data_3NEX # _model_server_result.job_id zSxrTgx4msHIqSpDH3lYXA _model_server_result.datetime_utc '2025-02-26 14:57:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":126}' # _entry.id 3NEX # _exptl.entry_id 3NEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.445 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NEX _cell.length_a 43.76 _cell.length_b 85.4 _cell.length_c 64.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H24 O4' _chem_comp.formula_weight 376.445 _chem_comp.id G24 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GC-24 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAB G24 doub 83 n y CAF CAG G24 sing 84 n y CAF HAF G24 sing 85 n n CAB CAC G24 sing 86 n y CAB HAB G24 sing 87 n n CAC CAD G24 doub 88 n y CAC HAC G24 sing 89 n n CAD CAH G24 sing 90 n y CAD HAD G24 sing 91 n n CAH CAG G24 doub 92 n y CAH HAH G24 sing 93 n n CAG CAQ G24 sing 94 n n CAQ CAP G24 sing 95 n n CAQ HAQ1 G24 sing 96 n n CAQ HAQ2 G24 sing 97 n n CAP CAO G24 doub 98 n y CAP CBA G24 sing 99 n y CAO CAN G24 sing 100 n y CAO HAO G24 sing 101 n n CBA OBC G24 sing 102 n n CBA CAZ G24 doub 103 n y OBC HBC G24 sing 104 n n CAZ CAY G24 sing 105 n y CAZ HAZ G24 sing 106 n n CAY CAN G24 doub 107 n y CAY HAY G24 sing 108 n n CAN CAM G24 sing 109 n n CAM CAL G24 sing 110 n n CAM HAM1 G24 sing 111 n n CAM HAM2 G24 sing 112 n n CAL CAX G24 doub 113 n y CAL CAK G24 sing 114 n y CAX CBB G24 sing 115 n n CAX CAW G24 sing 116 n y CBB HBB1 G24 sing 117 n n CBB HBB2 G24 sing 118 n n CBB HBB3 G24 sing 119 n n CAW CAV G24 doub 120 n y CAW HAW G24 sing 121 n n CAK CAE G24 sing 122 n n CAK CAJ G24 doub 123 n y CAE HAE1 G24 sing 124 n n CAE HAE2 G24 sing 125 n n CAE HAE3 G24 sing 126 n n CAJ CAV G24 sing 127 n y CAJ HAJ G24 sing 128 n n CAV OAU G24 sing 129 n n OAU CAT G24 sing 130 n n CAT CAS G24 sing 131 n n CAT HAT1 G24 sing 132 n n CAT HAT2 G24 sing 133 n n CAS OAR G24 sing 134 n n CAS OAI G24 doub 135 n n OAR HAR G24 sing 136 n n # _atom_sites.entry_id 3NEX _atom_sites.fract_transf_matrix[1][1] 0.022852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1 1 GOL GOL . D 3 G24 A 1 126 1 G24 G24 . E 2 GOL B 1 1 1 GOL GOL . F 3 G24 B 1 126 1 G24 G24 . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 4 4 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 127 127 HOH HOH . G 4 HOH A 6 128 128 HOH HOH . G 4 HOH A 7 129 11 HOH HOH . G 4 HOH A 8 130 130 HOH HOH . G 4 HOH A 9 131 12 HOH HOH . G 4 HOH A 10 132 132 HOH HOH . G 4 HOH A 11 133 133 HOH HOH . G 4 HOH A 12 134 134 HOH HOH . G 4 HOH A 13 135 135 HOH HOH . G 4 HOH A 14 136 136 HOH HOH . G 4 HOH A 15 137 14 HOH HOH . G 4 HOH A 16 138 138 HOH HOH . G 4 HOH A 17 139 15 HOH HOH . G 4 HOH A 18 140 17 HOH HOH . G 4 HOH A 19 141 18 HOH HOH . G 4 HOH A 20 142 21 HOH HOH . G 4 HOH A 21 143 24 HOH HOH . G 4 HOH A 22 144 26 HOH HOH . G 4 HOH A 23 145 145 HOH HOH . G 4 HOH A 24 146 30 HOH HOH . G 4 HOH A 25 147 147 HOH HOH . G 4 HOH A 26 148 148 HOH HOH . G 4 HOH A 27 149 31 HOH HOH . G 4 HOH A 28 150 150 HOH HOH . G 4 HOH A 29 151 34 HOH HOH . G 4 HOH A 30 152 152 HOH HOH . G 4 HOH A 31 153 36 HOH HOH . G 4 HOH A 32 154 37 HOH HOH . G 4 HOH A 33 155 155 HOH HOH . G 4 HOH A 34 156 38 HOH HOH . G 4 HOH A 35 157 39 HOH HOH . G 4 HOH A 36 158 44 HOH HOH . G 4 HOH A 37 159 45 HOH HOH . G 4 HOH A 38 160 46 HOH HOH . G 4 HOH A 39 161 48 HOH HOH . G 4 HOH A 40 162 49 HOH HOH . G 4 HOH A 41 163 54 HOH HOH . G 4 HOH A 42 164 164 HOH HOH . G 4 HOH A 43 165 165 HOH HOH . G 4 HOH A 44 166 55 HOH HOH . G 4 HOH A 45 167 167 HOH HOH . G 4 HOH A 46 168 168 HOH HOH . G 4 HOH A 47 169 169 HOH HOH . G 4 HOH A 48 170 170 HOH HOH . G 4 HOH A 49 171 171 HOH HOH . G 4 HOH A 50 172 172 HOH HOH . G 4 HOH A 51 173 173 HOH HOH . G 4 HOH A 52 174 56 HOH HOH . G 4 HOH A 53 175 175 HOH HOH . G 4 HOH A 54 176 58 HOH HOH . G 4 HOH A 55 177 59 HOH HOH . G 4 HOH A 56 178 60 HOH HOH . G 4 HOH A 57 179 61 HOH HOH . G 4 HOH A 58 180 62 HOH HOH . G 4 HOH A 59 181 63 HOH HOH . G 4 HOH A 60 182 182 HOH HOH . G 4 HOH A 61 183 183 HOH HOH . G 4 HOH A 62 184 64 HOH HOH . G 4 HOH A 63 185 185 HOH HOH . G 4 HOH A 64 186 65 HOH HOH . G 4 HOH A 65 187 187 HOH HOH . G 4 HOH A 66 188 188 HOH HOH . G 4 HOH A 67 189 66 HOH HOH . G 4 HOH A 68 190 68 HOH HOH . G 4 HOH A 69 191 69 HOH HOH . G 4 HOH A 70 192 70 HOH HOH . G 4 HOH A 71 193 72 HOH HOH . G 4 HOH A 72 194 194 HOH HOH . G 4 HOH A 73 195 195 HOH HOH . G 4 HOH A 74 196 73 HOH HOH . G 4 HOH A 75 197 197 HOH HOH . G 4 HOH A 76 198 74 HOH HOH . G 4 HOH A 77 199 199 HOH HOH . G 4 HOH A 78 200 75 HOH HOH . G 4 HOH A 79 201 201 HOH HOH . G 4 HOH A 80 202 76 HOH HOH . G 4 HOH A 81 203 203 HOH HOH . G 4 HOH A 82 204 77 HOH HOH . G 4 HOH A 83 205 78 HOH HOH . G 4 HOH A 84 206 79 HOH HOH . G 4 HOH A 85 207 207 HOH HOH . G 4 HOH A 86 208 84 HOH HOH . G 4 HOH A 87 209 86 HOH HOH . G 4 HOH A 88 210 87 HOH HOH . G 4 HOH A 89 211 91 HOH HOH . G 4 HOH A 90 212 93 HOH HOH . G 4 HOH A 91 213 97 HOH HOH . G 4 HOH A 92 214 98 HOH HOH . G 4 HOH A 93 215 100 HOH HOH . G 4 HOH A 94 216 104 HOH HOH . G 4 HOH A 95 217 105 HOH HOH . G 4 HOH A 96 218 112 HOH HOH . G 4 HOH A 97 219 219 HOH HOH . G 4 HOH A 98 220 114 HOH HOH . G 4 HOH A 99 221 116 HOH HOH . G 4 HOH A 100 222 117 HOH HOH . G 4 HOH A 101 223 118 HOH HOH . G 4 HOH A 102 224 119 HOH HOH . G 4 HOH A 103 226 226 HOH HOH . G 4 HOH A 104 229 229 HOH HOH . H 4 HOH B 1 7 7 HOH HOH . H 4 HOH B 2 8 8 HOH HOH . H 4 HOH B 3 9 9 HOH HOH . H 4 HOH B 4 127 1 HOH HOH . H 4 HOH B 5 128 10 HOH HOH . H 4 HOH B 6 129 129 HOH HOH . H 4 HOH B 7 130 13 HOH HOH . H 4 HOH B 8 131 16 HOH HOH . H 4 HOH B 9 132 19 HOH HOH . H 4 HOH B 10 133 20 HOH HOH . H 4 HOH B 11 134 22 HOH HOH . H 4 HOH B 12 135 23 HOH HOH . H 4 HOH B 13 136 25 HOH HOH . H 4 HOH B 14 137 137 HOH HOH . H 4 HOH B 15 138 27 HOH HOH . H 4 HOH B 16 139 28 HOH HOH . H 4 HOH B 17 140 140 HOH HOH . H 4 HOH B 18 141 141 HOH HOH . H 4 HOH B 19 142 142 HOH HOH . H 4 HOH B 20 143 29 HOH HOH . H 4 HOH B 21 144 144 HOH HOH . H 4 HOH B 22 145 32 HOH HOH . H 4 HOH B 23 146 146 HOH HOH . H 4 HOH B 24 147 33 HOH HOH . H 4 HOH B 25 148 35 HOH HOH . H 4 HOH B 26 149 40 HOH HOH . H 4 HOH B 27 150 41 HOH HOH . H 4 HOH B 28 151 151 HOH HOH . H 4 HOH B 29 152 42 HOH HOH . H 4 HOH B 30 153 153 HOH HOH . H 4 HOH B 31 154 154 HOH HOH . H 4 HOH B 32 155 43 HOH HOH . H 4 HOH B 33 156 156 HOH HOH . H 4 HOH B 34 157 157 HOH HOH . H 4 HOH B 35 158 158 HOH HOH . H 4 HOH B 36 159 159 HOH HOH . H 4 HOH B 37 160 160 HOH HOH . H 4 HOH B 38 161 161 HOH HOH . H 4 HOH B 39 162 162 HOH HOH . H 4 HOH B 40 163 163 HOH HOH . H 4 HOH B 41 164 47 HOH HOH . H 4 HOH B 42 165 50 HOH HOH . H 4 HOH B 43 166 166 HOH HOH . H 4 HOH B 44 167 51 HOH HOH . H 4 HOH B 45 168 52 HOH HOH . H 4 HOH B 46 169 53 HOH HOH . H 4 HOH B 47 170 57 HOH HOH . H 4 HOH B 48 171 67 HOH HOH . H 4 HOH B 49 172 71 HOH HOH . H 4 HOH B 50 173 80 HOH HOH . H 4 HOH B 51 174 174 HOH HOH . H 4 HOH B 52 175 81 HOH HOH . H 4 HOH B 53 176 176 HOH HOH . H 4 HOH B 54 177 177 HOH HOH . H 4 HOH B 55 178 178 HOH HOH . H 4 HOH B 56 179 179 HOH HOH . H 4 HOH B 57 180 180 HOH HOH . H 4 HOH B 58 181 181 HOH HOH . H 4 HOH B 59 182 82 HOH HOH . H 4 HOH B 60 183 83 HOH HOH . H 4 HOH B 61 184 184 HOH HOH . H 4 HOH B 62 185 85 HOH HOH . H 4 HOH B 63 186 186 HOH HOH . H 4 HOH B 64 187 88 HOH HOH . H 4 HOH B 65 188 89 HOH HOH . H 4 HOH B 66 189 189 HOH HOH . H 4 HOH B 67 190 190 HOH HOH . H 4 HOH B 68 191 191 HOH HOH . H 4 HOH B 69 192 192 HOH HOH . H 4 HOH B 70 193 193 HOH HOH . H 4 HOH B 71 194 90 HOH HOH . H 4 HOH B 72 195 92 HOH HOH . H 4 HOH B 73 196 196 HOH HOH . H 4 HOH B 74 197 94 HOH HOH . H 4 HOH B 75 198 198 HOH HOH . H 4 HOH B 76 199 95 HOH HOH . H 4 HOH B 77 200 96 HOH HOH . H 4 HOH B 78 201 99 HOH HOH . H 4 HOH B 79 202 202 HOH HOH . H 4 HOH B 80 203 101 HOH HOH . H 4 HOH B 81 204 204 HOH HOH . H 4 HOH B 82 205 205 HOH HOH . H 4 HOH B 83 206 206 HOH HOH . H 4 HOH B 84 207 102 HOH HOH . H 4 HOH B 85 208 208 HOH HOH . H 4 HOH B 86 209 209 HOH HOH . H 4 HOH B 87 210 103 HOH HOH . H 4 HOH B 88 211 106 HOH HOH . H 4 HOH B 89 212 107 HOH HOH . H 4 HOH B 90 213 109 HOH HOH . H 4 HOH B 91 214 110 HOH HOH . H 4 HOH B 92 215 111 HOH HOH . H 4 HOH B 93 216 113 HOH HOH . H 4 HOH B 94 217 115 HOH HOH . H 4 HOH B 95 218 120 HOH HOH . H 4 HOH B 96 219 121 HOH HOH . H 4 HOH B 97 220 122 HOH HOH . H 4 HOH B 98 221 123 HOH HOH . H 4 HOH B 99 222 124 HOH HOH . H 4 HOH B 100 223 125 HOH HOH . H 4 HOH B 101 224 224 HOH HOH . H 4 HOH B 102 225 126 HOH HOH . H 4 HOH B 103 227 227 HOH HOH . H 4 HOH B 104 228 228 HOH HOH . H 4 HOH B 105 230 230 HOH HOH . H 4 HOH B 106 231 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF G24 . . . D 3 0.012 0.071 10.967 0.5 19.02 ? CAF G24 126 A 1 HETATM 2 C CAB G24 . . . D 3 0.72 0.911 11.801 0.5 17.81 ? CAB G24 126 A 1 HETATM 3 C CAC G24 . . . D 3 0.949 2.234 11.442 0.5 18.68 ? CAC G24 126 A 1 HETATM 4 C CAD G24 . . . D 3 0.45 2.764 10.267 0.5 19.09 ? CAD G24 126 A 1 HETATM 5 C CAH G24 . . . D 3 -0.274 1.928 9.43 0.5 18.95 ? CAH G24 126 A 1 HETATM 6 C CAG G24 . . . D 3 -0.491 0.596 9.783 0.5 18.87 ? CAG G24 126 A 1 HETATM 7 C CAQ G24 . . . D 3 -1.286 -0.319 8.845 0.5 18.45 ? CAQ G24 126 A 1 HETATM 8 C CAP G24 . . . D 3 -0.413 -0.643 7.634 0.5 18.5 ? CAP G24 126 A 1 HETATM 9 C CAO G24 . . . D 3 -0.671 0.023 6.459 0.5 18.51 ? CAO G24 126 A 1 HETATM 10 C CBA G24 . . . D 3 0.628 -1.557 7.683 0.5 18.34 ? CBA G24 126 A 1 HETATM 11 O OBC G24 . . . D 3 0.838 -2.182 8.866 0.5 16.96 ? OBC G24 126 A 1 HETATM 12 C CAZ G24 . . . D 3 1.403 -1.8 6.543 0.5 18.89 ? CAZ G24 126 A 1 HETATM 13 C CAY G24 . . . D 3 1.117 -1.124 5.345 0.5 19.09 ? CAY G24 126 A 1 HETATM 14 C CAN G24 . . . D 3 0.072 -0.197 5.325 0.5 19.13 ? CAN G24 126 A 1 HETATM 15 C CAM G24 . . . D 3 -0.369 0.627 4.126 0.5 19.59 ? CAM G24 126 A 1 HETATM 16 C CAL G24 . . . D 3 -0.013 0.093 2.733 0.5 20 ? CAL G24 126 A 1 HETATM 17 C CAX G24 . . . D 3 -0.784 -0.853 2.064 0.5 20.78 ? CAX G24 126 A 1 HETATM 18 C CBB G24 . . . D 3 -2.023 -1.449 2.731 0.5 21.07 ? CBB G24 126 A 1 HETATM 19 C CAW G24 . . . D 3 -0.441 -1.292 0.789 0.5 21.22 ? CAW G24 126 A 1 HETATM 20 C CAK G24 . . . D 3 1.089 0.61 2.063 0.5 21 ? CAK G24 126 A 1 HETATM 21 C CAE G24 . . . D 3 1.951 1.662 2.753 0.5 20.86 ? CAE G24 126 A 1 HETATM 22 C CAJ G24 . . . D 3 1.447 0.19 0.787 0.5 20.79 ? CAJ G24 126 A 1 HETATM 23 C CAV G24 . . . D 3 0.678 -0.771 0.147 0.5 20.92 ? CAV G24 126 A 1 HETATM 24 O OAU G24 . . . D 3 1.031 -1.201 -1.101 0.5 22.35 ? OAU G24 126 A 1 HETATM 25 C CAT G24 . . . D 3 0.085 -2.174 -1.62 0.5 22.31 ? CAT G24 126 A 1 HETATM 26 C CAS G24 . . . D 3 -1.279 -1.607 -2.059 0.5 22.82 ? CAS G24 126 A 1 HETATM 27 O OAR G24 . . . D 3 -1.358 -0.401 -2.386 0.5 24.54 ? OAR G24 126 A 1 HETATM 28 O OAI G24 . . . D 3 -2.269 -2.371 -2.033 0.5 24.62 ? OAI G24 126 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #