data_3NF3
#
_model_server_result.job_id            FAYym6cHp-hwAg2lPPhPVg 
_model_server_result.datetime_utc      '2024-10-19 21:46:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nf3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3NF3 
#
_exptl.entry_id    3NF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NF3 
_cell.length_a            56.1 
_cell.length_b            189.6 
_cell.length_c            41.51 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PHE 3 C PHE 3 1_555 B N AIB 4 C AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 sing 
covale ? covale2 B C AIB 4 C AIB 4 1_555 B N ALA 5 C ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 sing 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NF3 
_atom_sites.fract_transf_matrix[1][1]    0.017825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024091 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 600 ZN ZN . 
D 4 NI A 1 502 700 NI NI . 
E 5 HOH A 1 601 428 HOH HOH . 
E 5 HOH A 2 602 429 HOH HOH . 
E 5 HOH A 3 603 430 HOH HOH . 
E 5 HOH A 4 604 431 HOH HOH . 
E 5 HOH A 5 605 432 HOH HOH . 
E 5 HOH A 6 606 433 HOH HOH . 
E 5 HOH A 7 607 434 HOH HOH . 
E 5 HOH A 8 608 435 HOH HOH . 
E 5 HOH A 9 609 436 HOH HOH . 
E 5 HOH A 10 610 437 HOH HOH . 
E 5 HOH A 11 611 438 HOH HOH . 
E 5 HOH A 12 612 439 HOH HOH . 
E 5 HOH A 13 613 440 HOH HOH . 
E 5 HOH A 14 614 441 HOH HOH . 
E 5 HOH A 15 615 442 HOH HOH . 
E 5 HOH A 16 616 443 HOH HOH . 
E 5 HOH A 17 617 444 HOH HOH . 
E 5 HOH A 18 618 445 HOH HOH . 
E 5 HOH A 19 619 446 HOH HOH . 
E 5 HOH A 20 620 447 HOH HOH . 
E 5 HOH A 21 621 448 HOH HOH . 
E 5 HOH A 22 622 449 HOH HOH . 
E 5 HOH A 23 623 450 HOH HOH . 
E 5 HOH A 24 624 451 HOH HOH . 
E 5 HOH A 25 625 452 HOH HOH . 
E 5 HOH A 26 626 453 HOH HOH . 
E 5 HOH A 27 627 454 HOH HOH . 
E 5 HOH A 28 628 455 HOH HOH . 
E 5 HOH A 29 629 456 HOH HOH . 
E 5 HOH A 30 630 457 HOH HOH . 
E 5 HOH A 31 631 458 HOH HOH . 
E 5 HOH A 32 632 459 HOH HOH . 
E 5 HOH A 33 633 460 HOH HOH . 
E 5 HOH A 34 634 461 HOH HOH . 
E 5 HOH A 35 635 462 HOH HOH . 
E 5 HOH A 36 636 463 HOH HOH . 
E 5 HOH A 37 637 464 HOH HOH . 
E 5 HOH A 38 638 465 HOH HOH . 
E 5 HOH A 39 639 466 HOH HOH . 
E 5 HOH A 40 640 467 HOH HOH . 
E 5 HOH A 41 641 468 HOH HOH . 
E 5 HOH A 42 642 469 HOH HOH . 
E 5 HOH A 43 643 470 HOH HOH . 
E 5 HOH A 44 644 471 HOH HOH . 
E 5 HOH A 45 645 472 HOH HOH . 
E 5 HOH A 46 646 473 HOH HOH . 
E 5 HOH A 47 647 474 HOH HOH . 
E 5 HOH A 48 648 475 HOH HOH . 
E 5 HOH A 49 649 476 HOH HOH . 
E 5 HOH A 50 650 477 HOH HOH . 
E 5 HOH A 51 651 478 HOH HOH . 
E 5 HOH A 52 652 479 HOH HOH . 
E 5 HOH A 53 653 480 HOH HOH . 
E 5 HOH A 54 654 481 HOH HOH . 
E 5 HOH A 55 655 482 HOH HOH . 
E 5 HOH A 56 656 483 HOH HOH . 
E 5 HOH A 57 657 484 HOH HOH . 
E 5 HOH A 58 658 485 HOH HOH . 
E 5 HOH A 59 659 486 HOH HOH . 
E 5 HOH A 60 660 487 HOH HOH . 
E 5 HOH A 61 661 488 HOH HOH . 
E 5 HOH A 62 662 489 HOH HOH . 
E 5 HOH A 63 663 490 HOH HOH . 
E 5 HOH A 64 664 491 HOH HOH . 
E 5 HOH A 65 665 492 HOH HOH . 
E 5 HOH A 66 666 493 HOH HOH . 
E 5 HOH A 67 667 494 HOH HOH . 
E 5 HOH A 68 668 495 HOH HOH . 
E 5 HOH A 69 669 496 HOH HOH . 
E 5 HOH A 70 670 497 HOH HOH . 
E 5 HOH A 71 671 498 HOH HOH . 
E 5 HOH A 72 672 499 HOH HOH . 
E 5 HOH A 73 673 500 HOH HOH . 
E 5 HOH A 74 674 501 HOH HOH . 
E 5 HOH A 75 675 502 HOH HOH . 
E 5 HOH A 76 676 503 HOH HOH . 
E 5 HOH A 77 677 504 HOH HOH . 
E 5 HOH A 78 678 505 HOH HOH . 
E 5 HOH A 79 679 506 HOH HOH . 
E 5 HOH A 80 680 507 HOH HOH . 
E 5 HOH A 81 681 508 HOH HOH . 
E 5 HOH A 82 682 509 HOH HOH . 
E 5 HOH A 83 683 510 HOH HOH . 
E 5 HOH A 84 684 511 HOH HOH . 
F 5 HOH C 1 101 64 HOH HOH . 
F 5 HOH C 2 102 507 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               8.681 
_atom_site.Cartn_y               52.502 
_atom_site.Cartn_z               10.851 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.88 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#