data_3NEX
#
_model_server_result.job_id            uGlUB_YwylTS2Vnn9SpMkA 
_model_server_result.datetime_utc      '2025-02-26 15:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nex 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3NEX 
#
_exptl.entry_id    3NEX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NEX 
_cell.length_a            43.76 
_cell.length_b            85.4 
_cell.length_c            64.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NEX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 164 n n 
C1 C2 GOL sing 165 n n 
C1 H11 GOL sing 166 n n 
C1 H12 GOL sing 167 n n 
O1 HO1 GOL sing 168 n n 
C2 O2 GOL sing 169 n n 
C2 C3 GOL sing 170 n n 
C2 H2 GOL sing 171 n n 
O2 HO2 GOL sing 172 n n 
C3 O3 GOL sing 173 n n 
C3 H31 GOL sing 174 n n 
C3 H32 GOL sing 175 n n 
O3 HO3 GOL sing 176 n n 
#
_atom_sites.entry_id                     3NEX 
_atom_sites.fract_transf_matrix[1][1]    0.022852 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01171 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1 1 GOL GOL . 
D 3 G24 A 1 126 1 G24 G24 . 
E 2 GOL B 1 1 1 GOL GOL . 
F 3 G24 B 1 126 1 G24 G24 . 
G 4 HOH A 1 2 2 HOH HOH . 
G 4 HOH A 2 3 3 HOH HOH . 
G 4 HOH A 3 4 4 HOH HOH . 
G 4 HOH A 4 6 6 HOH HOH . 
G 4 HOH A 5 127 127 HOH HOH . 
G 4 HOH A 6 128 128 HOH HOH . 
G 4 HOH A 7 129 11 HOH HOH . 
G 4 HOH A 8 130 130 HOH HOH . 
G 4 HOH A 9 131 12 HOH HOH . 
G 4 HOH A 10 132 132 HOH HOH . 
G 4 HOH A 11 133 133 HOH HOH . 
G 4 HOH A 12 134 134 HOH HOH . 
G 4 HOH A 13 135 135 HOH HOH . 
G 4 HOH A 14 136 136 HOH HOH . 
G 4 HOH A 15 137 14 HOH HOH . 
G 4 HOH A 16 138 138 HOH HOH . 
G 4 HOH A 17 139 15 HOH HOH . 
G 4 HOH A 18 140 17 HOH HOH . 
G 4 HOH A 19 141 18 HOH HOH . 
G 4 HOH A 20 142 21 HOH HOH . 
G 4 HOH A 21 143 24 HOH HOH . 
G 4 HOH A 22 144 26 HOH HOH . 
G 4 HOH A 23 145 145 HOH HOH . 
G 4 HOH A 24 146 30 HOH HOH . 
G 4 HOH A 25 147 147 HOH HOH . 
G 4 HOH A 26 148 148 HOH HOH . 
G 4 HOH A 27 149 31 HOH HOH . 
G 4 HOH A 28 150 150 HOH HOH . 
G 4 HOH A 29 151 34 HOH HOH . 
G 4 HOH A 30 152 152 HOH HOH . 
G 4 HOH A 31 153 36 HOH HOH . 
G 4 HOH A 32 154 37 HOH HOH . 
G 4 HOH A 33 155 155 HOH HOH . 
G 4 HOH A 34 156 38 HOH HOH . 
G 4 HOH A 35 157 39 HOH HOH . 
G 4 HOH A 36 158 44 HOH HOH . 
G 4 HOH A 37 159 45 HOH HOH . 
G 4 HOH A 38 160 46 HOH HOH . 
G 4 HOH A 39 161 48 HOH HOH . 
G 4 HOH A 40 162 49 HOH HOH . 
G 4 HOH A 41 163 54 HOH HOH . 
G 4 HOH A 42 164 164 HOH HOH . 
G 4 HOH A 43 165 165 HOH HOH . 
G 4 HOH A 44 166 55 HOH HOH . 
G 4 HOH A 45 167 167 HOH HOH . 
G 4 HOH A 46 168 168 HOH HOH . 
G 4 HOH A 47 169 169 HOH HOH . 
G 4 HOH A 48 170 170 HOH HOH . 
G 4 HOH A 49 171 171 HOH HOH . 
G 4 HOH A 50 172 172 HOH HOH . 
G 4 HOH A 51 173 173 HOH HOH . 
G 4 HOH A 52 174 56 HOH HOH . 
G 4 HOH A 53 175 175 HOH HOH . 
G 4 HOH A 54 176 58 HOH HOH . 
G 4 HOH A 55 177 59 HOH HOH . 
G 4 HOH A 56 178 60 HOH HOH . 
G 4 HOH A 57 179 61 HOH HOH . 
G 4 HOH A 58 180 62 HOH HOH . 
G 4 HOH A 59 181 63 HOH HOH . 
G 4 HOH A 60 182 182 HOH HOH . 
G 4 HOH A 61 183 183 HOH HOH . 
G 4 HOH A 62 184 64 HOH HOH . 
G 4 HOH A 63 185 185 HOH HOH . 
G 4 HOH A 64 186 65 HOH HOH . 
G 4 HOH A 65 187 187 HOH HOH . 
G 4 HOH A 66 188 188 HOH HOH . 
G 4 HOH A 67 189 66 HOH HOH . 
G 4 HOH A 68 190 68 HOH HOH . 
G 4 HOH A 69 191 69 HOH HOH . 
G 4 HOH A 70 192 70 HOH HOH . 
G 4 HOH A 71 193 72 HOH HOH . 
G 4 HOH A 72 194 194 HOH HOH . 
G 4 HOH A 73 195 195 HOH HOH . 
G 4 HOH A 74 196 73 HOH HOH . 
G 4 HOH A 75 197 197 HOH HOH . 
G 4 HOH A 76 198 74 HOH HOH . 
G 4 HOH A 77 199 199 HOH HOH . 
G 4 HOH A 78 200 75 HOH HOH . 
G 4 HOH A 79 201 201 HOH HOH . 
G 4 HOH A 80 202 76 HOH HOH . 
G 4 HOH A 81 203 203 HOH HOH . 
G 4 HOH A 82 204 77 HOH HOH . 
G 4 HOH A 83 205 78 HOH HOH . 
G 4 HOH A 84 206 79 HOH HOH . 
G 4 HOH A 85 207 207 HOH HOH . 
G 4 HOH A 86 208 84 HOH HOH . 
G 4 HOH A 87 209 86 HOH HOH . 
G 4 HOH A 88 210 87 HOH HOH . 
G 4 HOH A 89 211 91 HOH HOH . 
G 4 HOH A 90 212 93 HOH HOH . 
G 4 HOH A 91 213 97 HOH HOH . 
G 4 HOH A 92 214 98 HOH HOH . 
G 4 HOH A 93 215 100 HOH HOH . 
G 4 HOH A 94 216 104 HOH HOH . 
G 4 HOH A 95 217 105 HOH HOH . 
G 4 HOH A 96 218 112 HOH HOH . 
G 4 HOH A 97 219 219 HOH HOH . 
G 4 HOH A 98 220 114 HOH HOH . 
G 4 HOH A 99 221 116 HOH HOH . 
G 4 HOH A 100 222 117 HOH HOH . 
G 4 HOH A 101 223 118 HOH HOH . 
G 4 HOH A 102 224 119 HOH HOH . 
G 4 HOH A 103 226 226 HOH HOH . 
G 4 HOH A 104 229 229 HOH HOH . 
H 4 HOH B 1 7 7 HOH HOH . 
H 4 HOH B 2 8 8 HOH HOH . 
H 4 HOH B 3 9 9 HOH HOH . 
H 4 HOH B 4 127 1 HOH HOH . 
H 4 HOH B 5 128 10 HOH HOH . 
H 4 HOH B 6 129 129 HOH HOH . 
H 4 HOH B 7 130 13 HOH HOH . 
H 4 HOH B 8 131 16 HOH HOH . 
H 4 HOH B 9 132 19 HOH HOH . 
H 4 HOH B 10 133 20 HOH HOH . 
H 4 HOH B 11 134 22 HOH HOH . 
H 4 HOH B 12 135 23 HOH HOH . 
H 4 HOH B 13 136 25 HOH HOH . 
H 4 HOH B 14 137 137 HOH HOH . 
H 4 HOH B 15 138 27 HOH HOH . 
H 4 HOH B 16 139 28 HOH HOH . 
H 4 HOH B 17 140 140 HOH HOH . 
H 4 HOH B 18 141 141 HOH HOH . 
H 4 HOH B 19 142 142 HOH HOH . 
H 4 HOH B 20 143 29 HOH HOH . 
H 4 HOH B 21 144 144 HOH HOH . 
H 4 HOH B 22 145 32 HOH HOH . 
H 4 HOH B 23 146 146 HOH HOH . 
H 4 HOH B 24 147 33 HOH HOH . 
H 4 HOH B 25 148 35 HOH HOH . 
H 4 HOH B 26 149 40 HOH HOH . 
H 4 HOH B 27 150 41 HOH HOH . 
H 4 HOH B 28 151 151 HOH HOH . 
H 4 HOH B 29 152 42 HOH HOH . 
H 4 HOH B 30 153 153 HOH HOH . 
H 4 HOH B 31 154 154 HOH HOH . 
H 4 HOH B 32 155 43 HOH HOH . 
H 4 HOH B 33 156 156 HOH HOH . 
H 4 HOH B 34 157 157 HOH HOH . 
H 4 HOH B 35 158 158 HOH HOH . 
H 4 HOH B 36 159 159 HOH HOH . 
H 4 HOH B 37 160 160 HOH HOH . 
H 4 HOH B 38 161 161 HOH HOH . 
H 4 HOH B 39 162 162 HOH HOH . 
H 4 HOH B 40 163 163 HOH HOH . 
H 4 HOH B 41 164 47 HOH HOH . 
H 4 HOH B 42 165 50 HOH HOH . 
H 4 HOH B 43 166 166 HOH HOH . 
H 4 HOH B 44 167 51 HOH HOH . 
H 4 HOH B 45 168 52 HOH HOH . 
H 4 HOH B 46 169 53 HOH HOH . 
H 4 HOH B 47 170 57 HOH HOH . 
H 4 HOH B 48 171 67 HOH HOH . 
H 4 HOH B 49 172 71 HOH HOH . 
H 4 HOH B 50 173 80 HOH HOH . 
H 4 HOH B 51 174 174 HOH HOH . 
H 4 HOH B 52 175 81 HOH HOH . 
H 4 HOH B 53 176 176 HOH HOH . 
H 4 HOH B 54 177 177 HOH HOH . 
H 4 HOH B 55 178 178 HOH HOH . 
H 4 HOH B 56 179 179 HOH HOH . 
H 4 HOH B 57 180 180 HOH HOH . 
H 4 HOH B 58 181 181 HOH HOH . 
H 4 HOH B 59 182 82 HOH HOH . 
H 4 HOH B 60 183 83 HOH HOH . 
H 4 HOH B 61 184 184 HOH HOH . 
H 4 HOH B 62 185 85 HOH HOH . 
H 4 HOH B 63 186 186 HOH HOH . 
H 4 HOH B 64 187 88 HOH HOH . 
H 4 HOH B 65 188 89 HOH HOH . 
H 4 HOH B 66 189 189 HOH HOH . 
H 4 HOH B 67 190 190 HOH HOH . 
H 4 HOH B 68 191 191 HOH HOH . 
H 4 HOH B 69 192 192 HOH HOH . 
H 4 HOH B 70 193 193 HOH HOH . 
H 4 HOH B 71 194 90 HOH HOH . 
H 4 HOH B 72 195 92 HOH HOH . 
H 4 HOH B 73 196 196 HOH HOH . 
H 4 HOH B 74 197 94 HOH HOH . 
H 4 HOH B 75 198 198 HOH HOH . 
H 4 HOH B 76 199 95 HOH HOH . 
H 4 HOH B 77 200 96 HOH HOH . 
H 4 HOH B 78 201 99 HOH HOH . 
H 4 HOH B 79 202 202 HOH HOH . 
H 4 HOH B 80 203 101 HOH HOH . 
H 4 HOH B 81 204 204 HOH HOH . 
H 4 HOH B 82 205 205 HOH HOH . 
H 4 HOH B 83 206 206 HOH HOH . 
H 4 HOH B 84 207 102 HOH HOH . 
H 4 HOH B 85 208 208 HOH HOH . 
H 4 HOH B 86 209 209 HOH HOH . 
H 4 HOH B 87 210 103 HOH HOH . 
H 4 HOH B 88 211 106 HOH HOH . 
H 4 HOH B 89 212 107 HOH HOH . 
H 4 HOH B 90 213 109 HOH HOH . 
H 4 HOH B 91 214 110 HOH HOH . 
H 4 HOH B 92 215 111 HOH HOH . 
H 4 HOH B 93 216 113 HOH HOH . 
H 4 HOH B 94 217 115 HOH HOH . 
H 4 HOH B 95 218 120 HOH HOH . 
H 4 HOH B 96 219 121 HOH HOH . 
H 4 HOH B 97 220 122 HOH HOH . 
H 4 HOH B 98 221 123 HOH HOH . 
H 4 HOH B 99 222 124 HOH HOH . 
H 4 HOH B 100 223 125 HOH HOH . 
H 4 HOH B 101 224 224 HOH HOH . 
H 4 HOH B 102 225 126 HOH HOH . 
H 4 HOH B 103 227 227 HOH HOH . 
H 4 HOH B 104 228 228 HOH HOH . 
H 4 HOH B 105 230 230 HOH HOH . 
H 4 HOH B 106 231 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -20.962 -18.678 5.127 1 37.26 ? C1 GOL 1 A 1 
HETATM 2 O O1 GOL . . . C 2 -20.573 -19.67 6.044 1 37.29 ? O1 GOL 1 A 1 
HETATM 3 C C2 GOL . . . C 2 -22.442 -18.738 4.844 1 37.49 ? C2 GOL 1 A 1 
HETATM 4 O O2 GOL . . . C 2 -22.832 -20.002 5.337 1 37.08 ? O2 GOL 1 A 1 
HETATM 5 C C3 GOL . . . C 2 -22.613 -18.613 3.321 1 37.99 ? C3 GOL 1 A 1 
HETATM 6 O O3 GOL . . . C 2 -22.521 -17.239 2.943 1 39.62 ? O3 GOL 1 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#