173 HOH HOH . 
G 4 HOH B 52 174 108 HOH HOH . 
G 4 HOH B 53 175 109 HOH HOH . 
G 4 HOH B 54 176 176 HOH HOH . 
G 4 HOH B 55 177 177 HOH HOH . 
G 4 HOH B 56 178 178 HOH HOH . 
G 4 HOH B 57 179 118 HOH HOH . 
G 4 HOH B 58 180 120 HOH HOH . 
G 4 HOH B 59 183 183 HOH HOH . 
G 4 HOH B 60 184 184 HOH HOH . 
G 4 HOH B 61 186 186 HOH HOH . 
G 4 HOH B 62 190 190 HOH HOH . 
G 4 HOH B 63 191 191 HOH HOH . 
G 4 HOH B 64 196 196 HOH HOH . 
G 4 HOH B 65 201 201 HOH HOH . 
G 4 HOH B 66 203 203 HOH HOH . 
G 4 HOH B 67 206 206 HOH HOH . 
G 4 HOH B 68 207 207 HOH HOH . 
G 4 HOH B 69 208 208 HOH HOH . 
G 4 HOH B 70 209 209 HOH HOH . 
G 4 HOH B 71 210 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -43.419 17.511 -5.171 1 37.15 ? C1 GOL 126 A 1 
HETATM 2 O O1 GOL . . . D 3 -44.115 17.095 -4.083 1 35.68 ? O1 GOL 126 A 1 
HETATM 3 C C2 GOL . . . D 3 -43.205 18.987 -4.958 1 36.7 ? C2 GOL 126 A 1 
HETATM 4 O O2 GOL . . . D 3 -42.272 19.451 -5.879 1 38.06 ? O2 GOL 126 A 1 
HETATM 5 C C3 GOL . . . D 3 -44.539 19.534 -5.308 1 36.48 ? C3 GOL 126 A 1 
HETATM 6 O O3 GOL . . . D 3 -45.498 18.476 -5.29 1 40.17 ? O3 GOL 126 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#