data_3NEF # _model_server_result.job_id aeysH3Rd-pCqBA6XM0xjIA _model_server_result.datetime_utc '2025-04-23 08:14:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3NEF # _exptl.entry_id 3NEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NEF _cell.length_a 128.57 _cell.length_b 128.57 _cell.length_c 87.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 277 n n S O1 PYV doub 278 n n S O2 PYV doub 279 n n S C4 PYV sing 280 n n BR C1 PYV sing 281 n n C1 C2 PYV doub 282 n y C1 C6 PYV sing 283 n y N1 C11 PYV sing 284 n n C2 C3 PYV sing 285 n y C2 C10 PYV sing 286 n y N2 C12 PYV doub 287 n y N2 C13 PYV sing 288 n y C3 C4 PYV doub 289 n y C3 C7 PYV sing 290 n y C4 C5 PYV sing 291 n y C5 C6 PYV doub 292 n y C7 C8 PYV doub 293 n y C8 C9 PYV sing 294 n y C9 C10 PYV doub 295 n y C11 C12 PYV sing 296 n n C12 C16 PYV sing 297 n y C13 C14 PYV doub 298 n y C14 C15 PYV sing 299 n y C15 C16 PYV doub 300 n y N1 HN1 PYV sing 301 n n C5 H5 PYV sing 302 n n C6 H6 PYV sing 303 n n C7 H7 PYV sing 304 n n C8 H8 PYV sing 305 n n C9 H9 PYV sing 306 n n C10 H10 PYV sing 307 n n C11 H11 PYV sing 308 n n C11 H11A PYV sing 309 n n C13 H13 PYV sing 310 n n C14 H14 PYV sing 311 n n C15 H15 PYV sing 312 n n C16 H16 PYV sing 313 n n # _atom_sites.entry_id 3NEF _atom_sites.fract_transf_matrix[1][1] 0.007778 _atom_sites.fract_transf_matrix[1][2] 0.004491 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PYV A 1 201 1 PYV PRB . D 3 HOH A 1 202 2 HOH HOH . D 3 HOH A 2 203 3 HOH HOH . D 3 HOH A 3 204 4 HOH HOH . D 3 HOH A 4 205 5 HOH HOH . D 3 HOH A 5 206 6 HOH HOH . D 3 HOH A 6 207 7 HOH HOH . D 3 HOH A 7 208 9 HOH HOH . D 3 HOH A 8 209 10 HOH HOH . D 3 HOH A 9 210 12 HOH HOH . D 3 HOH A 10 211 13 HOH HOH . D 3 HOH A 11 212 16 HOH HOH . D 3 HOH A 12 213 17 HOH HOH . D 3 HOH A 13 214 18 HOH HOH . D 3 HOH A 14 215 20 HOH HOH . D 3 HOH A 15 216 22 HOH HOH . D 3 HOH A 16 217 23 HOH HOH . D 3 HOH A 17 218 24 HOH HOH . D 3 HOH A 18 219 26 HOH HOH . D 3 HOH A 19 220 27 HOH HOH . D 3 HOH A 20 221 28 HOH HOH . D 3 HOH A 21 222 29 HOH HOH . D 3 HOH A 22 223 35 HOH HOH . D 3 HOH A 23 224 38 HOH HOH . D 3 HOH A 24 225 39 HOH HOH . D 3 HOH A 25 226 46 HOH HOH . D 3 HOH A 26 227 49 HOH HOH . D 3 HOH A 27 228 50 HOH HOH . D 3 HOH A 28 229 51 HOH HOH . D 3 HOH A 29 230 52 HOH HOH . D 3 HOH A 30 231 53 HOH HOH . D 3 HOH A 31 232 54 HOH HOH . D 3 HOH A 32 233 56 HOH HOH . D 3 HOH A 33 234 57 HOH HOH . D 3 HOH A 34 235 58 HOH HOH . D 3 HOH A 35 236 61 HOH HOH . D 3 HOH A 36 237 62 HOH HOH . D 3 HOH A 37 238 63 HOH HOH . D 3 HOH A 38 239 64 HOH HOH . D 3 HOH A 39 240 65 HOH HOH . D 3 HOH A 40 241 66 HOH HOH . D 3 HOH A 41 242 67 HOH HOH . D 3 HOH A 42 243 68 HOH HOH . D 3 HOH A 43 244 71 HOH HOH . D 3 HOH A 44 245 72 HOH HOH . D 3 HOH A 45 246 73 HOH HOH . D 3 HOH A 46 247 74 HOH HOH . D 3 HOH A 47 248 75 HOH HOH . D 3 HOH A 48 249 80 HOH HOH . D 3 HOH A 49 250 81 HOH HOH . D 3 HOH A 50 251 84 HOH HOH . D 3 HOH A 51 252 86 HOH HOH . D 3 HOH A 52 253 87 HOH HOH . D 3 HOH A 53 254 88 HOH HOH . D 3 HOH A 54 255 89 HOH HOH . D 3 HOH A 55 256 90 HOH HOH . D 3 HOH A 56 257 93 HOH HOH . D 3 HOH A 57 258 94 HOH HOH . D 3 HOH A 58 259 95 HOH HOH . D 3 HOH A 59 260 99 HOH HOH . D 3 HOH A 60 261 103 HOH HOH . D 3 HOH A 61 262 104 HOH HOH . D 3 HOH A 62 263 105 HOH HOH . D 3 HOH A 63 264 106 HOH HOH . D 3 HOH A 64 265 107 HOH HOH . D 3 HOH A 65 266 108 HOH HOH . D 3 HOH A 66 267 114 HOH HOH . D 3 HOH A 67 268 116 HOH HOH . D 3 HOH A 68 269 118 HOH HOH . D 3 HOH A 69 270 121 HOH HOH . D 3 HOH A 70 271 123 HOH HOH . E 3 HOH B 1 201 1 HOH HOH . E 3 HOH B 2 202 8 HOH HOH . E 3 HOH B 3 203 11 HOH HOH . E 3 HOH B 4 204 14 HOH HOH . E 3 HOH B 5 205 15 HOH HOH . E 3 HOH B 6 206 19 HOH HOH . E 3 HOH B 7 207 21 HOH HOH . E 3 HOH B 8 208 25 HOH HOH . E 3 HOH B 9 209 30 HOH HOH . E 3 HOH B 10 210 31 HOH HOH . E 3 HOH B 11 211 32 HOH HOH . E 3 HOH B 12 212 33 HOH HOH . E 3 HOH B 13 213 34 HOH HOH . E 3 HOH B 14 214 36 HOH HOH . E 3 HOH B 15 215 37 HOH HOH . E 3 HOH B 16 216 40 HOH HOH . E 3 HOH B 17 217 41 HOH HOH . E 3 HOH B 18 218 42 HOH HOH . E 3 HOH B 19 219 43 HOH HOH . E 3 HOH B 20 220 44 HOH HOH . E 3 HOH B 21 221 45 HOH HOH . E 3 HOH B 22 222 47 HOH HOH . E 3 HOH B 23 223 48 HOH HOH . E 3 HOH B 24 224 55 HOH HOH . E 3 HOH B 25 225 59 HOH HOH . E 3 HOH B 26 226 60 HOH HOH . E 3 HOH B 27 227 69 HOH HOH . E 3 HOH B 28 228 70 HOH HOH . E 3 HOH B 29 229 76 HOH HOH . E 3 HOH B 30 230 77 HOH HOH . E 3 HOH B 31 231 78 HOH HOH . E 3 HOH B 32 232 79 HOH HOH . E 3 HOH B 33 233 82 HOH HOH . E 3 HOH B 34 234 83 HOH HOH . E 3 HOH B 35 235 85 HOH HOH . E 3 HOH B 36 236 91 HOH HOH . E 3 HOH B 37 237 92 HOH HOH . E 3 HOH B 38 238 96 HOH HOH . E 3 HOH B 39 239 97 HOH HOH . E 3 HOH B 40 240 98 HOH HOH . E 3 HOH B 41 241 100 HOH HOH . E 3 HOH B 42 242 101 HOH HOH . E 3 HOH B 43 243 102 HOH HOH . E 3 HOH B 44 244 109 HOH HOH . E 3 HOH B 45 245 110 HOH HOH . E 3 HOH B 46 246 111 HOH HOH . E 3 HOH B 47 247 112 HOH HOH . E 3 HOH B 48 248 113 HOH HOH . E 3 HOH B 49 249 115 HOH HOH . E 3 HOH B 50 250 117 HOH HOH . E 3 HOH B 51 251 119 HOH HOH . E 3 HOH B 52 252 120 HOH HOH . E 3 HOH B 53 253 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . A . C 2 -54.961 40.29 -22.255 0.94 44.76 ? S PYV 201 A 1 HETATM 2 BR BR PYV . A . C 2 -60.954 39.897 -24.304 0.94 84.04 ? BR PYV 201 A 1 HETATM 3 C C1 PYV . A . C 2 -59.182 40.119 -23.67 0.94 33.83 ? C1 PYV 201 A 1 HETATM 4 N N1 PYV . A . C 2 -54.959 40.839 -20.742 0.94 43.45 ? N1 PYV 201 A 1 HETATM 5 O O1 PYV . A . C 2 -54.159 41.145 -23.072 0.94 42.02 ? O1 PYV 201 A 1 HETATM 6 C C2 PYV . A . C 2 -58.646 41.464 -23.335 0.94 32.25 ? C2 PYV 201 A 1 HETATM 7 N N2 PYV . A . C 2 -57.302 39.743 -18.086 0.94 34.1 ? N2 PYV 201 A 1 HETATM 8 O O2 PYV . A . C 2 -54.458 38.946 -22.292 0.94 42.47 ? O2 PYV 201 A 1 HETATM 9 C C3 PYV . A . C 2 -57.249 41.563 -22.876 0.94 31.23 ? C3 PYV 201 A 1 HETATM 10 C C4 PYV . A . C 2 -56.465 40.314 -22.766 0.94 30.59 ? C4 PYV 201 A 1 HETATM 11 C C5 PYV . A . C 2 -57.054 39.109 -23.102 0.94 33.12 ? C5 PYV 201 A 1 HETATM 12 C C6 PYV . A . C 2 -58.367 39.007 -23.534 0.94 33.43 ? C6 PYV 201 A 1 HETATM 13 C C7 PYV . A . C 2 -56.733 42.81 -22.575 0.94 35.42 ? C7 PYV 201 A 1 HETATM 14 C C8 PYV . A . C 2 -57.536 43.948 -22.705 0.94 33.02 ? C8 PYV 201 A 1 HETATM 15 C C9 PYV . A . C 2 -58.854 43.853 -23.13 0.94 35.07 ? C9 PYV 201 A 1 HETATM 16 C C10 PYV . A . C 2 -59.409 42.616 -23.457 0.94 34.6 ? C10 PYV 201 A 1 HETATM 17 C C11 PYV . A . C 2 -55.327 40.016 -19.605 0.94 35.52 ? C11 PYV 201 A 1 HETATM 18 C C12 PYV . A . C 2 -56.726 40.391 -19.123 0.94 33.54 ? C12 PYV 201 A 1 HETATM 19 C C13 PYV . A . C 2 -58.528 40.05 -17.634 0.94 36.2 ? C13 PYV 201 A 1 HETATM 20 C C14 PYV . A . C 2 -59.269 41.063 -18.224 0.94 30.22 ? C14 PYV 201 A 1 HETATM 21 C C15 PYV . A . C 2 -58.701 41.743 -19.28 0.94 35.45 ? C15 PYV 201 A 1 HETATM 22 C C16 PYV . A . C 2 -57.429 41.415 -19.728 0.94 35.47 ? C16 PYV 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #