data_3NF6
#
_model_server_result.job_id            ASOpnlThg0nXF7jvnAu-uA 
_model_server_result.datetime_utc      '2024-11-22 21:10:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":215}' 
#
_entry.id    3NF6 
#
_exptl.entry_id    3NF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              311.289 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NF6 
_cell.length_a            71.488 
_cell.length_b            71.488 
_cell.length_c            66.819 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 Q N N 
? 6 R N N 
#
_chem_comp.formula           'C17 H13 N O5' 
_chem_comp.formula_weight    311.289 
_chem_comp.id                IMV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 IMV sing 189 n n 
C2 O3 IMV doub 190 n n 
C2 C4 IMV sing 191 n n 
C4 C5 IMV doub 192 n y 
C4 C23 IMV sing 193 n y 
C5 C6 IMV sing 194 n n 
C5 C17 IMV sing 195 n y 
C6 N7 IMV sing 196 n n 
N7 C8 IMV sing 197 n n 
N7 C16 IMV sing 198 n n 
C8 O9 IMV doub 199 n n 
C8 C10 IMV sing 200 n n 
C10 C11 IMV sing 201 n n 
C11 C12 IMV doub 202 n y 
C11 C16 IMV sing 203 n y 
C12 C13 IMV sing 204 n y 
C13 C14 IMV doub 205 n y 
C14 C15 IMV sing 206 n y 
C15 C16 IMV doub 207 n y 
C17 C18 IMV doub 208 n y 
C18 C19 IMV sing 209 n y 
C19 O20 IMV sing 210 n n 
C19 C23 IMV doub 211 n y 
O20 C21 IMV sing 212 n n 
C21 O22 IMV sing 213 n n 
O22 C23 IMV sing 214 n n 
C6 H6 IMV sing 215 n n 
C6 H6A IMV sing 216 n n 
C10 H10 IMV sing 217 n n 
C10 H10A IMV sing 218 n n 
C12 H12 IMV sing 219 n n 
C13 H13 IMV sing 220 n n 
C14 H14 IMV sing 221 n n 
C15 H15 IMV sing 222 n n 
C17 H17 IMV sing 223 n n 
C18 H18 IMV sing 224 n n 
C21 H21 IMV sing 225 n n 
C21 H21A IMV sing 226 n n 
O1 H1 IMV sing 227 n n 
#
_atom_sites.entry_id                     3NF6 
_atom_sites.fract_transf_matrix[1][1]    0.013988 
_atom_sites.fract_transf_matrix[1][2]    0.008076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2 2 SO4 SO4 . 
D 2 SO4 A 1 4 4 SO4 SO4 . 
E 3 EDO A 1 213 2 EDO EDO . 
F 4 CL A 1 1 1 CL CL . 
G 5 ACY A 1 214 1 ACY ACY . 
H 6 IMV A 1 215 210 IMV UNL . 
I 6 IMV A 1 230 230 IMV UNL . 
J 2 SO4 B 1 1 1 SO4 SO4 . 
K 2 SO4 B 1 3 3 SO4 SO4 . 
L 3 EDO B 1 213 1 EDO EDO . 
M 3 EDO B 1 214 3 EDO EDO . 
N 3 EDO B 1 4 4 EDO EDO . 
O 4 CL B 1 2 2 CL CL . 
P 5 ACY B 1 215 2 ACY ACY . 
Q 6 IMV B 1 216 211 IMV UNL . 
R 6 IMV B 1 231 231 IMV UNL . 
S 7 HOH A 1 3 3 HOH HOH . 
S 7 HOH A 2 7 7 HOH HOH . 
S 7 HOH A 3 8 8 HOH HOH . 
S 7 HOH A 4 9 9 HOH HOH . 
S 7 HOH A 5 12 12 HOH HOH . 
S 7 HOH A 6 13 13 HOH HOH . 
S 7 HOH A 7 16 16 HOH HOH . 
S 7 HOH A 8 19 19 HOH HOH . 
S 7 HOH A 9 20 20 HOH HOH . 
S 7 HOH A 10 22 22 HOH HOH . 
S 7 HOH A 11 24 24 HOH HOH . 
S 7 HOH A 12 27 27 HOH HOH . 
S 7 HOH A 13 216 1 HOH HOH . 
S 7 HOH A 14 217 4 HOH HOH . 
S 7 HOH A 15 218 30 HOH HOH . 
S 7 HOH A 16 219 31 HOH HOH . 
S 7 HOH A 17 220 32 HOH HOH . 
S 7 HOH A 18 221 33 HOH HOH . 
S 7 HOH A 19 222 34 HOH HOH . 
S 7 HOH A 20 223 37 HOH HOH . 
S 7 HOH A 21 224 38 HOH HOH . 
S 7 HOH A 22 225 39 HOH HOH . 
S 7 HOH A 23 226 44 HOH HOH . 
S 7 HOH A 24 227 51 HOH HOH . 
S 7 HOH A 25 228 54 HOH HOH . 
S 7 HOH A 26 229 55 HOH HOH . 
S 7 HOH A 27 231 56 HOH HOH . 
S 7 HOH A 28 232 57 HOH HOH . 
S 7 HOH A 29 233 59 HOH HOH . 
S 7 HOH A 30 234 62 HOH HOH . 
S 7 HOH A 31 235 63 HOH HOH . 
S 7 HOH A 32 236 64 HOH HOH . 
S 7 HOH A 33 237 65 HOH HOH . 
S 7 HOH A 34 238 66 HOH HOH . 
S 7 HOH A 35 239 67 HOH HOH . 
S 7 HOH A 36 240 71 HOH HOH . 
S 7 HOH A 37 241 72 HOH HOH . 
S 7 HOH A 38 242 74 HOH HOH . 
S 7 HOH A 39 243 75 HOH HOH . 
S 7 HOH A 40 244 76 HOH HOH . 
S 7 HOH A 41 245 77 HOH HOH . 
S 7 HOH A 42 246 81 HOH HOH . 
S 7 HOH A 43 247 84 HOH HOH . 
S 7 HOH A 44 248 85 HOH HOH . 
S 7 HOH A 45 249 86 HOH HOH . 
S 7 HOH A 46 250 88 HOH HOH . 
S 7 HOH A 47 251 89 HOH HOH . 
S 7 HOH A 48 252 90 HOH HOH . 
S 7 HOH A 49 253 96 HOH HOH . 
S 7 HOH A 50 254 99 HOH HOH . 
S 7 HOH A 51 255 100 HOH HOH . 
S 7 HOH A 52 256 101 HOH HOH . 
S 7 HOH A 53 257 105 HOH HOH . 
S 7 HOH A 54 258 110 HOH HOH . 
S 7 HOH A 55 259 112 HOH HOH . 
T 7 HOH B 1 5 5 HOH HOH . 
T 7 HOH B 2 6 6 HOH HOH . 
T 7 HOH B 3 10 10 HOH HOH . 
T 7 HOH B 4 11 11 HOH HOH . 
T 7 HOH B 5 14 14 HOH HOH . 
T 7 HOH B 6 15 15 HOH HOH . 
T 7 HOH B 7 17 17 HOH HOH . 
T 7 HOH B 8 18 18 HOH HOH . 
T 7 HOH B 9 21 21 HOH HOH . 
T 7 HOH B 10 23 23 HOH HOH . 
T 7 HOH B 11 25 25 HOH HOH . 
T 7 HOH B 12 26 26 HOH HOH . 
T 7 HOH B 13 28 28 HOH HOH . 
T 7 HOH B 14 29 29 HOH HOH . 
T 7 HOH B 15 217 2 HOH HOH . 
T 7 HOH B 16 218 35 HOH HOH . 
T 7 HOH B 17 219 36 HOH HOH . 
T 7 HOH B 18 220 40 HOH HOH . 
T 7 HOH B 19 221 41 HOH HOH . 
T 7 HOH B 20 222 42 HOH HOH . 
T 7 HOH B 21 223 43 HOH HOH . 
T 7 HOH B 22 224 45 HOH HOH . 
T 7 HOH B 23 225 46 HOH HOH . 
T 7 HOH B 24 226 47 HOH HOH . 
T 7 HOH B 25 227 48 HOH HOH . 
T 7 HOH B 26 228 49 HOH HOH . 
T 7 HOH B 27 229 50 HOH HOH . 
T 7 HOH B 28 230 52 HOH HOH . 
T 7 HOH B 29 232 53 HOH HOH . 
T 7 HOH B 30 233 58 HOH HOH . 
T 7 HOH B 31 234 60 HOH HOH . 
T 7 HOH B 32 235 61 HOH HOH . 
T 7 HOH B 33 236 68 HOH HOH . 
T 7 HOH B 34 237 69 HOH HOH . 
T 7 HOH B 35 238 70 HOH HOH . 
T 7 HOH B 36 239 73 HOH HOH . 
T 7 HOH B 37 240 78 HOH HOH . 
T 7 HOH B 38 241 79 HOH HOH . 
T 7 HOH B 39 242 80 HOH HOH . 
T 7 HOH B 40 243 82 HOH HOH . 
T 7 HOH B 41 244 83 HOH HOH . 
T 7 HOH B 42 245 87 HOH HOH . 
T 7 HOH B 43 246 91 HOH HOH . 
T 7 HOH B 44 247 92 HOH HOH . 
T 7 HOH B 45 248 93 HOH HOH . 
T 7 HOH B 46 249 94 HOH HOH . 
T 7 HOH B 47 250 95 HOH HOH . 
T 7 HOH B 48 251 97 HOH HOH . 
T 7 HOH B 49 252 98 HOH HOH . 
T 7 HOH B 50 253 102 HOH HOH . 
T 7 HOH B 51 254 103 HOH HOH . 
T 7 HOH B 52 255 104 HOH HOH . 
T 7 HOH B 53 256 106 HOH HOH . 
T 7 HOH B 54 257 107 HOH HOH . 
T 7 HOH B 55 258 108 HOH HOH . 
T 7 HOH B 56 259 109 HOH HOH . 
T 7 HOH B 57 260 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 IMV . . . H 6 13.117 -46.886 1.789 0.95 20.13 ? O1 IMV 215 A 1 
HETATM 2 C C2 IMV . . . H 6 13.752 -46.005 1.145 0.95 18.92 ? C2 IMV 215 A 1 
HETATM 3 O O3 IMV . . . H 6 14.823 -45.5 1.569 0.95 19.16 ? O3 IMV 215 A 1 
HETATM 4 C C4 IMV . . . H 6 13.198 -45.479 -0.163 0.95 18.31 ? C4 IMV 215 A 1 
HETATM 5 C C5 IMV . . . H 6 11.831 -45.303 -0.396 0.95 18.25 ? C5 IMV 215 A 1 
HETATM 6 C C6 IMV . . . H 6 10.813 -45.655 0.665 0.95 20.01 ? C6 IMV 215 A 1 
HETATM 7 N N7 IMV . . . H 6 9.445 -45.252 0.41 0.95 19.61 ? N7 IMV 215 A 1 
HETATM 8 C C8 IMV . . . H 6 8.49 -46.014 -0.242 0.95 20.82 ? C8 IMV 215 A 1 
HETATM 9 O O9 IMV . . . H 6 8.598 -47.139 -0.717 0.95 20.63 ? O9 IMV 215 A 1 
HETATM 10 C C10 IMV . . . H 6 7.239 -45.199 -0.339 0.95 21.27 ? C10 IMV 215 A 1 
HETATM 11 C C11 IMV . . . H 6 7.662 -43.917 0.32 0.95 20.98 ? C11 IMV 215 A 1 
HETATM 12 C C12 IMV . . . H 6 6.907 -42.786 0.51 0.95 18.48 ? C12 IMV 215 A 1 
HETATM 13 C C13 IMV . . . H 6 7.522 -41.714 1.147 0.95 19.48 ? C13 IMV 215 A 1 
HETATM 14 C C14 IMV . . . H 6 8.84 -41.798 1.575 0.95 19.66 ? C14 IMV 215 A 1 
HETATM 15 C C15 IMV . . . H 6 9.6 -42.939 1.375 0.95 18.49 ? C15 IMV 215 A 1 
HETATM 16 C C16 IMV . . . H 6 8.967 -43.984 0.739 0.95 17.69 ? C16 IMV 215 A 1 
HETATM 17 C C17 IMV . . . H 6 11.37 -44.801 -1.61 0.95 19.88 ? C17 IMV 215 A 1 
HETATM 18 C C18 IMV . . . H 6 12.263 -44.475 -2.615 0.95 20.01 ? C18 IMV 215 A 1 
HETATM 19 C C19 IMV . . . H 6 13.605 -44.664 -2.373 0.95 18.56 ? C19 IMV 215 A 1 
HETATM 20 O O20 IMV . . . H 6 14.62 -44.401 -3.258 0.95 18.08 ? O20 IMV 215 A 1 
HETATM 21 C C21 IMV . . . H 6 15.767 -44.607 -2.445 0.95 18.17 ? C21 IMV 215 A 1 
HETATM 22 O O22 IMV . . . H 6 15.451 -45.241 -1.192 0.95 21 ? O22 IMV 215 A 1 
HETATM 23 C C23 IMV . . . H 6 14.062 -45.148 -1.194 0.95 16.87 ? C23 IMV 215 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#