data_3NF4 # _model_server_result.job_id ZQbmbTRZKX8L2M3mRs7xEw _model_server_result.datetime_utc '2024-10-25 20:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":384}' # _entry.id 3NF4 # _exptl.entry_id 3NF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NF4 _cell.length_a 95.65 _cell.length_b 99.23 _cell.length_c 171.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_665 -x+1,-y+3/2,z -1 0 0 0 -1 0 0 0 1 95.65 148.845 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLU 128 B GLU 124 1_555 D NA NA . B NA 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc2 B OE2 GLU 128 B GLU 124 1_555 D NA NA . B NA 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3NF4 _atom_sites.fract_transf_matrix[1][1] 0.010455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 384 384 FAD FAD . D 3 NA B 1 384 1 NA NA . E 4 HOH A 1 385 1 HOH HOH . E 4 HOH A 2 386 2 HOH HOH . E 4 HOH A 3 387 3 HOH HOH . E 4 HOH A 4 388 4 HOH HOH . E 4 HOH A 5 389 5 HOH HOH . E 4 HOH A 6 390 6 HOH HOH . E 4 HOH A 7 391 10 HOH HOH . E 4 HOH A 8 392 11 HOH HOH . E 4 HOH A 9 393 15 HOH HOH . E 4 HOH A 10 394 23 HOH HOH . E 4 HOH A 11 395 25 HOH HOH . E 4 HOH A 12 396 28 HOH HOH . E 4 HOH A 13 397 29 HOH HOH . E 4 HOH A 14 398 35 HOH HOH . E 4 HOH A 15 399 37 HOH HOH . E 4 HOH A 16 400 40 HOH HOH . E 4 HOH A 17 401 43 HOH HOH . E 4 HOH A 18 402 46 HOH HOH . E 4 HOH A 19 403 47 HOH HOH . E 4 HOH A 20 404 48 HOH HOH . E 4 HOH A 21 405 49 HOH HOH . E 4 HOH A 22 406 51 HOH HOH . E 4 HOH A 23 407 52 HOH HOH . E 4 HOH A 24 408 53 HOH HOH . E 4 HOH A 25 409 54 HOH HOH . E 4 HOH A 26 410 55 HOH HOH . E 4 HOH A 27 411 56 HOH HOH . E 4 HOH A 28 412 57 HOH HOH . E 4 HOH A 29 413 58 HOH HOH . E 4 HOH A 30 414 59 HOH HOH . E 4 HOH A 31 415 60 HOH HOH . E 4 HOH A 32 416 61 HOH HOH . E 4 HOH A 33 417 63 HOH HOH . E 4 HOH A 34 418 64 HOH HOH . E 4 HOH A 35 419 65 HOH HOH . E 4 HOH A 36 420 67 HOH HOH . E 4 HOH A 37 421 68 HOH HOH . E 4 HOH A 38 422 69 HOH HOH . E 4 HOH A 39 423 77 HOH HOH . E 4 HOH A 40 424 78 HOH HOH . E 4 HOH A 41 425 79 HOH HOH . E 4 HOH A 42 426 80 HOH HOH . E 4 HOH A 43 427 81 HOH HOH . E 4 HOH A 44 428 82 HOH HOH . E 4 HOH A 45 429 113 HOH HOH . E 4 HOH A 46 430 114 HOH HOH . E 4 HOH A 47 431 115 HOH HOH . E 4 HOH A 48 432 116 HOH HOH . E 4 HOH A 49 433 117 HOH HOH . E 4 HOH A 50 434 118 HOH HOH . E 4 HOH A 51 435 119 HOH HOH . E 4 HOH A 52 436 120 HOH HOH . E 4 HOH A 53 437 121 HOH HOH . E 4 HOH A 54 438 122 HOH HOH . E 4 HOH A 55 439 123 HOH HOH . E 4 HOH A 56 440 124 HOH HOH . E 4 HOH A 57 441 125 HOH HOH . E 4 HOH A 58 442 126 HOH HOH . E 4 HOH A 59 443 127 HOH HOH . E 4 HOH A 60 444 128 HOH HOH . E 4 HOH A 61 445 129 HOH HOH . E 4 HOH A 62 446 130 HOH HOH . E 4 HOH A 63 447 131 HOH HOH . E 4 HOH A 64 448 132 HOH HOH . E 4 HOH A 65 449 133 HOH HOH . E 4 HOH A 66 450 134 HOH HOH . E 4 HOH A 67 451 135 HOH HOH . E 4 HOH A 68 452 136 HOH HOH . E 4 HOH A 69 453 137 HOH HOH . E 4 HOH A 70 454 138 HOH HOH . E 4 HOH A 71 455 139 HOH HOH . E 4 HOH A 72 456 141 HOH HOH . E 4 HOH A 73 457 157 HOH HOH . E 4 HOH A 74 458 164 HOH HOH . E 4 HOH A 75 459 167 HOH HOH . F 4 HOH B 1 385 7 HOH HOH . F 4 HOH B 2 386 8 HOH HOH . F 4 HOH B 3 387 9 HOH HOH . F 4 HOH B 4 388 12 HOH HOH . F 4 HOH B 5 389 13 HOH HOH . F 4 HOH B 6 390 14 HOH HOH . F 4 HOH B 7 391 16 HOH HOH . F 4 HOH B 8 392 17 HOH HOH . F 4 HOH B 9 393 18 HOH HOH . F 4 HOH B 10 394 19 HOH HOH . F 4 HOH B 11 395 20 HOH HOH . F 4 HOH B 12 396 21 HOH HOH . F 4 HOH B 13 397 22 HOH HOH . F 4 HOH B 14 398 24 HOH HOH . F 4 HOH B 15 399 26 HOH HOH . F 4 HOH B 16 400 27 HOH HOH . F 4 HOH B 17 401 30 HOH HOH . F 4 HOH B 18 402 31 HOH HOH . F 4 HOH B 19 403 32 HOH HOH . F 4 HOH B 20 404 33 HOH HOH . F 4 HOH B 21 405 34 HOH HOH . F 4 HOH B 22 406 36 HOH HOH . F 4 HOH B 23 407 38 HOH HOH . F 4 HOH B 24 408 39 HOH HOH . F 4 HOH B 25 409 41 HOH HOH . F 4 HOH B 26 410 42 HOH HOH . F 4 HOH B 27 411 44 HOH HOH . F 4 HOH B 28 412 45 HOH HOH . F 4 HOH B 29 413 50 HOH HOH . F 4 HOH B 30 414 62 HOH HOH . F 4 HOH B 31 415 66 HOH HOH . F 4 HOH B 32 416 70 HOH HOH . F 4 HOH B 33 417 71 HOH HOH . F 4 HOH B 34 418 72 HOH HOH . F 4 HOH B 35 419 73 HOH HOH . F 4 HOH B 36 420 74 HOH HOH . F 4 HOH B 37 421 75 HOH HOH . F 4 HOH B 38 422 76 HOH HOH . F 4 HOH B 39 423 83 HOH HOH . F 4 HOH B 40 424 84 HOH HOH . F 4 HOH B 41 425 85 HOH HOH . F 4 HOH B 42 426 86 HOH HOH . F 4 HOH B 43 427 87 HOH HOH . F 4 HOH B 44 428 88 HOH HOH . F 4 HOH B 45 429 89 HOH HOH . F 4 HOH B 46 430 90 HOH HOH . F 4 HOH B 47 431 91 HOH HOH . F 4 HOH B 48 432 92 HOH HOH . F 4 HOH B 49 433 93 HOH HOH . F 4 HOH B 50 434 94 HOH HOH . F 4 HOH B 51 435 95 HOH HOH . F 4 HOH B 52 436 96 HOH HOH . F 4 HOH B 53 437 97 HOH HOH . F 4 HOH B 54 438 98 HOH HOH . F 4 HOH B 55 439 99 HOH HOH . F 4 HOH B 56 440 100 HOH HOH . F 4 HOH B 57 441 101 HOH HOH . F 4 HOH B 58 442 102 HOH HOH . F 4 HOH B 59 443 103 HOH HOH . F 4 HOH B 60 444 104 HOH HOH . F 4 HOH B 61 445 105 HOH HOH . F 4 HOH B 62 446 106 HOH HOH . F 4 HOH B 63 447 107 HOH HOH . F 4 HOH B 64 448 108 HOH HOH . F 4 HOH B 65 449 109 HOH HOH . F 4 HOH B 66 450 110 HOH HOH . F 4 HOH B 67 451 111 HOH HOH . F 4 HOH B 68 452 112 HOH HOH . F 4 HOH B 69 453 140 HOH HOH . F 4 HOH B 70 454 142 HOH HOH . F 4 HOH B 71 455 143 HOH HOH . F 4 HOH B 72 456 144 HOH HOH . F 4 HOH B 73 457 145 HOH HOH . F 4 HOH B 74 458 146 HOH HOH . F 4 HOH B 75 459 147 HOH HOH . F 4 HOH B 76 460 148 HOH HOH . F 4 HOH B 77 461 149 HOH HOH . F 4 HOH B 78 462 150 HOH HOH . F 4 HOH B 79 463 151 HOH HOH . F 4 HOH B 80 464 152 HOH HOH . F 4 HOH B 81 465 153 HOH HOH . F 4 HOH B 82 466 154 HOH HOH . F 4 HOH B 83 467 155 HOH HOH . F 4 HOH B 84 468 156 HOH HOH . F 4 HOH B 85 469 158 HOH HOH . F 4 HOH B 86 470 159 HOH HOH . F 4 HOH B 87 471 160 HOH HOH . F 4 HOH B 88 472 161 HOH HOH . F 4 HOH B 89 473 162 HOH HOH . F 4 HOH B 90 474 163 HOH HOH . F 4 HOH B 91 475 165 HOH HOH . F 4 HOH B 92 476 166 HOH HOH . F 4 HOH B 93 477 168 HOH HOH . F 4 HOH B 94 478 169 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.923 _atom_site.Cartn_y 78.543 _atom_site.Cartn_z 54.452 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 384 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #