data_3NF6 # _model_server_result.job_id jvkLrPo7TFMHNG-kOPCI4g _model_server_result.datetime_utc '2024-11-22 21:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":216}' # _entry.id 3NF6 # _exptl.entry_id 3NF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.289 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NF6 _cell.length_a 71.488 _cell.length_b 71.488 _cell.length_c 66.819 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 Q N N ? 6 R N N # _chem_comp.formula 'C17 H13 N O5' _chem_comp.formula_weight 311.289 _chem_comp.id IMV _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 IMV sing 189 n n C2 O3 IMV doub 190 n n C2 C4 IMV sing 191 n n C4 C5 IMV doub 192 n y C4 C23 IMV sing 193 n y C5 C6 IMV sing 194 n n C5 C17 IMV sing 195 n y C6 N7 IMV sing 196 n n N7 C8 IMV sing 197 n n N7 C16 IMV sing 198 n n C8 O9 IMV doub 199 n n C8 C10 IMV sing 200 n n C10 C11 IMV sing 201 n n C11 C12 IMV doub 202 n y C11 C16 IMV sing 203 n y C12 C13 IMV sing 204 n y C13 C14 IMV doub 205 n y C14 C15 IMV sing 206 n y C15 C16 IMV doub 207 n y C17 C18 IMV doub 208 n y C18 C19 IMV sing 209 n y C19 O20 IMV sing 210 n n C19 C23 IMV doub 211 n y O20 C21 IMV sing 212 n n C21 O22 IMV sing 213 n n O22 C23 IMV sing 214 n n C6 H6 IMV sing 215 n n C6 H6A IMV sing 216 n n C10 H10 IMV sing 217 n n C10 H10A IMV sing 218 n n C12 H12 IMV sing 219 n n C13 H13 IMV sing 220 n n C14 H14 IMV sing 221 n n C15 H15 IMV sing 222 n n C17 H17 IMV sing 223 n n C18 H18 IMV sing 224 n n C21 H21 IMV sing 225 n n C21 H21A IMV sing 226 n n O1 H1 IMV sing 227 n n # _atom_sites.entry_id 3NF6 _atom_sites.fract_transf_matrix[1][1] 0.013988 _atom_sites.fract_transf_matrix[1][2] 0.008076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 3 EDO A 1 213 2 EDO EDO . F 4 CL A 1 1 1 CL CL . G 5 ACY A 1 214 1 ACY ACY . H 6 IMV A 1 215 210 IMV UNL . I 6 IMV A 1 230 230 IMV UNL . J 2 SO4 B 1 1 1 SO4 SO4 . K 2 SO4 B 1 3 3 SO4 SO4 . L 3 EDO B 1 213 1 EDO EDO . M 3 EDO B 1 214 3 EDO EDO . N 3 EDO B 1 4 4 EDO EDO . O 4 CL B 1 2 2 CL CL . P 5 ACY B 1 215 2 ACY ACY . Q 6 IMV B 1 216 211 IMV UNL . R 6 IMV B 1 231 231 IMV UNL . S 7 HOH A 1 3 3 HOH HOH . S 7 HOH A 2 7 7 HOH HOH . S 7 HOH A 3 8 8 HOH HOH . S 7 HOH A 4 9 9 HOH HOH . S 7 HOH A 5 12 12 HOH HOH . S 7 HOH A 6 13 13 HOH HOH . S 7 HOH A 7 16 16 HOH HOH . S 7 HOH A 8 19 19 HOH HOH . S 7 HOH A 9 20 20 HOH HOH . S 7 HOH A 10 22 22 HOH HOH . S 7 HOH A 11 24 24 HOH HOH . S 7 HOH A 12 27 27 HOH HOH . S 7 HOH A 13 216 1 HOH HOH . S 7 HOH A 14 217 4 HOH HOH . S 7 HOH A 15 218 30 HOH HOH . S 7 HOH A 16 219 31 HOH HOH . S 7 HOH A 17 220 32 HOH HOH . S 7 HOH A 18 221 33 HOH HOH . S 7 HOH A 19 222 34 HOH HOH . S 7 HOH A 20 223 37 HOH HOH . S 7 HOH A 21 224 38 HOH HOH . S 7 HOH A 22 225 39 HOH HOH . S 7 HOH A 23 226 44 HOH HOH . S 7 HOH A 24 227 51 HOH HOH . S 7 HOH A 25 228 54 HOH HOH . S 7 HOH A 26 229 55 HOH HOH . S 7 HOH A 27 231 56 HOH HOH . S 7 HOH A 28 232 57 HOH HOH . S 7 HOH A 29 233 59 HOH HOH . S 7 HOH A 30 234 62 HOH HOH . S 7 HOH A 31 235 63 HOH HOH . S 7 HOH A 32 236 64 HOH HOH . S 7 HOH A 33 237 65 HOH HOH . S 7 HOH A 34 238 66 HOH HOH . S 7 HOH A 35 239 67 HOH HOH . S 7 HOH A 36 240 71 HOH HOH . S 7 HOH A 37 241 72 HOH HOH . S 7 HOH A 38 242 74 HOH HOH . S 7 HOH A 39 243 75 HOH HOH . S 7 HOH A 40 244 76 HOH HOH . S 7 HOH A 41 245 77 HOH HOH . S 7 HOH A 42 246 81 HOH HOH . S 7 HOH A 43 247 84 HOH HOH . S 7 HOH A 44 248 85 HOH HOH . S 7 HOH A 45 249 86 HOH HOH . S 7 HOH A 46 250 88 HOH HOH . S 7 HOH A 47 251 89 HOH HOH . S 7 HOH A 48 252 90 HOH HOH . S 7 HOH A 49 253 96 HOH HOH . S 7 HOH A 50 254 99 HOH HOH . S 7 HOH A 51 255 100 HOH HOH . S 7 HOH A 52 256 101 HOH HOH . S 7 HOH A 53 257 105 HOH HOH . S 7 HOH A 54 258 110 HOH HOH . S 7 HOH A 55 259 112 HOH HOH . T 7 HOH B 1 5 5 HOH HOH . T 7 HOH B 2 6 6 HOH HOH . T 7 HOH B 3 10 10 HOH HOH . T 7 HOH B 4 11 11 HOH HOH . T 7 HOH B 5 14 14 HOH HOH . T 7 HOH B 6 15 15 HOH HOH . T 7 HOH B 7 17 17 HOH HOH . T 7 HOH B 8 18 18 HOH HOH . T 7 HOH B 9 21 21 HOH HOH . T 7 HOH B 10 23 23 HOH HOH . T 7 HOH B 11 25 25 HOH HOH . T 7 HOH B 12 26 26 HOH HOH . T 7 HOH B 13 28 28 HOH HOH . T 7 HOH B 14 29 29 HOH HOH . T 7 HOH B 15 217 2 HOH HOH . T 7 HOH B 16 218 35 HOH HOH . T 7 HOH B 17 219 36 HOH HOH . T 7 HOH B 18 220 40 HOH HOH . T 7 HOH B 19 221 41 HOH HOH . T 7 HOH B 20 222 42 HOH HOH . T 7 HOH B 21 223 43 HOH HOH . T 7 HOH B 22 224 45 HOH HOH . T 7 HOH B 23 225 46 HOH HOH . T 7 HOH B 24 226 47 HOH HOH . T 7 HOH B 25 227 48 HOH HOH . T 7 HOH B 26 228 49 HOH HOH . T 7 HOH B 27 229 50 HOH HOH . T 7 HOH B 28 230 52 HOH HOH . T 7 HOH B 29 232 53 HOH HOH . T 7 HOH B 30 233 58 HOH HOH . T 7 HOH B 31 234 60 HOH HOH . T 7 HOH B 32 235 61 HOH HOH . T 7 HOH B 33 236 68 HOH HOH . T 7 HOH B 34 237 69 HOH HOH . T 7 HOH B 35 238 70 HOH HOH . T 7 HOH B 36 239 73 HOH HOH . T 7 HOH B 37 240 78 HOH HOH . T 7 HOH B 38 241 79 HOH HOH . T 7 HOH B 39 242 80 HOH HOH . T 7 HOH B 40 243 82 HOH HOH . T 7 HOH B 41 244 83 HOH HOH . T 7 HOH B 42 245 87 HOH HOH . T 7 HOH B 43 246 91 HOH HOH . T 7 HOH B 44 247 92 HOH HOH . T 7 HOH B 45 248 93 HOH HOH . T 7 HOH B 46 249 94 HOH HOH . T 7 HOH B 47 250 95 HOH HOH . T 7 HOH B 48 251 97 HOH HOH . T 7 HOH B 49 252 98 HOH HOH . T 7 HOH B 50 253 102 HOH HOH . T 7 HOH B 51 254 103 HOH HOH . T 7 HOH B 52 255 104 HOH HOH . T 7 HOH B 53 256 106 HOH HOH . T 7 HOH B 54 257 107 HOH HOH . T 7 HOH B 55 258 108 HOH HOH . T 7 HOH B 56 259 109 HOH HOH . T 7 HOH B 57 260 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 IMV . . . Q 6 34.049 -34.827 -14.41 0.95 19.47 ? O1 IMV 216 B 1 HETATM 2 C C2 IMV . . . Q 6 32.963 -34.924 -13.76 0.95 19.57 ? C2 IMV 216 B 1 HETATM 3 O O3 IMV . . . Q 6 31.956 -35.586 -14.177 0.95 18.76 ? O3 IMV 216 B 1 HETATM 4 C C4 IMV . . . Q 6 32.781 -34.186 -12.442 0.95 19.88 ? C4 IMV 216 B 1 HETATM 5 C C5 IMV . . . Q 6 33.308 -32.913 -12.207 0.95 19.96 ? C5 IMV 216 B 1 HETATM 6 C C6 IMV . . . Q 6 34.121 -32.234 -13.296 0.95 20.27 ? C6 IMV 216 B 1 HETATM 7 N N7 IMV . . . Q 6 34.434 -30.849 -13.025 0.95 19.19 ? N7 IMV 216 B 1 HETATM 8 C C8 IMV . . . Q 6 35.592 -30.418 -12.434 0.95 21.39 ? C8 IMV 216 B 1 HETATM 9 O O9 IMV . . . Q 6 36.531 -31.087 -12.024 0.95 21.53 ? O9 IMV 216 B 1 HETATM 10 C C10 IMV . . . Q 6 35.488 -28.938 -12.276 0.95 20.01 ? C10 IMV 216 B 1 HETATM 11 C C11 IMV . . . Q 6 34.18 -28.641 -12.925 0.95 19.91 ? C11 IMV 216 B 1 HETATM 12 C C12 IMV . . . Q 6 33.587 -27.42 -13.117 0.95 18.24 ? C12 IMV 216 B 1 HETATM 13 C C13 IMV . . . Q 6 32.352 -27.407 -13.752 0.95 19.68 ? C13 IMV 216 B 1 HETATM 14 C C14 IMV . . . Q 6 31.754 -28.591 -14.182 0.95 18.52 ? C14 IMV 216 B 1 HETATM 15 C C15 IMV . . . Q 6 32.361 -29.817 -13.977 0.95 16.69 ? C15 IMV 216 B 1 HETATM 16 C C16 IMV . . . Q 6 33.582 -29.796 -13.348 0.95 18.16 ? C16 IMV 216 B 1 HETATM 17 C C17 IMV . . . Q 6 33.1 -32.258 -10.995 0.95 19.01 ? C17 IMV 216 B 1 HETATM 18 C C18 IMV . . . Q 6 32.373 -32.844 -9.97 0.95 19.69 ? C18 IMV 216 B 1 HETATM 19 C C19 IMV . . . Q 6 31.867 -34.101 -10.219 0.95 16.93 ? C19 IMV 216 B 1 HETATM 20 O O20 IMV . . . Q 6 31.13 -34.849 -9.342 0.95 19.37 ? O20 IMV 216 B 1 HETATM 21 C C21 IMV . . . Q 6 30.711 -35.909 -10.191 0.95 17.74 ? C21 IMV 216 B 1 HETATM 22 O O22 IMV . . . Q 6 31.458 -35.98 -11.4 0.95 20.5 ? O22 IMV 216 B 1 HETATM 23 C C23 IMV . . . Q 6 32.057 -34.741 -11.4 0.95 16.59 ? C23 IMV 216 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #