data_3NES
#
_model_server_result.job_id            sk2aI-dtzEuAuW7NgnMtKg 
_model_server_result.datetime_utc      '2024-10-18 16:21:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nes 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":126}' 
#
_entry.id    3NES 
#
_exptl.entry_id    3NES 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NES 
_cell.length_a            43.731 
_cell.length_b            85.451 
_cell.length_c            64.215 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NES 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 159 n n 
C1 C2 GOL sing 160 n n 
C1 H11 GOL sing 161 n n 
C1 H12 GOL sing 162 n n 
O1 HO1 GOL sing 163 n n 
C2 O2 GOL sing 164 n n 
C2 C3 GOL sing 165 n n 
C2 H2 GOL sing 166 n n 
O2 HO2 GOL sing 167 n n 
C3 O3 GOL sing 168 n n 
C3 H31 GOL sing 169 n n 
C3 H32 GOL sing 170 n n 
O3 HO3 GOL sing 171 n n 
#
_atom_sites.entry_id                     3NES 
_atom_sites.fract_transf_matrix[1][1]    0.022867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015573 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B72 A 1 1 1 B72 B72 . 
D 3 GOL A 1 126 1 GOL GOL . 
E 3 GOL A 1 127 1 GOL GOL . 
F 2 B72 B 1 1 1 B72 B72 . 
G 3 GOL B 1 126 1 GOL GOL . 
H 4 HOH A 1 6 6 HOH HOH . 
H 4 HOH A 2 8 8 HOH HOH . 
H 4 HOH A 3 9 9 HOH HOH . 
H 4 HOH A 4 128 128 HOH HOH . 
H 4 HOH A 5 129 1 HOH HOH . 
H 4 HOH A 6 130 11 HOH HOH . 
H 4 HOH A 7 131 12 HOH HOH . 
H 4 HOH A 8 132 132 HOH HOH . 
H 4 HOH A 9 133 14 HOH HOH . 
H 4 HOH A 10 134 15 HOH HOH . 
H 4 HOH A 11 135 17 HOH HOH . 
H 4 HOH A 12 136 18 HOH HOH . 
H 4 HOH A 13 137 19 HOH HOH . 
H 4 HOH A 14 138 21 HOH HOH . 
H 4 HOH A 15 139 23 HOH HOH . 
H 4 HOH A 16 140 24 HOH HOH . 
H 4 HOH A 17 141 141 HOH HOH . 
H 4 HOH A 18 142 25 HOH HOH . 
H 4 HOH A 19 143 143 HOH HOH . 
H 4 HOH A 20 144 144 HOH HOH . 
H 4 HOH A 21 145 145 HOH HOH . 
H 4 HOH A 22 146 26 HOH HOH . 
H 4 HOH A 23 147 27 HOH HOH . 
H 4 HOH A 24 148 148 HOH HOH . 
H 4 HOH A 25 149 30 HOH HOH . 
H 4 HOH A 26 150 31 HOH HOH . 
H 4 HOH A 27 151 151 HOH HOH . 
H 4 HOH A 28 152 33 HOH HOH . 
H 4 HOH A 29 153 153 HOH HOH . 
H 4 HOH A 30 154 34 HOH HOH . 
H 4 HOH A 31 155 35 HOH HOH . 
H 4 HOH A 32 156 156 HOH HOH . 
H 4 HOH A 33 157 41 HOH HOH . 
H 4 HOH A 34 158 42 HOH HOH . 
H 4 HOH A 35 159 46 HOH HOH . 
H 4 HOH A 36 160 47 HOH HOH . 
H 4 HOH A 37 161 51 HOH HOH . 
H 4 HOH A 38 162 54 HOH HOH . 
H 4 HOH A 39 163 163 HOH HOH . 
H 4 HOH A 40 164 56 HOH HOH . 
H 4 HOH A 41 165 59 HOH HOH . 
H 4 HOH A 42 166 166 HOH HOH . 
H 4 HOH A 43 167 60 HOH HOH . 
H 4 HOH A 44 168 62 HOH HOH . 
H 4 HOH A 45 169 169 HOH HOH . 
H 4 HOH A 46 170 65 HOH HOH . 
H 4 HOH A 47 171 66 HOH HOH . 
H 4 HOH A 48 172 172 HOH HOH . 
H 4 HOH A 49 173 173 HOH HOH . 
H 4 HOH A 50 174 174 HOH HOH . 
H 4 HOH A 51 175 71 HOH HOH . 
H 4 HOH A 52 176 72 HOH HOH . 
H 4 HOH A 53 177 73 HOH HOH . 
H 4 HOH A 54 178 178 HOH HOH . 
H 4 HOH A 55 179 74 HOH HOH . 
H 4 HOH A 56 180 75 HOH HOH . 
H 4 HOH A 57 181 181 HOH HOH . 
H 4 HOH A 58 182 80 HOH HOH . 
H 4 HOH A 59 183 81 HOH HOH . 
H 4 HOH A 60 184 88 HOH HOH . 
H 4 HOH A 61 185 89 HOH HOH . 
H 4 HOH A 62 186 91 HOH HOH . 
H 4 HOH A 63 187 187 HOH HOH . 
H 4 HOH A 64 188 94 HOH HOH . 
H 4 HOH A 65 189 189 HOH HOH . 
H 4 HOH A 66 190 190 HOH HOH . 
H 4 HOH A 67 191 191 HOH HOH . 
H 4 HOH A 68 192 95 HOH HOH . 
H 4 HOH A 69 193 96 HOH HOH . 
H 4 HOH A 70 194 99 HOH HOH . 
H 4 HOH A 71 195 100 HOH HOH . 
H 4 HOH A 72 196 102 HOH HOH . 
H 4 HOH A 73 197 197 HOH HOH . 
H 4 HOH A 74 198 105 HOH HOH . 
H 4 HOH A 75 199 199 HOH HOH . 
H 4 HOH A 76 200 200 HOH HOH . 
H 4 HOH A 77 201 109 HOH HOH . 
H 4 HOH A 78 202 113 HOH HOH . 
H 4 HOH A 79 203 117 HOH HOH . 
H 4 HOH A 80 204 118 HOH HOH . 
H 4 HOH A 81 205 205 HOH HOH . 
H 4 HOH A 82 206 125 HOH HOH . 
H 4 HOH A 83 207 127 HOH HOH . 
H 4 HOH A 84 208 208 HOH HOH . 
H 4 HOH A 85 213 213 HOH HOH . 
H 4 HOH A 86 219 219 HOH HOH . 
H 4 HOH A 87 238 238 HOH HOH . 
H 4 HOH A 88 240 240 HOH HOH . 
H 4 HOH A 89 242 242 HOH HOH . 
H 4 HOH A 90 244 244 HOH HOH . 
H 4 HOH A 91 247 247 HOH HOH . 
H 4 HOH A 92 250 250 HOH HOH . 
H 4 HOH A 93 251 251 HOH HOH . 
H 4 HOH A 94 253 253 HOH HOH . 
H 4 HOH A 95 254 254 HOH HOH . 
H 4 HOH A 96 258 258 HOH HOH . 
H 4 HOH A 97 259 259 HOH HOH . 
H 4 HOH A 98 262 262 HOH HOH . 
I 4 HOH B 1 2 2 HOH HOH . 
I 4 HOH B 2 3 3 HOH HOH . 
I 4 HOH B 3 4 4 HOH HOH . 
I 4 HOH B 4 5 5 HOH HOH . 
I 4 HOH B 5 7 7 HOH HOH . 
I 4 HOH B 6 127 13 HOH HOH . 
I 4 HOH B 7 128 16 HOH HOH . 
I 4 HOH B 8 129 129 HOH HOH . 
I 4 HOH B 9 130 130 HOH HOH . 
I 4 HOH B 10 131 20 HOH HOH . 
I 4 HOH B 11 132 22 HOH HOH . 
I 4 HOH B 12 133 28 HOH HOH . 
I 4 HOH B 13 134 29 HOH HOH . 
I 4 HOH B 14 135 32 HOH HOH . 
I 4 HOH B 15 136 136 HOH HOH . 
I 4 HOH B 16 137 36 HOH HOH . 
I 4 HOH B 17 138 138 HOH HOH . 
I 4 HOH B 18 139 139 HOH HOH . 
I 4 HOH B 19 140 140 HOH HOH . 
I 4 HOH B 20 141 37 HOH HOH . 
I 4 HOH B 21 142 142 HOH HOH . 
I 4 HOH B 22 143 38 HOH HOH . 
I 4 HOH B 23 144 39 HOH HOH . 
I 4 HOH B 24 145 40 HOH HOH . 
I 4 HOH B 25 146 44 HOH HOH . 
I 4 HOH B 26 147 147 HOH HOH . 
I 4 HOH B 27 148 48 HOH HOH . 
I 4 HOH B 28 149 149 HOH HOH . 
I 4 HOH B 29 150 150 HOH HOH . 
I 4 HOH B 30 151 49 HOH HOH . 
I 4 HOH B 31 152 152 HOH HOH . 
I 4 HOH B 32 153 50 HOH HOH . 
I 4 HOH B 33 154 53 HOH HOH . 
I 4 HOH B 34 155 155 HOH HOH . 
I 4 HOH B 35 156 55 HOH HOH . 
I 4 HOH B 36 157 57 HOH HOH . 
I 4 HOH B 37 158 58 HOH HOH . 
I 4 HOH B 38 159 61 HOH HOH . 
I 4 HOH B 39 160 160 HOH HOH . 
I 4 HOH B 40 161 161 HOH HOH . 
I 4 HOH B 41 162 63 HOH HOH . 
I 4 HOH B 42 163 64 HOH HOH . 
I 4 HOH B 43 164 67 HOH HOH . 
I 4 HOH B 44 165 68 HOH HOH . 
I 4 HOH B 45 166 69 HOH HOH . 
I 4 HOH B 46 167 167 HOH HOH . 
I 4 HOH B 47 168 168 HOH HOH . 
I 4 HOH B 48 169 76 HOH HOH . 
I 4 HOH B 49 170 170 HOH HOH . 
I 4 HOH B 50 171 171 HOH HOH . 
I 4 HOH B 51 172 77 HOH HOH . 
I 4 HOH B 52 173 78 HOH HOH . 
I 4 HOH B 53 174 82 HOH HOH . 
I 4 HOH B 54 175 175 HOH HOH . 
I 4 HOH B 55 176 176 HOH HOH . 
I 4 HOH B 56 177 177 HOH HOH . 
I 4 HOH B 57 178 83 HOH HOH . 
I 4 HOH B 58 179 179 HOH HOH . 
I 4 HOH B 59 180 180 HOH HOH . 
I 4 HOH B 60 181 84 HOH HOH . 
I 4 HOH B 61 182 182 HOH HOH . 
I 4 HOH B 62 183 85 HOH HOH . 
I 4 HOH B 63 184 184 HOH HOH . 
I 4 HOH B 64 185 87 HOH HOH . 
I 4 HOH B 65 186 186 HOH HOH . 
I 4 HOH B 66 187 90 HOH HOH . 
I 4 HOH B 67 188 93 HOH HOH . 
I 4 HOH B 68 189 97 HOH HOH . 
I 4 HOH B 69 190 98 HOH HOH . 
I 4 HOH B 70 191 101 HOH HOH . 
I 4 HOH B 71 192 192 HOH HOH . 
I 4 HOH B 72 193 193 HOH HOH . 
I 4 HOH B 73 194 103 HOH HOH . 
I 4 HOH B 74 195 195 HOH HOH . 
I 4 HOH B 75 196 196 HOH HOH . 
I 4 HOH B 76 197 106 HOH HOH . 
I 4 HOH B 77 198 107 HOH HOH . 
I 4 HOH B 78 199 110 HOH HOH . 
I 4 HOH B 79 200 111 HOH HOH . 
I 4 HOH B 80 201 112 HOH HOH . 
I 4 HOH B 81 202 114 HOH HOH . 
I 4 HOH B 82 203 116 HOH HOH . 
I 4 HOH B 83 204 119 HOH HOH . 
I 4 HOH B 84 205 120 HOH HOH . 
I 4 HOH B 85 206 206 HOH HOH . 
I 4 HOH B 86 207 207 HOH HOH . 
I 4 HOH B 87 208 121 HOH HOH . 
I 4 HOH B 88 209 209 HOH HOH . 
I 4 HOH B 89 210 122 HOH HOH . 
I 4 HOH B 90 211 123 HOH HOH . 
I 4 HOH B 91 212 124 HOH HOH . 
I 4 HOH B 92 213 126 HOH HOH . 
I 4 HOH B 93 214 214 HOH HOH . 
I 4 HOH B 94 215 215 HOH HOH . 
I 4 HOH B 95 220 220 HOH HOH . 
I 4 HOH B 96 236 236 HOH HOH . 
I 4 HOH B 97 245 245 HOH HOH . 
I 4 HOH B 98 246 246 HOH HOH . 
I 4 HOH B 99 252 252 HOH HOH . 
I 4 HOH B 100 255 255 HOH HOH . 
I 4 HOH B 101 257 257 HOH HOH . 
I 4 HOH B 102 260 260 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 0.206 22.968 3.593 1 23.65 ? C1 GOL 126 A 1 
HETATM 2 O O1 GOL . . . D 3 -0.759 23.72 2.958 1 25.36 ? O1 GOL 126 A 1 
HETATM 3 C C2 GOL . . . D 3 0.06 23.386 5.044 1 24.69 ? C2 GOL 126 A 1 
HETATM 4 O O2 GOL . . . D 3 1.294 23.3 5.718 1 20.15 ? O2 GOL 126 A 1 
HETATM 5 C C3 GOL . . . D 3 -0.484 24.818 5.019 1 21.28 ? C3 GOL 126 A 1 
HETATM 6 O O3 GOL . . . D 3 -1.877 24.605 5.054 1 29.58 ? O3 GOL 126 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#