data_3NEG # _model_server_result.job_id cq_uWe3c6tdr-H0Y4_hQiQ _model_server_result.datetime_utc '2024-10-20 20:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3neg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 3NEG # _exptl.entry_id 3NEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NEG _cell.length_a 130.23 _cell.length_b 130.23 _cell.length_c 88.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H13 Br N2 O2 S' _chem_comp.formula_weight 377.256 _chem_comp.id PYV _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Pyrabactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1 PYV sing 277 n n S O1 PYV doub 278 n n S O2 PYV doub 279 n n S C4 PYV sing 280 n n BR C1 PYV sing 281 n n C1 C2 PYV doub 282 n y C1 C6 PYV sing 283 n y N1 C11 PYV sing 284 n n C2 C3 PYV sing 285 n y C2 C10 PYV sing 286 n y N2 C12 PYV doub 287 n y N2 C13 PYV sing 288 n y C3 C4 PYV doub 289 n y C3 C7 PYV sing 290 n y C4 C5 PYV sing 291 n y C5 C6 PYV doub 292 n y C7 C8 PYV doub 293 n y C8 C9 PYV sing 294 n y C9 C10 PYV doub 295 n y C11 C12 PYV sing 296 n n C12 C16 PYV sing 297 n y C13 C14 PYV doub 298 n y C14 C15 PYV sing 299 n y C15 C16 PYV doub 300 n y N1 HN1 PYV sing 301 n n C5 H5 PYV sing 302 n n C6 H6 PYV sing 303 n n C7 H7 PYV sing 304 n n C8 H8 PYV sing 305 n n C9 H9 PYV sing 306 n n C10 H10 PYV sing 307 n n C11 H11 PYV sing 308 n n C11 H11A PYV sing 309 n n C13 H13 PYV sing 310 n n C14 H14 PYV sing 311 n n C15 H15 PYV sing 312 n n C16 H16 PYV sing 313 n n # _atom_sites.entry_id 3NEG _atom_sites.fract_transf_matrix[1][1] 0.007679 _atom_sites.fract_transf_matrix[1][2] 0.004433 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PYV A 1 201 1 PYV PRB . D 3 BR A 1 202 1 BR BR . E 2 PYV B 1 201 1 PYV PRB . F 4 HOH A 1 203 1 HOH HOH . F 4 HOH A 2 204 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S PYV . A . E 2 -34.675 53.756 4.467 0.78 140.86 ? S PYV 201 B 1 HETATM 2 BR BR PYV . A . E 2 -32.321 52.576 10.212 0.78 222.68 ? BR PYV 201 B 1 HETATM 3 C C1 PYV . A . E 2 -33.014 52.861 8.48 0.78 102.71 ? C1 PYV 201 B 1 HETATM 4 N N1 PYV . A . E 2 -35.924 52.796 4.209 0.78 104.04 ? N1 PYV 201 B 1 HETATM 5 O O1 PYV . A . E 2 -33.678 53.52 3.461 0.78 139.65 ? O1 PYV 201 B 1 HETATM 6 C C2 PYV . A . E 2 -32.968 51.756 7.479 0.78 102.38 ? C2 PYV 201 B 1 HETATM 7 N N2 PYV . A . E 2 -38.121 54.132 6.659 0.78 101.49 ? N2 PYV 201 B 1 HETATM 8 O O2 PYV . A . E 2 -35.082 55.137 4.464 0.78 140.75 ? O2 PYV 201 B 1 HETATM 9 C C3 PYV . A . E 2 -33.516 52.031 6.138 0.78 102 ? C3 PYV 201 B 1 HETATM 10 C C4 PYV . A . E 2 -34.072 53.39 5.886 0.78 101.47 ? C4 PYV 201 B 1 HETATM 11 C C5 PYV . A . E 2 -34.068 54.365 6.88 0.78 99.91 ? C5 PYV 201 B 1 HETATM 12 C C6 PYV . A . E 2 -33.556 54.103 8.146 0.78 100.97 ? C6 PYV 201 B 1 HETATM 13 C C7 PYV . A . E 2 -33.488 51.023 5.179 0.78 102.36 ? C7 PYV 201 B 1 HETATM 14 C C8 PYV . A . E 2 -32.946 49.778 5.51 0.78 102.07 ? C8 PYV 201 B 1 HETATM 15 C C9 PYV . A . E 2 -32.428 49.516 6.778 0.78 101.32 ? C9 PYV 201 B 1 HETATM 16 C C10 PYV . A . E 2 -32.438 50.499 7.763 0.78 102.23 ? C10 PYV 201 B 1 HETATM 17 C C11 PYV . A . E 2 -37.245 53.323 4.494 0.78 103.08 ? C11 PYV 201 B 1 HETATM 18 C C12 PYV . A . E 2 -37.524 53.139 5.965 0.78 100.98 ? C12 PYV 201 B 1 HETATM 19 C C13 PYV . A . E 2 -38.383 53.991 7.966 0.78 100.74 ? C13 PYV 201 B 1 HETATM 20 C C14 PYV . A . E 2 -38.048 52.82 8.637 0.78 99.18 ? C14 PYV 201 B 1 HETATM 21 C C15 PYV . A . E 2 -37.436 51.783 7.943 0.78 98.6 ? C15 PYV 201 B 1 HETATM 22 C C16 PYV . A . E 2 -37.171 51.946 6.591 0.78 98.89 ? C16 PYV 201 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #