data_3NEO # _model_server_result.job_id UJsL3AseKLgujKV-RIbzWw _model_server_result.datetime_utc '2025-02-26 00:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3neo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3NEO # _exptl.entry_id 3NEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NEO _cell.length_a 42.77 _cell.length_b 84.91 _cell.length_c 64.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 42.77 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H24 O4' _chem_comp.formula_weight 376.445 _chem_comp.id G24 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GC-24 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAB G24 doub 83 n y CAF CAG G24 sing 84 n y CAF HAF G24 sing 85 n n CAB CAC G24 sing 86 n y CAB HAB G24 sing 87 n n CAC CAD G24 doub 88 n y CAC HAC G24 sing 89 n n CAD CAH G24 sing 90 n y CAD HAD G24 sing 91 n n CAH CAG G24 doub 92 n y CAH HAH G24 sing 93 n n CAG CAQ G24 sing 94 n n CAQ CAP G24 sing 95 n n CAQ HAQ1 G24 sing 96 n n CAQ HAQ2 G24 sing 97 n n CAP CAO G24 doub 98 n y CAP CBA G24 sing 99 n y CAO CAN G24 sing 100 n y CAO HAO G24 sing 101 n n CBA OBC G24 sing 102 n n CBA CAZ G24 doub 103 n y OBC HBC G24 sing 104 n n CAZ CAY G24 sing 105 n y CAZ HAZ G24 sing 106 n n CAY CAN G24 doub 107 n y CAY HAY G24 sing 108 n n CAN CAM G24 sing 109 n n CAM CAL G24 sing 110 n n CAM HAM1 G24 sing 111 n n CAM HAM2 G24 sing 112 n n CAL CAX G24 doub 113 n y CAL CAK G24 sing 114 n y CAX CBB G24 sing 115 n n CAX CAW G24 sing 116 n y CBB HBB1 G24 sing 117 n n CBB HBB2 G24 sing 118 n n CBB HBB3 G24 sing 119 n n CAW CAV G24 doub 120 n y CAW HAW G24 sing 121 n n CAK CAE G24 sing 122 n n CAK CAJ G24 doub 123 n y CAE HAE1 G24 sing 124 n n CAE HAE2 G24 sing 125 n n CAE HAE3 G24 sing 126 n n CAJ CAV G24 sing 127 n y CAJ HAJ G24 sing 128 n n CAV OAU G24 sing 129 n n OAU CAT G24 sing 130 n n CAT CAS G24 sing 131 n n CAT HAT1 G24 sing 132 n n CAT HAT2 G24 sing 133 n n CAS OAR G24 sing 134 n n CAS OAI G24 doub 135 n n OAR HAR G24 sing 136 n n # _atom_sites.entry_id 3NEO _atom_sites.fract_transf_matrix[1][1] 0.023381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G24 A 1 1 1 G24 G24 . D 2 G24 B 1 1 1 G24 G24 . E 3 HOH A 1 5 5 HOH HOH . E 3 HOH A 2 7 7 HOH HOH . E 3 HOH A 3 8 8 HOH HOH . E 3 HOH A 4 126 1 HOH HOH . E 3 HOH A 5 127 10 HOH HOH . E 3 HOH A 6 128 11 HOH HOH . E 3 HOH A 7 129 12 HOH HOH . E 3 HOH A 8 130 130 HOH HOH . E 3 HOH A 9 131 18 HOH HOH . E 3 HOH A 10 132 19 HOH HOH . E 3 HOH A 11 133 20 HOH HOH . E 3 HOH A 12 134 25 HOH HOH . E 3 HOH A 13 135 26 HOH HOH . E 3 HOH A 14 136 136 HOH HOH . E 3 HOH A 15 137 137 HOH HOH . E 3 HOH A 16 138 29 HOH HOH . E 3 HOH A 17 139 139 HOH HOH . E 3 HOH A 18 140 140 HOH HOH . E 3 HOH A 19 141 141 HOH HOH . E 3 HOH A 20 142 30 HOH HOH . E 3 HOH A 21 143 31 HOH HOH . E 3 HOH A 22 144 32 HOH HOH . E 3 HOH A 23 145 34 HOH HOH . E 3 HOH A 24 146 35 HOH HOH . E 3 HOH A 25 147 37 HOH HOH . E 3 HOH A 26 148 39 HOH HOH . E 3 HOH A 27 149 41 HOH HOH . E 3 HOH A 28 150 42 HOH HOH . E 3 HOH A 29 151 43 HOH HOH . E 3 HOH A 30 152 44 HOH HOH . E 3 HOH A 31 153 46 HOH HOH . E 3 HOH A 32 154 50 HOH HOH . E 3 HOH A 33 155 54 HOH HOH . E 3 HOH A 34 156 55 HOH HOH . E 3 HOH A 35 157 56 HOH HOH . E 3 HOH A 36 158 57 HOH HOH . E 3 HOH A 37 159 58 HOH HOH . E 3 HOH A 38 160 59 HOH HOH . E 3 HOH A 39 161 61 HOH HOH . E 3 HOH A 40 162 63 HOH HOH . E 3 HOH A 41 163 64 HOH HOH . E 3 HOH A 42 164 65 HOH HOH . E 3 HOH A 43 165 70 HOH HOH . E 3 HOH A 44 166 71 HOH HOH . E 3 HOH A 45 167 72 HOH HOH . E 3 HOH A 46 168 74 HOH HOH . E 3 HOH A 47 169 75 HOH HOH . E 3 HOH A 48 170 80 HOH HOH . E 3 HOH A 49 171 82 HOH HOH . E 3 HOH A 50 172 85 HOH HOH . E 3 HOH A 51 173 87 HOH HOH . E 3 HOH A 52 174 89 HOH HOH . E 3 HOH A 53 175 93 HOH HOH . E 3 HOH A 54 176 94 HOH HOH . E 3 HOH A 55 177 96 HOH HOH . E 3 HOH A 56 178 97 HOH HOH . E 3 HOH A 57 179 98 HOH HOH . E 3 HOH A 58 180 102 HOH HOH . E 3 HOH A 59 181 106 HOH HOH . E 3 HOH A 60 182 114 HOH HOH . E 3 HOH A 61 183 115 HOH HOH . E 3 HOH A 62 184 118 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 4 4 HOH HOH . F 3 HOH B 4 6 6 HOH HOH . F 3 HOH B 5 9 9 HOH HOH . F 3 HOH B 6 126 13 HOH HOH . F 3 HOH B 7 127 127 HOH HOH . F 3 HOH B 8 128 128 HOH HOH . F 3 HOH B 9 129 15 HOH HOH . F 3 HOH B 10 130 17 HOH HOH . F 3 HOH B 11 131 21 HOH HOH . F 3 HOH B 12 132 22 HOH HOH . F 3 HOH B 13 133 23 HOH HOH . F 3 HOH B 14 134 134 HOH HOH . F 3 HOH B 15 135 135 HOH HOH . F 3 HOH B 16 136 24 HOH HOH . F 3 HOH B 17 137 27 HOH HOH . F 3 HOH B 18 138 138 HOH HOH . F 3 HOH B 19 139 28 HOH HOH . F 3 HOH B 20 140 33 HOH HOH . F 3 HOH B 21 141 40 HOH HOH . F 3 HOH B 22 142 142 HOH HOH . F 3 HOH B 23 143 143 HOH HOH . F 3 HOH B 24 144 45 HOH HOH . F 3 HOH B 25 145 48 HOH HOH . F 3 HOH B 26 146 49 HOH HOH . F 3 HOH B 27 147 51 HOH HOH . F 3 HOH B 28 148 53 HOH HOH . F 3 HOH B 29 149 60 HOH HOH . F 3 HOH B 30 150 62 HOH HOH . F 3 HOH B 31 151 66 HOH HOH . F 3 HOH B 32 152 67 HOH HOH . F 3 HOH B 33 153 68 HOH HOH . F 3 HOH B 34 154 69 HOH HOH . F 3 HOH B 35 155 77 HOH HOH . F 3 HOH B 36 156 86 HOH HOH . F 3 HOH B 37 157 91 HOH HOH . F 3 HOH B 38 158 92 HOH HOH . F 3 HOH B 39 159 95 HOH HOH . F 3 HOH B 40 160 100 HOH HOH . F 3 HOH B 41 161 110 HOH HOH . F 3 HOH B 42 162 117 HOH HOH . F 3 HOH B 43 163 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF G24 . . . C 2 21.35 -2.467 -22.569 0.4 26.83 ? CAF G24 1 A 1 HETATM 2 C CAB G24 . . . C 2 20.668 -2.687 -21.371 0.4 27.75 ? CAB G24 1 A 1 HETATM 3 C CAC G24 . . . C 2 20.424 -1.64 -20.485 0.4 27.52 ? CAC G24 1 A 1 HETATM 4 C CAD G24 . . . C 2 20.873 -0.36 -20.81 0.4 27.95 ? CAD G24 1 A 1 HETATM 5 C CAH G24 . . . C 2 21.567 -0.175 -22.053 0.4 27.77 ? CAH G24 1 A 1 HETATM 6 C CAG G24 . . . C 2 21.764 -1.183 -22.877 0.4 29.08 ? CAG G24 1 A 1 HETATM 7 C CAQ G24 . . . C 2 22.535 -0.81 -24.12 0.4 31.23 ? CAQ G24 1 A 1 HETATM 8 C CAP G24 . . . C 2 21.745 -0.021 -25.161 0.4 30 ? CAP G24 1 A 1 HETATM 9 C CAO G24 . . . C 2 21.936 -0.568 -26.394 0.4 30.66 ? CAO G24 1 A 1 HETATM 10 C CBA G24 . . . C 2 20.935 1.121 -25.052 0.4 31.87 ? CBA G24 1 A 1 HETATM 11 O OBC G24 . . . C 2 20.712 1.763 -23.858 0.4 31.37 ? OBC G24 1 A 1 HETATM 12 C CAZ G24 . . . C 2 20.336 1.652 -26.2 0.4 31.17 ? CAZ G24 1 A 1 HETATM 13 C CAY G24 . . . C 2 20.542 1.066 -27.449 0.4 30.55 ? CAY G24 1 A 1 HETATM 14 C CAN G24 . . . C 2 21.355 -0.052 -27.508 0.4 29.91 ? CAN G24 1 A 1 HETATM 15 C CAM G24 . . . C 2 21.709 -0.842 -28.716 0.4 30.43 ? CAM G24 1 A 1 HETATM 16 C CAL G24 . . . C 2 21.402 -0.175 -29.998 0.4 29.98 ? CAL G24 1 A 1 HETATM 17 C CAX G24 . . . C 2 20.304 -0.622 -30.709 0.4 30.6 ? CAX G24 1 A 1 HETATM 18 C CBB G24 . . . C 2 19.45 -1.739 -30.105 0.4 31.88 ? CBB G24 1 A 1 HETATM 19 C CAW G24 . . . C 2 19.984 -0.055 -31.931 0.4 30.64 ? CAW G24 1 A 1 HETATM 20 C CAK G24 . . . C 2 22.212 0.83 -30.503 0.4 30.02 ? CAK G24 1 A 1 HETATM 21 C CAE G24 . . . C 2 23.432 1.298 -29.699 0.4 30.29 ? CAE G24 1 A 1 HETATM 22 C CAJ G24 . . . C 2 21.902 1.403 -31.724 0.4 30.45 ? CAJ G24 1 A 1 HETATM 23 C CAV G24 . . . C 2 20.791 0.96 -32.43 0.4 30.47 ? CAV G24 1 A 1 HETATM 24 O OAU G24 . . . C 2 20.513 1.538 -33.623 0.4 32.18 ? OAU G24 1 A 1 HETATM 25 C CAT G24 . . . C 2 21.419 2.621 -33.81 0.4 30.71 ? CAT G24 1 A 1 HETATM 26 C CAS G24 . . . C 2 22.576 2.262 -34.742 0.4 30.74 ? CAS G24 1 A 1 HETATM 27 O OAR G24 . . . C 2 22.523 2.676 -35.92 0.4 31.14 ? OAR G24 1 A 1 HETATM 28 O OAI G24 . . . C 2 23.518 1.587 -34.277 0.4 29.99 ? OAI G24 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #