data_3NES # _model_server_result.job_id QFE5Q2eWgG_DGPTzq2Aalg _model_server_result.datetime_utc '2024-10-18 16:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3NES # _exptl.entry_id 3NES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NES _cell.length_a 43.731 _cell.length_b 85.451 _cell.length_c 64.215 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NES _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C20 H24 O4' _chem_comp.formula_weight 328.402 _chem_comp.id B72 _chem_comp.mon_nstd_flag . _chem_comp.name '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O2 B72 doub 70 n n C20 O1 B72 sing 71 n n C19 C20 B72 sing 72 n n C19 H119 B72 sing 73 n n C19 H219 B72 sing 74 n n O3 C19 B72 sing 75 n n C1 O3 B72 sing 76 n n C2 C1 B72 sing 77 n y C2 H2 B72 sing 78 n n C3 C2 B72 doub 79 n y C17 C3 B72 sing 80 n n C17 H117 B72 sing 81 n n C17 H217 B72 sing 82 n n C17 H317 B72 sing 83 n n C4 C5 B72 doub 84 n y C4 C3 B72 sing 85 n y C5 C6 B72 sing 86 n y C6 C1 B72 doub 87 n y C6 H6 B72 sing 88 n n C18 C5 B72 sing 89 n n C18 H118 B72 sing 90 n n C18 H218 B72 sing 91 n n C18 H318 B72 sing 92 n n C7 C4 B72 sing 93 n n C7 H17 B72 sing 94 n n C7 H27 B72 sing 95 n n C8 C9 B72 sing 96 n y C8 C7 B72 sing 97 n n C13 C8 B72 doub 98 n y C13 H13 B72 sing 99 n n C12 C11 B72 doub 100 n y C12 C13 B72 sing 101 n y C14 C12 B72 sing 102 n n C14 C15 B72 sing 103 n n C14 H14 B72 sing 104 n n C16 C14 B72 sing 105 n n C16 H116 B72 sing 106 n n C16 H216 B72 sing 107 n n C16 H316 B72 sing 108 n n C15 H115 B72 sing 109 n n C15 H215 B72 sing 110 n n C15 H315 B72 sing 111 n n C11 C10 B72 sing 112 n y O4 C11 B72 sing 113 n n O4 HO4 B72 sing 114 n n C10 C9 B72 doub 115 n y C10 H10 B72 sing 116 n n C9 H9 B72 sing 117 n n O1 H24 B72 sing 118 n n # _atom_sites.entry_id 3NES _atom_sites.fract_transf_matrix[1][1] 0.022867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B72 A 1 1 1 B72 B72 . D 3 GOL A 1 126 1 GOL GOL . E 3 GOL A 1 127 1 GOL GOL . F 2 B72 B 1 1 1 B72 B72 . G 3 GOL B 1 126 1 GOL GOL . H 4 HOH A 1 6 6 HOH HOH . H 4 HOH A 2 8 8 HOH HOH . H 4 HOH A 3 9 9 HOH HOH . H 4 HOH A 4 128 128 HOH HOH . H 4 HOH A 5 129 1 HOH HOH . H 4 HOH A 6 130 11 HOH HOH . H 4 HOH A 7 131 12 HOH HOH . H 4 HOH A 8 132 132 HOH HOH . H 4 HOH A 9 133 14 HOH HOH . H 4 HOH A 10 134 15 HOH HOH . H 4 HOH A 11 135 17 HOH HOH . H 4 HOH A 12 136 18 HOH HOH . H 4 HOH A 13 137 19 HOH HOH . H 4 HOH A 14 138 21 HOH HOH . H 4 HOH A 15 139 23 HOH HOH . H 4 HOH A 16 140 24 HOH HOH . H 4 HOH A 17 141 141 HOH HOH . H 4 HOH A 18 142 25 HOH HOH . H 4 HOH A 19 143 143 HOH HOH . H 4 HOH A 20 144 144 HOH HOH . H 4 HOH A 21 145 145 HOH HOH . H 4 HOH A 22 146 26 HOH HOH . H 4 HOH A 23 147 27 HOH HOH . H 4 HOH A 24 148 148 HOH HOH . H 4 HOH A 25 149 30 HOH HOH . H 4 HOH A 26 150 31 HOH HOH . H 4 HOH A 27 151 151 HOH HOH . H 4 HOH A 28 152 33 HOH HOH . H 4 HOH A 29 153 153 HOH HOH . H 4 HOH A 30 154 34 HOH HOH . H 4 HOH A 31 155 35 HOH HOH . H 4 HOH A 32 156 156 HOH HOH . H 4 HOH A 33 157 41 HOH HOH . H 4 HOH A 34 158 42 HOH HOH . H 4 HOH A 35 159 46 HOH HOH . H 4 HOH A 36 160 47 HOH HOH . H 4 HOH A 37 161 51 HOH HOH . H 4 HOH A 38 162 54 HOH HOH . H 4 HOH A 39 163 163 HOH HOH . H 4 HOH A 40 164 56 HOH HOH . H 4 HOH A 41 165 59 HOH HOH . H 4 HOH A 42 166 166 HOH HOH . H 4 HOH A 43 167 60 HOH HOH . H 4 HOH A 44 168 62 HOH HOH . H 4 HOH A 45 169 169 HOH HOH . H 4 HOH A 46 170 65 HOH HOH . H 4 HOH A 47 171 66 HOH HOH . H 4 HOH A 48 172 172 HOH HOH . H 4 HOH A 49 173 173 HOH HOH . H 4 HOH A 50 174 174 HOH HOH . H 4 HOH A 51 175 71 HOH HOH . H 4 HOH A 52 176 72 HOH HOH . H 4 HOH A 53 177 73 HOH HOH . H 4 HOH A 54 178 178 HOH HOH . H 4 HOH A 55 179 74 HOH HOH . H 4 HOH A 56 180 75 HOH HOH . H 4 HOH A 57 181 181 HOH HOH . H 4 HOH A 58 182 80 HOH HOH . H 4 HOH A 59 183 81 HOH HOH . H 4 HOH A 60 184 88 HOH HOH . H 4 HOH A 61 185 89 HOH HOH . H 4 HOH A 62 186 91 HOH HOH . H 4 HOH A 63 187 187 HOH HOH . H 4 HOH A 64 188 94 HOH HOH . H 4 HOH A 65 189 189 HOH HOH . H 4 HOH A 66 190 190 HOH HOH . H 4 HOH A 67 191 191 HOH HOH . H 4 HOH A 68 192 95 HOH HOH . H 4 HOH A 69 193 96 HOH HOH . H 4 HOH A 70 194 99 HOH HOH . H 4 HOH A 71 195 100 HOH HOH . H 4 HOH A 72 196 102 HOH HOH . H 4 HOH A 73 197 197 HOH HOH . H 4 HOH A 74 198 105 HOH HOH . H 4 HOH A 75 199 199 HOH HOH . H 4 HOH A 76 200 200 HOH HOH . H 4 HOH A 77 201 109 HOH HOH . H 4 HOH A 78 202 113 HOH HOH . H 4 HOH A 79 203 117 HOH HOH . H 4 HOH A 80 204 118 HOH HOH . H 4 HOH A 81 205 205 HOH HOH . H 4 HOH A 82 206 125 HOH HOH . H 4 HOH A 83 207 127 HOH HOH . H 4 HOH A 84 208 208 HOH HOH . H 4 HOH A 85 213 213 HOH HOH . H 4 HOH A 86 219 219 HOH HOH . H 4 HOH A 87 238 238 HOH HOH . H 4 HOH A 88 240 240 HOH HOH . H 4 HOH A 89 242 242 HOH HOH . H 4 HOH A 90 244 244 HOH HOH . H 4 HOH A 91 247 247 HOH HOH . H 4 HOH A 92 250 250 HOH HOH . H 4 HOH A 93 251 251 HOH HOH . H 4 HOH A 94 253 253 HOH HOH . H 4 HOH A 95 254 254 HOH HOH . H 4 HOH A 96 258 258 HOH HOH . H 4 HOH A 97 259 259 HOH HOH . H 4 HOH A 98 262 262 HOH HOH . I 4 HOH B 1 2 2 HOH HOH . I 4 HOH B 2 3 3 HOH HOH . I 4 HOH B 3 4 4 HOH HOH . I 4 HOH B 4 5 5 HOH HOH . I 4 HOH B 5 7 7 HOH HOH . I 4 HOH B 6 127 13 HOH HOH . I 4 HOH B 7 128 16 HOH HOH . I 4 HOH B 8 129 129 HOH HOH . I 4 HOH B 9 130 130 HOH HOH . I 4 HOH B 10 131 20 HOH HOH . I 4 HOH B 11 132 22 HOH HOH . I 4 HOH B 12 133 28 HOH HOH . I 4 HOH B 13 134 29 HOH HOH . I 4 HOH B 14 135 32 HOH HOH . I 4 HOH B 15 136 136 HOH HOH . I 4 HOH B 16 137 36 HOH HOH . I 4 HOH B 17 138 138 HOH HOH . I 4 HOH B 18 139 139 HOH HOH . I 4 HOH B 19 140 140 HOH HOH . I 4 HOH B 20 141 37 HOH HOH . I 4 HOH B 21 142 142 HOH HOH . I 4 HOH B 22 143 38 HOH HOH . I 4 HOH B 23 144 39 HOH HOH . I 4 HOH B 24 145 40 HOH HOH . I 4 HOH B 25 146 44 HOH HOH . I 4 HOH B 26 147 147 HOH HOH . I 4 HOH B 27 148 48 HOH HOH . I 4 HOH B 28 149 149 HOH HOH . I 4 HOH B 29 150 150 HOH HOH . I 4 HOH B 30 151 49 HOH HOH . I 4 HOH B 31 152 152 HOH HOH . I 4 HOH B 32 153 50 HOH HOH . I 4 HOH B 33 154 53 HOH HOH . I 4 HOH B 34 155 155 HOH HOH . I 4 HOH B 35 156 55 HOH HOH . I 4 HOH B 36 157 57 HOH HOH . I 4 HOH B 37 158 58 HOH HOH . I 4 HOH B 38 159 61 HOH HOH . I 4 HOH B 39 160 160 HOH HOH . I 4 HOH B 40 161 161 HOH HOH . I 4 HOH B 41 162 63 HOH HOH . I 4 HOH B 42 163 64 HOH HOH . I 4 HOH B 43 164 67 HOH HOH . I 4 HOH B 44 165 68 HOH HOH . I 4 HOH B 45 166 69 HOH HOH . I 4 HOH B 46 167 167 HOH HOH . I 4 HOH B 47 168 168 HOH HOH . I 4 HOH B 48 169 76 HOH HOH . I 4 HOH B 49 170 170 HOH HOH . I 4 HOH B 50 171 171 HOH HOH . I 4 HOH B 51 172 77 HOH HOH . I 4 HOH B 52 173 78 HOH HOH . I 4 HOH B 53 174 82 HOH HOH . I 4 HOH B 54 175 175 HOH HOH . I 4 HOH B 55 176 176 HOH HOH . I 4 HOH B 56 177 177 HOH HOH . I 4 HOH B 57 178 83 HOH HOH . I 4 HOH B 58 179 179 HOH HOH . I 4 HOH B 59 180 180 HOH HOH . I 4 HOH B 60 181 84 HOH HOH . I 4 HOH B 61 182 182 HOH HOH . I 4 HOH B 62 183 85 HOH HOH . I 4 HOH B 63 184 184 HOH HOH . I 4 HOH B 64 185 87 HOH HOH . I 4 HOH B 65 186 186 HOH HOH . I 4 HOH B 66 187 90 HOH HOH . I 4 HOH B 67 188 93 HOH HOH . I 4 HOH B 68 189 97 HOH HOH . I 4 HOH B 69 190 98 HOH HOH . I 4 HOH B 70 191 101 HOH HOH . I 4 HOH B 71 192 192 HOH HOH . I 4 HOH B 72 193 193 HOH HOH . I 4 HOH B 73 194 103 HOH HOH . I 4 HOH B 74 195 195 HOH HOH . I 4 HOH B 75 196 196 HOH HOH . I 4 HOH B 76 197 106 HOH HOH . I 4 HOH B 77 198 107 HOH HOH . I 4 HOH B 78 199 110 HOH HOH . I 4 HOH B 79 200 111 HOH HOH . I 4 HOH B 80 201 112 HOH HOH . I 4 HOH B 81 202 114 HOH HOH . I 4 HOH B 82 203 116 HOH HOH . I 4 HOH B 83 204 119 HOH HOH . I 4 HOH B 84 205 120 HOH HOH . I 4 HOH B 85 206 206 HOH HOH . I 4 HOH B 86 207 207 HOH HOH . I 4 HOH B 87 208 121 HOH HOH . I 4 HOH B 88 209 209 HOH HOH . I 4 HOH B 89 210 122 HOH HOH . I 4 HOH B 90 211 123 HOH HOH . I 4 HOH B 91 212 124 HOH HOH . I 4 HOH B 92 213 126 HOH HOH . I 4 HOH B 93 214 214 HOH HOH . I 4 HOH B 94 215 215 HOH HOH . I 4 HOH B 95 220 220 HOH HOH . I 4 HOH B 96 236 236 HOH HOH . I 4 HOH B 97 245 245 HOH HOH . I 4 HOH B 98 246 246 HOH HOH . I 4 HOH B 99 252 252 HOH HOH . I 4 HOH B 100 255 255 HOH HOH . I 4 HOH B 101 257 257 HOH HOH . I 4 HOH B 102 260 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B72 . . . C 2 3.462 -1.549 2.428 0.45 30.18 ? O1 B72 1 A 1 HETATM 2 C C20 B72 . . . C 2 2.288 -1.14 2.293 0.45 29.45 ? C20 B72 1 A 1 HETATM 3 O O2 B72 . . . C 2 1.285 -1.871 2.436 0.45 31.98 ? O2 B72 1 A 1 HETATM 4 C C19 B72 . . . C 2 2.065 0.342 1.942 0.45 27.61 ? C19 B72 1 A 1 HETATM 5 O O3 B72 . . . C 2 0.806 0.841 1.382 0.45 27.79 ? O3 B72 1 A 1 HETATM 6 C C1 B72 . . . C 2 0.462 0.483 0.096 0.45 24.45 ? C1 B72 1 A 1 HETATM 7 C C2 B72 . . . C 2 1.216 -0.438 -0.619 0.45 25.32 ? C2 B72 1 A 1 HETATM 8 C C3 B72 . . . C 2 0.848 -0.765 -1.918 0.45 23.11 ? C3 B72 1 A 1 HETATM 9 C C17 B72 . . . C 2 1.699 -1.787 -2.69 0.45 23 ? C17 B72 1 A 1 HETATM 10 C C4 B72 . . . C 2 -0.281 -0.183 -2.513 0.45 21.72 ? C4 B72 1 A 1 HETATM 11 C C5 B72 . . . C 2 -1.045 0.716 -1.784 0.45 22.84 ? C5 B72 1 A 1 HETATM 12 C C6 B72 . . . C 2 -0.667 1.052 -0.49 0.45 24.11 ? C6 B72 1 A 1 HETATM 13 C C18 B72 . . . C 2 -2.3 1.357 -2.403 0.45 23.32 ? C18 B72 1 A 1 HETATM 14 C C7 B72 . . . C 2 -0.722 -0.595 -3.912 0.45 19.74 ? C7 B72 1 A 1 HETATM 15 C C8 B72 . . . C 2 0.029 0.096 -5.003 0.45 18.4 ? C8 B72 1 A 1 HETATM 16 C C13 B72 . . . C 2 -0.175 -0.303 -6.329 0.45 14.73 ? C13 B72 1 A 1 HETATM 17 C C12 B72 . . . C 2 0.505 0.35 -7.327 0.45 16.62 ? C12 B72 1 A 1 HETATM 18 C C14 B72 . . . C 2 0.377 -0.022 -8.815 0.45 19.53 ? C14 B72 1 A 1 HETATM 19 C C16 B72 . . . C 2 -0.746 -1.036 -9.011 0.45 21.47 ? C16 B72 1 A 1 HETATM 20 C C15 B72 . . . C 2 0.097 1.246 -9.607 0.45 20.75 ? C15 B72 1 A 1 HETATM 21 C C11 B72 . . . C 2 1.342 1.384 -6.963 0.45 16.48 ? C11 B72 1 A 1 HETATM 22 O O4 B72 . . . C 2 2.002 2.011 -7.954 0.45 18.92 ? O4 B72 1 A 1 HETATM 23 C C10 B72 . . . C 2 1.523 1.787 -5.64 0.45 14.56 ? C10 B72 1 A 1 HETATM 24 C C9 B72 . . . C 2 0.848 1.136 -4.635 0.45 16.64 ? C9 B72 1 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #